Rroxscaffold_6G00409790

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0002155
Physical Location & Seq
Reverse (-)
32292609 .. 32293565
957 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00409790.1

Sequence Viewer

Length: 714 bp
ATGTCAGAGTTTCGTCGTCTTCCTCCTGTCTCCCCCACCGACTGGTACTCAGACGACCGTCCTCCGGCAAGCGACTCAGACCGCTTGATTGGCGCTGCGTTCATGGCGAGCTTGCTCATCGCGATCCTCGCCATCTGGTTTGCGTACGACTACAAGTTGGATCGCGCCTTCAGTCCTGAATTACCCTGTTTCCAGATTCATTCGGCTTCGGTGTCTGGACTGAGCGCCACCGAGTTAATTACCTGGTGGAACATCACCCTCCTCACCACAAACCCTAACCGCAACCTGGGCGTCGACTATCGCTACATATTCCCCTCCCTCTATTATGGAGACCAGGAGGATTATTTCAACAGCCCACGCTGGTTTAAGAACAATCAGATTGTGGCAACCAAAAAGTTGTCTCGCTCATTCTTCTTGGACAAGGGAGGGAACCAAACCTCCCTTGTCAATTTCAATCTAGTCGCAGTATTGAGTGAGGACGTCGACTATGAGTTGGCTGAGCAAATCTCAGAGGAGCTGGCTCTTCGTGGCTCAGTCAAACTTGGGCTCTATATCAAGCTTGAGTTTGGTTATAGAACTGAGGAGAATTATTTGCACTTCAGGGGGCCCATGCAATGTAGCTTCTTCTGTAATCAGGTCGAATTTATGTTTGCCCCGAATAACAATGGCACTGGGATTTTCACAGGTCACTCGAGGGAATGCACACTTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

237

Amino Acids

27.12

Weight (kDa)

5.01

Isoelectric Point (pI)

