Rh6AG466900

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0002155
Physical Location & Seq
Reverse (-)
64937511 .. 64938173
663 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG466900.1

Sequence Viewer

Length: 663 bp
ATGGTAAGGGTTCTTCATCGCGACTCATACGACGAACCGATGAACCCTCACGGCGTGGGCTGTTGTATGCTCATATTGGTCAGCCTGATGACCACGCTTCTGCTGATCGACACAATTGTACATCAGTCGCTCAATCCAGAGGAACCCCAGTTCTGGGTCGACTCAGCTGCCGTGACCGGACTCGAGCTCACCAGCTCCTCCGGATTGACTGCCACGTGGAATATGACGCTCGTGGCACACAATCCCAACCGCAAGCTCATGATCGACATTGCCGGTGTCCAAGTGTTCATATATTTCGGAAAAATGGAGAAGTACTACTGGTACAACCATGGGCATCTGGTTGAGAGCCAACACATTCTGGCGACGAAGCTGTTGCCTTCTTTCTTCTTGTACACAGGAAACCAGACGAGTCTGGATTTCAAGGTCGGAGTAGCGGGGCATTGCGTGGACGGCGAGACAGCCAAGGAAGTTTCACAAGGGAAGACAGTGAAGTTCGGGGTGTTTCTGCACGTTGAGTATAAATATAGGACCAAGGTCTGGTTGATGGGAGACACTCGCCCTATTAAGCTCTTGTGCGACCAGGTCGAGTTCCTGTTGCTCCCAAATACGAATCACCACGCCGGAGTTTCCACCTGTCAGTTTCCTTGCCGCATATTTGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

220

Amino Acids

24.82

Weight (kDa)

6.58

Isoelectric Point (pI)

