Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0002155

Physical Location & Seq

Genomic Coordinates Forward (+)

32549394 .. 32550104

Gene Structure 711 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024155

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGCTACTGTGGGTTTCTTCTTCTTATCGCATTCCTCCTCGTCCGTACGAATTCAAAGACAACAAACACCGTGAGAAGTGCATATTTCTCACTATATTCCTTGTGGGTATACCCTTCGTCCTGATTATATGCTACCTCGTGTACTTTAACTTCTTGGACTACAAGATGAATCCTCAAAGACCCCAGTTTCAGATCGACTCCGCATCGGTCTCCGGAGTGAGCGTCACCGGCTGCCAGTTAACTACCACGTGGAACATCACCCTCCTCGCCGCAAACCCTAACCTGCACCTCGGCGTTGACTATCTGACCATCGACTCGTCCCTCTATTATGGAGACAAGAAAGACGTGCTCTACTGGGACGGGAGTACTAAGACGACACGCATTATCTCAATCGCAACCACGACGTTGTGTCAGCCATTCTTCCTGGACAAAGGAGGGAACCAGACCACCCCTGTCAATTTCAAACTCGCAGTAGTGAGTAAGGACGTCGACTGTGTCTTGGCGAAGGAGATCTCAGAGGGAGTGGCTCGTGGTGGCAAAGTCAAATTTGGGCTGGGCATCAGTCTTTTGTTTGATTATAGAACCAAGTTTTCGATGCTGCGAGGTCCCGGTGAAGTTAGCGTCTTCTGTAATCGGGTCAAATTTGTGTTCTCCCCGAGTAATAATCATGGCACTGGAATTTTCAAAGGTCAGTCAAGGGAATGCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

237

Amino Acids

26.5

Weight (kDa)

9.12

Isoelectric Point (pI)