38.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 483
AccB7I CCANNNNNTGG 1 cut(s) 42
AccI GTMKAC 2 cut(s) 294, 483
AccII CGCG 2 cut(s) 122, 165
AciI CCGC 2 cut(s) 82, 280
AclWI GGATC 2 cut(s) 118, 168
AcsI RAATTY 1 cut(s) 641
AcuI CTGAAG 2 cut(s) 154, 583
AcyI GRCGYC 2 cut(s) 291, 480
AfaI GTAC 2 cut(s) 47, 146
AfiI CCNNNNNNNGG 3 cut(s) 42, 64, 286
AgsI TTSAA 2 cut(s) 349, 454
AjnI CCWGG 3 cut(s) 242, 285, 333
AloI GAACNNNNNNTCC 2 cut(s) 422, 454
AluBI AGCT 4 cut(s) 111, 517, 559, 621
AluI AGCT 4 cut(s) 111, 517, 559, 621
Alw26I GTCTC 3 cut(s) 34, 324, 405
AlwI GGATC 2 cut(s) 118, 168
Ama87I CYCGRG 1 cut(s) 691
AoxI GGCC 1 cut(s) 605
ApaI GGGCCC 1 cut(s) 609
ApeKI GCWGC 1 cut(s) 95
ApoI RAATTY 1 cut(s) 641
AspLEI GCGC 3 cut(s) 95, 167, 227
AspS9I GGNCC 2 cut(s) 605, 606
AsuHPI GGTGA 2 cut(s) 247, 256
AvaI CYCGRG 1 cut(s) 691
BaeGI GKGCMC 1 cut(s) 609
BanII GRGCYC 2 cut(s) 549, 609
BbsI GAAGAC 1 cut(s) 11
BbvI GCAGC 1 cut(s) 82
BccI CCATC 1 cut(s) 140
BciT130I CCWGG 3 cut(s) 244, 287, 335
BcoDI GTCTC 3 cut(s) 34, 324, 405
BfaI CTAG 1 cut(s) 458
BfoI RGCGCY 2 cut(s) 96, 228
BisI GCNGC 1 cut(s) 96
BlpI GCTNAGC 1 cut(s) 498
BlsI GCNGC 1 cut(s) 97
Bme1390I CCNGG 3 cut(s) 244, 287, 335
BmeT110I CYCGRG 1 cut(s) 691
BmgT120I GGNCC 2 cut(s) 605, 606
BmiI GGNNCC 3 cut(s) 431, 606, 607
BmrFI CCNGG 3 cut(s) 244, 287, 335
BmrI ACTGGG 1 cut(s) 681
BmuI ACTGGG 1 cut(s) 681
BoxI GACNNNNGTC 1 cut(s) 57
BpiI GAAGAC 1 cut(s) 11
BplI GAGNNNNNCTC 2 cut(s) 491, 523
Bpu1102I GCTNAGC 1 cut(s) 498
BpuEI CTTGAG 1 cut(s) 581
BsaHI GRCGYC 2 cut(s) 291, 480
BsaI GGTCTC 1 cut(s) 324
BsaJI CCNNGG 1 cut(s) 286
BsaXI ACNNNNNCTCC 2 cut(s) 422, 452
Bsc4I CCNNNNNNNGG 3 cut(s) 42, 64, 286
Bse1I ACTGG 2 cut(s) 47, 676
Bse3DI GCAATG 1 cut(s) 620
BseBI CCWGG 3 cut(s) 244, 287, 335
BseDI CCNNGG 1 cut(s) 286
BseLI CCNNNNNNNGG 3 cut(s) 42, 64, 286
BseMI GCAATG 1 cut(s) 620
BseMII CTCAG 7 cut(s) 63, 90, 212, 489, 522, 546, 570
BseNI ACTGG 2 cut(s) 47, 676
BseRI GAGGAG 3 cut(s) 251, 527, 596
BseSI GKGCMC 1 cut(s) 609
BseXI GCAGC 1 cut(s) 82
Bsh1236I CGCG 2 cut(s) 122, 165
Bsh1285I CGRYCG 1 cut(s) 58
BshFI GGCC 1 cut(s) 607
BsiEI CGRYCG 1 cut(s) 58
BsiHKCI CYCGRG 1 cut(s) 691
BsiSI CCGG 1 cut(s) 65
BsiWI CGTACG 1 cut(s) 144
BslI CCNNNNNNNGG 3 cut(s) 42, 64, 286
BsmAI GTCTC 3 cut(s) 34, 324, 405
BsmI GAATGC 1 cut(s) 704
BsnI GGCC 1 cut(s) 607
Bso31I GGTCTC 1 cut(s) 324
BsoBI CYCGRG 1 cut(s) 691
Bsp120I GGGCCC 1 cut(s) 605
Bsp1286I GDGCHC 2 cut(s) 549, 609
Bsp143I GATC 2 cut(s) 123, 160
Bsp1720I GCTNAGC 1 cut(s) 498
Bsp68I TCGCGA 1 cut(s) 122
BspACI CCGC 2 cut(s) 82, 280
BspANI GGCC 1 cut(s) 607
BspCNI CTCAG 7 cut(s) 62, 89, 213, 490, 521, 545, 571
BspFNI CGCG 2 cut(s) 122, 165