19.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 537
AccI GTMKAC 1 cut(s) 159
AccII CGCG 1 cut(s) 21
AccIII TCCGGA 1 cut(s) 200
AciI CCGC 3 cut(s) 250, 434, 649
AcvI CACGTG 1 cut(s) 216
AdeI CACNNNGTG 1 cut(s) 55
AfaI GTAC 4 cut(s) 120, 314, 323, 392
AfiI CCNNNNNNNGG 3 cut(s) 153, 154, 537
AgsI TTSAA 1 cut(s) 421
AjnI CCWGG 1 cut(s) 579
AloI GAACNNNNNNTCC 2 cut(s) 134, 166
AluBI AGCT 6 cut(s) 167, 187, 195, 256, 370, 568
AluI AGCT 6 cut(s) 167, 187, 195, 256, 370, 568
Alw21I GWGCWC 1 cut(s) 189
Alw26I GTCTC 2 cut(s) 449, 543
Ama87I CYCGRG 1 cut(s) 182
Aor13HI TCCGGA 1 cut(s) 200
ApeKI GCWGC 1 cut(s) 167
AspS9I GGNCC 1 cut(s) 528
AsuHPI GGTGA 2 cut(s) 181, 605
AvaI CYCGRG 1 cut(s) 182
AvaII GGWCC 1 cut(s) 528
BanII GRGCYC 1 cut(s) 189
BarI GAAGNNNNNNTAC 1 cut(s) 29
BauI CACGAG 1 cut(s) 230
BbrPI CACGTG 1 cut(s) 216
BbsI GAAGAC 1 cut(s) 488
Bbv12I GWGCWC 1 cut(s) 189
BbvI GCAGC 1 cut(s) 154
BccI CCATC 1 cut(s) 538
BceAI ACGGC 3 cut(s) 67, 155, 466
BcgI CGANNNNNNTGC 4 cut(s) 149, 183, 355, 389
BciT130I CCWGG 1 cut(s) 581
BcoDI GTCTC 2 cut(s) 449, 543
BisI GCNGC 2 cut(s) 168, 649
BlsI GCNGC 2 cut(s) 169, 650
BmcAI AGTACT 1 cut(s) 314
Bme1390I CCNGG 1 cut(s) 581
Bme18I GGWCC 1 cut(s) 528
BmeT110I CYCGRG 1 cut(s) 182
BmgT120I GGNCC 1 cut(s) 528
BmiI GGNNCC 1 cut(s) 144
BmrFI CCNGG 1 cut(s) 581
BmrI ACTGGG 1 cut(s) 142
BmsI GCATC 1 cut(s) 343
BmuI ACTGGG 1 cut(s) 142
BoxI GACNNNNGTC 1 cut(s) 533
BpiI GAAGAC 1 cut(s) 488
BsaAI YACGTR 1 cut(s) 216
BsaJI CCNNGG 3 cut(s) 328, 462, 531
BsaWI WCCGGW 2 cut(s) 176, 200
Bsc4I CCNNNNNNNGG 3 cut(s) 153, 154, 537
Bse118I RCCGGY 1 cut(s) 272
Bse1I ACTGG 2 cut(s) 148, 323
Bse3DI GCAATG 2 cut(s) 267, 439
BseAI TCCGGA 1 cut(s) 200
BseBI CCWGG 1 cut(s) 581
BseDI CCNNGG 3 cut(s) 328, 462, 531
BseLI CCNNNNNNNGG 3 cut(s) 153, 154, 537
BseMI GCAATG 2 cut(s) 267, 439
BseMII CTCAG 1 cut(s) 177
BseNI ACTGG 2 cut(s) 148, 323
BseRI GAGGAG 1 cut(s) 187
BseXI GCAGC 1 cut(s) 154
BsgI GTGCAG 1 cut(s) 491
Bsh1236I CGCG 1 cut(s) 21
BsiHKAI GWGCWC 1 cut(s) 189
BsiHKCI CYCGRG 1 cut(s) 182
BsiSI CCGG 4 cut(s) 177, 201, 273, 621
BslI CCNNNNNNNGG 3 cut(s) 153, 154, 537
BsmAI GTCTC 2 cut(s) 449, 543
BsoBI CYCGRG 1 cut(s) 182
Bsp1286I GDGCHC 1 cut(s) 189
Bsp13I TCCGGA 1 cut(s) 200
Bsp1407I TGTACA 2 cut(s) 118, 390
Bsp143I GATC 2 cut(s) 105, 261
Bsp19I CCATGG 1 cut(s) 328
Bsp68I TCGCGA 1 cut(s) 21
BspACI CCGC 3 cut(s) 250, 434, 649
BspCNI CTCAG 1 cut(s) 176
BspEI TCCGGA 1 cut(s) 200
BspFNI CGCG 1 cut(s) 21
BspHI TCATGA 1 cut(s) 258
BspLI GGNNCC 1 cut(s) 144
BsrDI GCAATG 2 cut(s) 267, 439
BsrFI RCCGGY 1 cut(s) 272
BsrGI TGTACA 2 cut(s) 118, 390