21.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002155)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g17371
rosa_chinensis	RchiOBHm_Chr3g0471371 RchiOBHm_Chr3g0471581
rosa_laevigata	RLG00000010740 RLG00000015053 RLG00000024155 RLG00000024164 RLG00000024165 RLG00000024167 RLG00000024171 RLG00000024183
rosa_multiflora	Rmu_sc0005634.1_g000007 Rmu_sc0006582.1_g000002 Rmu_sc0006582.1_g000017 Rmu_sc0010513.1_g000002
rosa_roxburghii	Rroxscaffold_6G00409790 Rroxscaffold_6G00409870 Rroxscaffold_6G00410010 Rroxscaffold_7G00161210
rosa_rugosa	Rorug03G0118400
rosa_samantha	Rh3AG168200 Rh3AG168600 Rh3AG168800 Rh3BG192600 Rh3BG193800 Rh3BG194100 Rh3BG194400 Rh3BG194600 Rh3CG182900 Rh3CG184700 Rh3CG184800 Rh3CG185000 Rh3CG185200 Rh3CG185300 Rh3DG180200 Rh3DG180400 Rh3DG180800 Rh3DG181000 Rh3DG181700 Rh3DG183000 Rh6AG466900 Rh6DG468700
rosa_wichuraiana	Rw3G015740 Rw6G040700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	489
Acc36I	ACCTGC	1 cut(s)	291
AccI	GTMKAC	2 cut(s)	109, 489
AccIII	TCCGGA	1 cut(s)	212
AciI	CCGC	2 cut(s)	201, 270
AcsI	RAATTY	4 cut(s)	50, 545, 641, 678
AcvI	CACGTG	1 cut(s)	249
AcyI	GRCGYC	1 cut(s)	486
AfaI	GTAC	3 cut(s)	47, 143, 367
AgsI	TTSAA	3 cut(s)	55, 463, 685
AhdI	GACNNNNNGTC	1 cut(s)	408
AjiI	CACGTC	1 cut(s)	346
AjnI	CCWGG	1 cut(s)	423
Alw21I	GWGCWC	1 cut(s)	351
Alw26I	GTCTC	2 cut(s)	214, 327
Ama87I	CYCGRG	1 cut(s)	655
Aor13HI	TCCGGA	1 cut(s)	212
ApeKI	GCWGC	2 cut(s)	231, 598
ApoI	RAATTY	4 cut(s)	50, 545, 641, 678
AspS9I	GGNCC	1 cut(s)	605
AsuC2I	CCSGG	1 cut(s)	609
AsuHPI	GGTGA	3 cut(s)	217, 250, 623
AvaI	CYCGRG	1 cut(s)	655
AvaII	GGWCC	1 cut(s)	605
BarI	GAAGNNNNNNTAC	2 cut(s)	134, 166
BauI	CACGAG	2 cut(s)	137, 528
BbrPI	CACGTG	1 cut(s)	249
BbsI	GAAGAC	1 cut(s)	616
Bbv12I	GWGCWC	1 cut(s)	351
BbvI	GCAGC	2 cut(s)	218, 585
BccI	CCATC	1 cut(s)	317
BciT130I	CCWGG	1 cut(s)	425
BcnI	CCSGG	1 cut(s)	609
BcoDI	GTCTC	2 cut(s)	214, 327
BfuAI	ACCTGC	1 cut(s)	291
BglII	AGATCT	1 cut(s)	510
BisI	GCNGC	3 cut(s)	232, 270, 599
BlsI	GCNGC	3 cut(s)	233, 271, 600
BmcAI	AGTACT	1 cut(s)	367
Bme1390I	CCNGG	2 cut(s)	425, 609
Bme18I	GGWCC	1 cut(s)	605
BmeRI	GACNNNNNGTC	1 cut(s)	408
BmeT110I	CYCGRG	1 cut(s)	655
BmgBI	CACGTC	1 cut(s)	346
BmgT120I	GGNCC	1 cut(s)	605
BmiI	GGNNCC	2 cut(s)	440, 607
BmrFI	CCNGG	2 cut(s)	425, 609
BmrI	ACTGGG	2 cut(s)	178, 364
BmsI	GCATC	3 cut(s)	212, 567, 585
BmuI	ACTGGG	2 cut(s)	178, 364
BpiI	GAAGAC	1 cut(s)	616
BpuMI	CCSGG	1 cut(s)	609
BsaAI	YACGTR	1 cut(s)	249
BsaHI	GRCGYC	1 cut(s)	486
BsaI	GGTCTC	1 cut(s)	214
BsaJI	CCNNGG	1 cut(s)	289
BsaWI	WCCGGW	1 cut(s)	212
BsaXI	ACNNNNNCTCC	2 cut(s)	207, 237
Bse118I	RCCGGY	1 cut(s)	227
Bse1I	ACTGG	4 cut(s)	184, 235, 359, 679
BseAI	TCCGGA	1 cut(s)	212
BseBI	CCWGG	1 cut(s)	425
BseDI	CCNNGG	1 cut(s)	289
BseMII	CTCAG	1 cut(s)	528
BseNI	ACTGG	4 cut(s)	184, 235, 359, 679
BseRI	GAGGAG	2 cut(s)	27, 254
BseXI	GCAGC	2 cut(s)	218, 585
BseYI	CCCAGC	1 cut(s)	553
BsgI	GTGCAG	1 cut(s)	269
BsiHKAI	GWGCWC	1 cut(s)	351