BspLI GGNNCC 3 cut(s) 431, 606, 607
BspPI GGATC 2 cut(s) 118, 168
BspQI GCTCTTC 1 cut(s) 528
BspTNI GGTCTC 1 cut(s) 324
BsrDI GCAATG 1 cut(s) 620
BsrI ACTGG 2 cut(s) 47, 676
BssECI CCNNGG 1 cut(s) 286
BssMI GATC 2 cut(s) 123, 160
BssNI GRCGYC 2 cut(s) 291, 480
Bst2UI CCWGG 3 cut(s) 244, 287, 335
Bst4CI ACNGT 1 cut(s) 59
Bst6I CTCTTC 1 cut(s) 528
BstACI GRCGYC 2 cut(s) 291, 480
BstC8I GCNNGC 4 cut(s) 70, 109, 113, 519
BstDEI CTNAG 8 cut(s) 49, 76, 221, 498, 508, 532, 579, 711
BstFNI CGCG 2 cut(s) 122, 165
BstH2I RGCGCY 2 cut(s) 96, 228
BstHHI GCGC 3 cut(s) 95, 167, 227
BstKTI GATC 2 cut(s) 126, 163
BstMAI GTCTC 3 cut(s) 34, 324, 405
BstMBI GATC 2 cut(s) 123, 160
BstMCI CGRYCG 1 cut(s) 58
BstMWI GCNNNNNNNGC 4 cut(s) 90, 104, 128, 288
BstNI CCWGG 3 cut(s) 244, 287, 335
BstPAI GACNNNNGTC 1 cut(s) 57
BstSCI CCNGG 3 cut(s) 242, 285, 333
BstSLI GKGCMC 1 cut(s) 609
BstUI CGCG 2 cut(s) 122, 165
BstV1I GCAGC 1 cut(s) 82
BstV2I GAAGAC 1 cut(s) 11
BsuRI GGCC 1 cut(s) 607
BtgZI GCGATG 1 cut(s) 103
BtsIMutI CAGTG 1 cut(s) 669
BtuMI TCGCGA 1 cut(s) 122
Cac8I GCNNGC 4 cut(s) 70, 109, 113, 519
CfoI GCGC 3 cut(s) 95, 167, 227
Cfr13I GGNCC 2 cut(s) 605, 606
CseI GACGC 1 cut(s) 280
CsiI ACCWGGT 1 cut(s) 242
Csp6I GTAC 2 cut(s) 46, 145
CviAII CATG 2 cut(s) 103, 610
CviQI GTAC 2 cut(s) 46, 145
DdeI CTNAG 8 cut(s) 49, 76, 221, 498, 508, 532, 579, 711
DpnI GATC 2 cut(s) 125, 162
DpnII GATC 2 cut(s) 123, 160
Eam1104I CTCTTC 1 cut(s) 528
EarI CTCTTC 1 cut(s) 528
Eco24I GRGCYC 2 cut(s) 549, 609
Eco31I GGTCTC 1 cut(s) 324
Eco57I CTGAAG 2 cut(s) 154, 583
Eco88I CYCGRG 1 cut(s) 691
EcoO109I RGGNCCY 1 cut(s) 605
EcoRII CCWGG 3 cut(s) 242, 285, 333
EcoT38I GRGCYC 2 cut(s) 549, 609
FaeI CATG 2 cut(s) 106, 613
FaiI YATR 8 cut(s) 104, 308, 327, 489, 552, 573, 611, 647
FatI CATG 2 cut(s) 102, 609
FblI GTMKAC 2 cut(s) 294, 483
Fnu4HI GCNGC 1 cut(s) 96
FriOI GRGCYC 2 cut(s) 549, 609
Fsp4HI GCNGC 1 cut(s) 96
FspBI CTAG 1 cut(s) 458
GlaI GCGC 3 cut(s) 94, 166, 226
GluI GCNGC 1 cut(s) 96
HaeII RGCGCY 2 cut(s) 96, 228
HaeIII GGCC 1 cut(s) 607
HapII CCGG 1 cut(s) 65
HgaI GACGC 1 cut(s) 280
HhaI GCGC 3 cut(s) 95, 167, 227
Hin1I GRCGYC 2 cut(s) 291, 480
Hin1II CATG 2 cut(s) 106, 613
Hin6I GCGC 3 cut(s) 93, 165, 225
HinP1I GCGC 3 cut(s) 93, 165, 225
HincII GTYRAC 2 cut(s) 295, 484
HindII GTYRAC 2 cut(s) 295, 484
HindIII AAGCTT 1 cut(s) 557
HinfI GANTC 2 cut(s) 74, 196
HpaII CCGG 1 cut(s) 65
HphI GGTGA 2 cut(s) 247, 256
Hpy166II GTNNAC 2 cut(s) 295, 484
Hpy188I TCNGA 5 cut(s) 7, 52, 79, 378, 511
Hpy188III TCNNGA 4 cut(s) 121, 176, 193, 216
Hpy8I GTNNAC 2 cut(s) 295, 484
Hpy99I CGWCG 3 cut(s) 18, 296, 485
HpyAV CCTTC 1 cut(s) 178
HpyCH4III ACNGT 1 cut(s) 59
HpyCH4IV ACGT 1 cut(s) 480
HpyCH4V TGCA 3 cut(s) 595, 613, 702