BsrI ACTGG 2 cut(s) 148, 323
BssAI RCCGGY 1 cut(s) 272
BssECI CCNNGG 3 cut(s) 328, 462, 531
BssMI GATC 2 cut(s) 105, 261
BssSI CACGAG 1 cut(s) 230
BssT1I CCWWGG 3 cut(s) 328, 462, 531
Bst2BI CACGAG 1 cut(s) 230
Bst2UI CCWGG 1 cut(s) 581
Bst4CI ACNGT 1 cut(s) 487
BstAUI TGTACA 2 cut(s) 118, 390
BstBAI YACGTR 1 cut(s) 216
BstC8I GCNNGC 1 cut(s) 254
BstDEI CTNAG 1 cut(s) 163
BstDSI CCRYGG 1 cut(s) 328
BstFNI CGCG 1 cut(s) 21
BstKTI GATC 2 cut(s) 108, 264
BstMAI GTCTC 2 cut(s) 449, 543
BstMBI GATC 2 cut(s) 105, 261
BstMWI GCNNNNNNNGC 1 cut(s) 450
BstNI CCWGG 1 cut(s) 581
BstPAI GACNNNNGTC 1 cut(s) 533
BstSCI CCNGG 1 cut(s) 579
BstUI CGCG 1 cut(s) 21
BstV1I GCAGC 1 cut(s) 154
BstV2I GAAGAC 1 cut(s) 488
BtgI CCRYGG 1 cut(s) 328
BtgZI GCGATG 1 cut(s) 2
BtsIMutI CAGTG 1 cut(s) 492
BtuMI TCGCGA 1 cut(s) 21
Cac8I GCNNGC 1 cut(s) 254
CciI TCATGA 1 cut(s) 258
Cfr10I RCCGGY 1 cut(s) 272
Cfr13I GGNCC 1 cut(s) 528
CseI GACGC 1 cut(s) 235
CsiI ACCWGGT 1 cut(s) 579
Csp6I GTAC 4 cut(s) 119, 313, 322, 391
CviAII CATG 2 cut(s) 259, 329
CviQI GTAC 4 cut(s) 119, 313, 322, 391
DdeI CTNAG 1 cut(s) 163
DpnI GATC 2 cut(s) 107, 263
DpnII GATC 2 cut(s) 105, 261
DraIII CACNNNGTG 1 cut(s) 55
Ecl136II GAGCTC 1 cut(s) 187
Eco130I CCWWGG 3 cut(s) 328, 462, 531
Eco24I GRGCYC 1 cut(s) 189
Eco47I GGWCC 1 cut(s) 528
Eco53kI GAGCTC 1 cut(s) 187
Eco72I CACGTG 1 cut(s) 216
Eco88I CYCGRG 1 cut(s) 182
EcoICRI GAGCTC 1 cut(s) 187
EcoRII CCWGG 1 cut(s) 579
EcoT14I CCWWGG 3 cut(s) 328, 462, 531
EcoT38I GRGCYC 1 cut(s) 189
ErhI CCWWGG 3 cut(s) 328, 462, 531
FaeI CATG 2 cut(s) 262, 332
FatI CATG 2 cut(s) 258, 328
FauI CCCGC 1 cut(s) 427
FblI GTMKAC 1 cut(s) 159
Fnu4HI GCNGC 2 cut(s) 168, 649
FriOI GRGCYC 1 cut(s) 189
Fsp4HI GCNGC 2 cut(s) 168, 649
GluI GCNGC 2 cut(s) 168, 649
HapII CCGG 4 cut(s) 177, 201, 273, 621
HgaI GACGC 1 cut(s) 235
Hin1II CATG 2 cut(s) 262, 332
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HinfI GANTC 5 cut(s) 23, 161, 180, 409, 610
HpaII CCGG 4 cut(s) 177, 201, 273, 621
HphI GGTGA 2 cut(s) 181, 605
Hpy166II GTNNAC 3 cut(s) 160, 393, 448
Hpy188I TCNGA 2 cut(s) 299, 428
Hpy188III TCNNGA 5 cut(s) 20, 137, 201, 259, 413
Hpy8I GTNNAC 3 cut(s) 160, 393, 448
Hpy99I CGWCG 2 cut(s) 35, 367
HpyAV CCTTC 1 cut(s) 387
HpyCH4III ACNGT 1 cut(s) 487
HpyCH4IV ACGT 2 cut(s) 215, 510
HpyCH4V TGCA 1 cut(s) 508
HpyF10VI GCNNNNNNNGC 1 cut(s) 450
HpyF3I CTNAG 1 cut(s) 163
HpySE526I ACGT 2 cut(s) 215, 510
Hsp92II CATG 2 cut(s) 262, 332
Kpn2I TCCGGA 1 cut(s) 200
Kzo9I GATC 2 cut(s) 105, 261
LmnI GCTCC 2 cut(s) 200, 603
Lsp1109I GCAGC 1 cut(s) 154
LweI GCATC 1 cut(s) 343
MabI ACCWGGT 1 cut(s) 579