BsiHKCI	CYCGRG	1 cut(s)	655
BsiSI	CCGG	3 cut(s)	213, 228, 609
BsiWI	CGTACG	1 cut(s)	45
BslFI	GGGAC	3 cut(s)	304, 371, 591
BsmAI	GTCTC	2 cut(s)	214, 327
BsmFI	GGGAC	3 cut(s)	304, 371, 591
BsmI	GAATGC	2 cut(s)	30, 707
Bso31I	GGTCTC	1 cut(s)	214
BsoBI	CYCGRG	1 cut(s)	655
Bsp1286I	GDGCHC	1 cut(s)	351
Bsp13I	TCCGGA	1 cut(s)	212
Bsp143I	GATC	2 cut(s)	192, 510
BspACI	CCGC	2 cut(s)	201, 270
BspCNI	CTCAG	1 cut(s)	527
BspEI	TCCGGA	1 cut(s)	212
BspLI	GGNNCC	2 cut(s)	440, 607
BspMI	ACCTGC	1 cut(s)	291
BspTNI	GGTCTC	1 cut(s)	214
BsrFI	RCCGGY	1 cut(s)	227
BsrI	ACTGG	4 cut(s)	184, 235, 359, 679
BssAI	RCCGGY	1 cut(s)	227
BssECI	CCNNGG	1 cut(s)	289
BssMI	GATC	2 cut(s)	192, 510
BssNAI	GTATAC	1 cut(s)	110
BssNI	GRCGYC	1 cut(s)	486
BssSI	CACGAG	2 cut(s)	137, 528
Bst1107I	GTATAC	1 cut(s)	110
Bst2BI	CACGAG	2 cut(s)	137, 528
Bst2UI	CCWGG	1 cut(s)	425
Bst4CI	ACNGT	3 cut(s)	9, 71, 494
BstACI	GRCGYC	1 cut(s)	486
BstBAI	YACGTR	1 cut(s)	249
BstDEI	CTNAG	2 cut(s)	369, 514
BstKTI	GATC	2 cut(s)	195, 513
BstMAI	GTCTC	2 cut(s)	214, 327
BstMBI	GATC	2 cut(s)	192, 510
BstMWI	GCNNNNNNNGC	1 cut(s)	228
BstNI	CCWGG	1 cut(s)	425
BstSCI	CCNGG	2 cut(s)	423, 607
BstV1I	GCAGC	2 cut(s)	218, 585
BstV2I	GAAGAC	1 cut(s)	616
BstX2I	RGATCY	1 cut(s)	510
BstYI	RGATCY	1 cut(s)	510
BstZ17I	GTATAC	1 cut(s)	110
BtrI	CACGTC	1 cut(s)	346
BtsIMutI	CAGTG	1 cut(s)	672
BveI	ACCTGC	1 cut(s)	291
Cfr10I	RCCGGY	1 cut(s)	227
Cfr13I	GGNCC	1 cut(s)	605
CseI	GACGC	2 cut(s)	211, 610
Csp6I	GTAC	3 cut(s)	46, 142, 366
CviAII	CATG	2 cut(s)	668, 708
CviJI	RGCY	4 cut(s)	231, 415, 527, 553
CviKI_1	RGCY	4 cut(s)	231, 415, 527, 553
CviQI	GTAC	3 cut(s)	46, 142, 366
DdeI	CTNAG	2 cut(s)	369, 514
DpnI	GATC	2 cut(s)	194, 512
DpnII	GATC	2 cut(s)	192, 510
DriI	GACNNNNNGTC	1 cut(s)	408
Eam1105I	GACNNNNNGTC	1 cut(s)	408
Eco31I	GGTCTC	1 cut(s)	214
Eco47I	GGWCC	1 cut(s)	605
Eco72I	CACGTG	1 cut(s)	249
Eco88I	CYCGRG	1 cut(s)	655
EcoO109I	RGGNCCY	1 cut(s)	605
EcoRI	GAATTC	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	423
FaeI	CATG	2 cut(s)	671, 711
FaiI	YATR	9 cut(s)	83, 95, 110, 128, 130, 330, 579, 669, 709
FaqI	GGGAC	3 cut(s)	304, 371, 591
FatI	CATG	2 cut(s)	667, 707
FblI	GTMKAC	2 cut(s)	109, 489
Fnu4HI	GCNGC	3 cut(s)	232, 270, 599
Fsp4HI	GCNGC	3 cut(s)	232, 270, 599
GluI	GCNGC	3 cut(s)	232, 270, 599
GsaI	CCCAGC	1 cut(s)	557
HapII	CCGG	3 cut(s)	213, 228, 609
HgaI	GACGC	2 cut(s)	211, 610
Hin1I	GRCGYC	1 cut(s)	486
Hin1II	CATG	2 cut(s)	671, 711
HincII	GTYRAC	3 cut(s)	240, 298, 490
HindII	GTYRAC	3 cut(s)	240, 298, 490
HinfI	GANTC	3 cut(s)	169, 197, 314
HpaI	GTTAAC	1 cut(s)	240
HpaII	CCGG	3 cut(s)	213, 228, 609
HphI	GGTGA	3 cut(s)	217, 250, 623
Hpy166II	GTNNAC	5 cut(s)	110, 142, 240, 298, 490
Hpy188I	TCNGA	3 cut(s)	192, 306, 517
Hpy188III	TCNNGA	2 cut(s)	121, 213
Hpy8I	GTNNAC	5 cut(s)	110, 142, 240, 298, 490
Hpy99I	CGWCG	2 cut(s)	406, 491
HpyAV	CCTTC	2 cut(s)	124, 499
HpyCH4III	ACNGT	3 cut(s)	9, 71, 494
HpyCH4IV	ACGT	4 cut(s)	248, 345, 404, 486