HpyF10VI GCNNNNNNNGC 4 cut(s) 90, 104, 128, 288
HpyF3I CTNAG 8 cut(s) 49, 76, 221, 498, 508, 532, 579, 711
HpySE526I ACGT 1 cut(s) 480
Hsp92I GRCGYC 2 cut(s) 291, 480
Hsp92II CATG 2 cut(s) 106, 613
HspAI GCGC 3 cut(s) 93, 165, 225
Kzo9I GATC 2 cut(s) 123, 160
LguI GCTCTTC 1 cut(s) 528
LmnI GCTCC 1 cut(s) 514
Lsp1109I GCAGC 1 cut(s) 82
MabI ACCWGGT 1 cut(s) 242
MaeI CTAG 1 cut(s) 458
MaeII ACGT 1 cut(s) 480
MaeIII GTNAC 1 cut(s) 686
MalI GATC 2 cut(s) 125, 162
MboI GATC 2 cut(s) 123, 160
MboII GAAGA 4 cut(s) 11, 403, 515, 616
MhlI GDGCHC 2 cut(s) 549, 609
MluCI AATT 5 cut(s) 179, 237, 448, 586, 641
MlyI GAGTC 1 cut(s) 68
MmeI TCCRAC 1 cut(s) 138
MseI TTAA 2 cut(s) 236, 366
MspI CCGG 1 cut(s) 65
MspR9I CCNGG 3 cut(s) 244, 287, 335
Mva1269I GAATGC 1 cut(s) 704
MvaI CCWGG 3 cut(s) 244, 287, 335
MvnI CGCG 2 cut(s) 122, 165
MwoI GCNNNNNNNGC 4 cut(s) 90, 104, 128, 288
NdeII GATC 2 cut(s) 123, 160
NlaIII CATG 2 cut(s) 106, 613
NlaIV GGNNCC 3 cut(s) 431, 606, 607
NmuCI GTSAC 1 cut(s) 686
NruI TCGCGA 1 cut(s) 122
PaeR7I CTCGAG 1 cut(s) 691
PciSI GCTCTTC 1 cut(s) 528
PctI GAATGC 1 cut(s) 704
PfeI GAWTC 1 cut(s) 196
Pfl23II CGTACG 1 cut(s) 144
PflMI CCANNNNNTGG 1 cut(s) 42
PkrI GCNGC 1 cut(s) 97
PleI GAGTC 1 cut(s) 68
PpsI GAGTC 1 cut(s) 68
PshAI GACNNNNGTC 1 cut(s) 57
Psp6I CCWGG 3 cut(s) 242, 285, 333
PspGI CCWGG 3 cut(s) 242, 285, 333
PspLI CGTACG 1 cut(s) 144
PspN4I GGNNCC 3 cut(s) 431, 606, 607
PspOMI GGGCCC 1 cut(s) 605
PspPI GGNCC 2 cut(s) 605, 606
PspXI VCTCGAGB 1 cut(s) 691
RruI TCGCGA 1 cut(s) 122
RsaI GTAC 2 cut(s) 47, 146
RsaNI GTAC 2 cut(s) 46, 145
SalI GTCGAC 2 cut(s) 293, 482
SapI GCTCTTC 1 cut(s) 528
SaqAI TTAA 2 cut(s) 236, 366
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 2 cut(s) 123, 160
Sau96I GGNCC 2 cut(s) 605, 606
SchI GAGTC 1 cut(s) 68
ScrFI CCNGG 3 cut(s) 244, 287, 335
SduI GDGCHC 2 cut(s) 549, 609
SexAI ACCWGGT 1 cut(s) 242
Sfr274I CTCGAG 1 cut(s) 691
SlaI CTCGAG 1 cut(s) 691
SmlI CTYRAG 2 cut(s) 560, 691
SmoI CTYRAG 2 cut(s) 560, 691
Sse9I AATT 5 cut(s) 179, 237, 448, 586, 641
SsiI CCGC 2 cut(s) 82, 280
SspMI CTAG 1 cut(s) 458
StyD4I CCNGG 3 cut(s) 242, 285, 333
TaaI ACNGT 1 cut(s) 59
TaiI ACGT 1 cut(s) 483
TaqI TCGA 4 cut(s) 294, 483, 639, 692
TasI AATT 5 cut(s) 179, 237, 448, 586, 641
TfiI GAWTC 1 cut(s) 196
Tru1I TTAA 2 cut(s) 236, 366
Tru9I TTAA 2 cut(s) 236, 366
TscAI CASTG 1 cut(s) 676
TseFI GTSAC 1 cut(s) 686
TseI GCWGC 1 cut(s) 95
Tsp45I GTSAC 1 cut(s) 686
TspDTI ATGAA 2 cut(s) 91, 188
TspRI CASTG 1 cut(s) 676
Van91I CCANNNNNTGG 1 cut(s) 42
XapI RAATTY 1 cut(s) 641
XhoI CTCGAG 1 cut(s) 691
XmiI GTMKAC 2 cut(s) 294, 483
XspI CTAG 1 cut(s) 458
ZraI GACGTC 1 cut(s) 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.