MaeII ACGT 2 cut(s) 215, 510
MaeIII GTNAC 1 cut(s) 172
MalI GATC 2 cut(s) 107, 263
MboI GATC 2 cut(s) 105, 261
MboII GAAGA 3 cut(s) 5, 376, 493
MfeI CAATTG 1 cut(s) 114
MhlI GDGCHC 1 cut(s) 189
MluCI AATT 1 cut(s) 114
MlyI GAGTC 4 cut(s) 17, 155, 174, 418
MmeI TCCRAC 1 cut(s) 406
MnlI CCTC 3 cut(s) 57, 133, 208
MroI TCCGGA 1 cut(s) 200
MseI TTAA 1 cut(s) 564
MspA1I CMGCKG 1 cut(s) 167
MspI CCGG 4 cut(s) 177, 201, 273, 621
MspR9I CCNGG 1 cut(s) 581
MunI CAATTG 1 cut(s) 114
MvaI CCWGG 1 cut(s) 581
MvnI CGCG 1 cut(s) 21
MwoI GCNNNNNNNGC 1 cut(s) 450
NcoI CCATGG 1 cut(s) 328
NdeII GATC 2 cut(s) 105, 261
NlaIII CATG 2 cut(s) 262, 332
NlaIV GGNNCC 1 cut(s) 144
NmuCI GTSAC 1 cut(s) 172
NruI TCGCGA 1 cut(s) 21
PaeR7I CTCGAG 1 cut(s) 182
PagI TCATGA 1 cut(s) 258
PfeI GAWTC 1 cut(s) 610
PflFI GACNNNGTC 1 cut(s) 581
PflMI CCANNNNNTGG 1 cut(s) 537
PkrI GCNGC 2 cut(s) 169, 650
PleI GAGTC 4 cut(s) 17, 155, 174, 417
PmaCI CACGTG 1 cut(s) 216
PmlI CACGTG 1 cut(s) 216
PpsI GAGTC 4 cut(s) 17, 155, 174, 417
Ppu21I YACGTR 1 cut(s) 216
PshAI GACNNNNGTC 1 cut(s) 533
Psp124BI GAGCTC 1 cut(s) 189
Psp6I CCWGG 1 cut(s) 579
PspCI CACGTG 1 cut(s) 216
PspGI CCWGG 1 cut(s) 579
PspN4I GGNNCC 1 cut(s) 144
PspPI GGNCC 1 cut(s) 528
PspXI VCTCGAGB 1 cut(s) 182
PsyI GACNNNGTC 1 cut(s) 581
PvuII CAGCTG 1 cut(s) 167
RruI TCGCGA 1 cut(s) 21
RsaI GTAC 4 cut(s) 120, 314, 323, 392
RsaNI GTAC 4 cut(s) 119, 313, 322, 391
SacI GAGCTC 1 cut(s) 189
SalI GTCGAC 1 cut(s) 158
SaqAI TTAA 1 cut(s) 564
SatI GCNGC 2 cut(s) 168, 649
Sau3AI GATC 2 cut(s) 105, 261
Sau96I GGNCC 1 cut(s) 528
ScaI AGTACT 1 cut(s) 314
SchI GAGTC 4 cut(s) 17, 155, 174, 418
ScrFI CCNGG 1 cut(s) 581
SduI GDGCHC 1 cut(s) 189
SexAI ACCWGGT 1 cut(s) 579
SfaNI GCATC 1 cut(s) 343
Sfr274I CTCGAG 1 cut(s) 182
SinI GGWCC 1 cut(s) 528
SlaI CTCGAG 1 cut(s) 182
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
Sse9I AATT 1 cut(s) 114
SsiI CCGC 3 cut(s) 250, 434, 649
SstI GAGCTC 1 cut(s) 189
StyD4I CCNGG 1 cut(s) 579
StyI CCWWGG 3 cut(s) 328, 462, 531
TaaI ACNGT 1 cut(s) 487
TaiI ACGT 2 cut(s) 218, 513
TaqI TCGA 5 cut(s) 108, 159, 183, 264, 585
TasI AATT 1 cut(s) 114
TatI WGTACW 3 cut(s) 118, 312, 390
TauI GCSGC 1 cut(s) 651
TfiI GAWTC 1 cut(s) 610
Tru1I TTAA 1 cut(s) 564
Tru9I TTAA 1 cut(s) 564
TscAI CASTG 1 cut(s) 492
TseFI GTSAC 1 cut(s) 172
TseI GCWGC 1 cut(s) 167
Tsp45I GTSAC 1 cut(s) 172
TspDTI ATGAA 3 cut(s) 5, 56, 277
TspRI CASTG 1 cut(s) 492
Tth111I GACNNNGTC 1 cut(s) 581
Van91I CCANNNNNTGG 1 cut(s) 537
VpaK11BI GGWCC 1 cut(s) 528
XhoI CTCGAG 1 cut(s) 182
XmiI GTMKAC 1 cut(s) 159
ZrmI AGTACT 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.