HpyCH4V	TGCA	2 cut(s)	81, 286
HpyF10VI	GCNNNNNNNGC	1 cut(s)	228
HpyF3I	CTNAG	2 cut(s)	369, 514
HpySE526I	ACGT	4 cut(s)	248, 345, 404, 486
Hsp92I	GRCGYC	1 cut(s)	486
Hsp92II	CATG	2 cut(s)	671, 711
Kpn2I	TCCGGA	1 cut(s)	212
KspAI	GTTAAC	1 cut(s)	240
Kzo9I	GATC	2 cut(s)	192, 510
Lsp1109I	GCAGC	2 cut(s)	218, 585
LweI	GCATC	3 cut(s)	212, 567, 585
MaeII	ACGT	4 cut(s)	248, 345, 404, 486
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	2 cut(s)	194, 512
MboI	GATC	2 cut(s)	192, 510
MboII	GAAGA	4 cut(s)	9, 12, 412, 616
MflI	RGATCY	1 cut(s)	510
MhlI	GDGCHC	1 cut(s)	351
MluCI	AATT	5 cut(s)	50, 457, 545, 641, 678
MlyI	GAGTC	2 cut(s)	191, 308
MroI	TCCGGA	1 cut(s)	212
MseI	TTAA	2 cut(s)	147, 239
MspI	CCGG	3 cut(s)	213, 228, 609
MspR9I	CCNGG	2 cut(s)	425, 609
Mva1269I	GAATGC	2 cut(s)	30, 707
MvaI	CCWGG	1 cut(s)	425
MwoI	GCNNNNNNNGC	1 cut(s)	228
NciI	CCSGG	1 cut(s)	609
NdeII	GATC	2 cut(s)	192, 510
NlaIII	CATG	2 cut(s)	671, 711
NlaIV	GGNNCC	2 cut(s)	440, 607
NmeAIII	GCCGAG	1 cut(s)	270
NmuCI	GTSAC	1 cut(s)	223
PctI	GAATGC	2 cut(s)	30, 707
PfeI	GAWTC	1 cut(s)	169
Pfl23II	CGTACG	1 cut(s)	45
PflFI	GACNNNGTC	1 cut(s)	494
PfoI	TCCNGGA	1 cut(s)	423
PkrI	GCNGC	3 cut(s)	233, 271, 600
PleI	GAGTC	2 cut(s)	191, 308
PmaCI	CACGTG	1 cut(s)	249
PmlI	CACGTG	1 cut(s)	249
PpsI	GAGTC	2 cut(s)	191, 308
Ppu21I	YACGTR	1 cut(s)	249
PpuMI	RGGWCCY	1 cut(s)	605
Psp5II	RGGWCCY	1 cut(s)	605
Psp6I	CCWGG	1 cut(s)	423
PspCI	CACGTG	1 cut(s)	249
PspFI	CCCAGC	1 cut(s)	553
PspGI	CCWGG	1 cut(s)	423
PspLI	CGTACG	1 cut(s)	45
PspN4I	GGNNCC	2 cut(s)	440, 607
PspPI	GGNCC	1 cut(s)	605
PspPPI	RGGWCCY	1 cut(s)	605
PsuI	RGATCY	1 cut(s)	510
PsyI	GACNNNGTC	1 cut(s)	494
RsaI	GTAC	3 cut(s)	47, 143, 367
RsaNI	GTAC	3 cut(s)	46, 142, 366
SalI	GTCGAC	1 cut(s)	488
SaqAI	TTAA	2 cut(s)	147, 239
SatI	GCNGC	3 cut(s)	232, 270, 599
Sau3AI	GATC	2 cut(s)	192, 510
Sau96I	GGNCC	1 cut(s)	605
ScaI	AGTACT	1 cut(s)	367
SchI	GAGTC	2 cut(s)	191, 308
ScrFI	CCNGG	2 cut(s)	425, 609
SduI	GDGCHC	1 cut(s)	351
SetI	ASST	9 cut(s)	138, 251, 285, 291, 348, 407, 489, 607, 691
SfaNI	GCATC	3 cut(s)	212, 567, 585
SinI	GGWCC	1 cut(s)	605
Sse9I	AATT	5 cut(s)	50, 457, 545, 641, 678
SsiI	CCGC	2 cut(s)	201, 270
StyD4I	CCNGG	2 cut(s)	423, 607
TaaI	ACNGT	3 cut(s)	9, 71, 494
TaiI	ACGT	4 cut(s)	251, 348, 407, 489
TaqI	TCGA	4 cut(s)	195, 312, 489, 593
TaqII	GACCGA	1 cut(s)	196
TasI	AATT	5 cut(s)	50, 457, 545, 641, 678
TatI	WGTACW	2 cut(s)	141, 365
TauI	GCSGC	1 cut(s)	272
TfiI	GAWTC	1 cut(s)	169
Tru1I	TTAA	2 cut(s)	147, 239
Tru9I	TTAA	2 cut(s)	147, 239
TscAI	CASTG	1 cut(s)	679
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	2 cut(s)	231, 598
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	1 cut(s)	182
TspGWI	ACGGA	1 cut(s)	33
TspRI	CASTG	1 cut(s)	679
Tth111I	GACNNNGTC	1 cut(s)	494
VpaK11BI	GGWCC	1 cut(s)	605
XapI	RAATTY	4 cut(s)	50, 545, 641, 678
XmiI	GTMKAC	2 cut(s)	109, 489
ZraI	GACGTC	1 cut(s)	487
ZrmI	AGTACT	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.