Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0002155

Physical Location & Seq

Genomic Coordinates Reverse (-)

16129210 .. 16131895

Gene Structure 2686 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG181700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGTGGCTGCTTGTGTGCTATTTTCTTTCGTGTTCATTGGAATCTTATTAATACACTACCTCATCCTGTTTGTCCGATCAACGGCGGACGATGTGTCCGAACTTGCATATCCCCATTTTCGGATCGACTCAGCTGCCATGTTCGAACTGGAGACGACTGACTACGATTTGAGTGTGACATGGAGCTTTACACTCGTCACTTCATACCCTAATTATGGAAAGCTAGCCATTTTCGACCGTGTCCGACCATTCGTTTACTACTGCCCCAAAGGCTACATGTATTATGGGGATGAGTACAAGTACTCTCTGGCAAAGACGAAGTTGCCTCCTTTTTTTTTATGTACGGAGGGAACCAAACCCAGCTCGATTTCAAGGTCGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

127

Amino Acids

14.65

Weight (kDa)

5.63

Isoelectric Point (pI)

49.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002155)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g17371
rosa_chinensis	RchiOBHm_Chr3g0471371 RchiOBHm_Chr3g0471581
rosa_laevigata	RLG00000010740 RLG00000015053 RLG00000024155 RLG00000024164 RLG00000024165 RLG00000024167 RLG00000024171 RLG00000024183
rosa_multiflora	Rmu_sc0005634.1_g000007 Rmu_sc0006582.1_g000002 Rmu_sc0006582.1_g000017 Rmu_sc0010513.1_g000002
rosa_roxburghii	Rroxscaffold_6G00409790 Rroxscaffold_6G00409870 Rroxscaffold_6G00410010 Rroxscaffold_7G00161210
rosa_rugosa	Rorug03G0118400
rosa_samantha	Rh3AG168200 Rh3AG168600 Rh3AG168800 Rh3BG192600 Rh3BG193800 Rh3BG194100 Rh3BG194400 Rh3BG194600 Rh3CG182900 Rh3CG184700 Rh3CG184800 Rh3CG185000 Rh3CG185200 Rh3CG185300 Rh3DG180200 Rh3DG180400 Rh3DG180800 Rh3DG181000 Rh3DG181700 Rh3DG183000 Rh6AG466900 Rh6DG468700
rosa_wichuraiana	Rw3G015740 Rw6G040700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	86
AclWI	GGATC	1 cut(s)	131
AfaI	GTAC	3 cut(s)	296, 302, 343
AfiI	CCNNNNNNNGG	3 cut(s)	82, 120, 215
AflIII	ACRYGT	1 cut(s)	276
AgsI	TTSAA	1 cut(s)	372
AhdI	GACNNNNNGTC	1 cut(s)	94
AluBI	AGCT	4 cut(s)	134, 186, 223, 363
AluI	AGCT	4 cut(s)	134, 186, 223, 363
Alw26I	GTCTC	1 cut(s)	146
AlwI	GGATC	1 cut(s)	131
ApeKI	GCWGC	2 cut(s)	8, 134
AseI	ATTAAT	1 cut(s)	50
AsuII	TTCGAA	1 cut(s)	144
AsuNHI	GCTAGC	1 cut(s)	223
BbvI	GCAGC	1 cut(s)	121
BceAI	ACGGC	1 cut(s)	99
BcgI	CGANNNNNNTGC	2 cut(s)	116, 150
BcoDI	GTCTC	1 cut(s)	146
BfaI	CTAG	1 cut(s)	224
BglI	GCCNNNNNGGC	1 cut(s)	270
BisI	GCNGC	2 cut(s)	9, 135
BlsI	GCNGC	2 cut(s)	10, 136
BmcAI	AGTACT	1 cut(s)	302
BmeRI	GACNNNNNGTC	1 cut(s)	94
BmiI	GGNNCC	1 cut(s)	352
BmtI	GCTAGC	1 cut(s)	227
BpmI	CTGGAG	1 cut(s)	170
Bpu14I	TTCGAA	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	3 cut(s)	82, 120, 215
Bse1I	ACTGG	1 cut(s)	153
BseGI	GGATG	2 cut(s)	63, 295
BseLI	CCNNNNNNNGG	3 cut(s)	82, 120, 215
BseMII	CTCAG	1 cut(s)	144
BseNI	ACTGG	1 cut(s)	153
BseXI	GCAGC	1 cut(s)	121
BseYI	CCCAGC	1 cut(s)	359
Bsh1285I	CGRYCG	1 cut(s)	238
BsiEI	CGRYCG	1 cut(s)	238
BslI	CCNNNNNNNGG	3 cut(s)	82, 120, 215
BsmAI	GTCTC	1 cut(s)	146
BsmBI	CGTCTC	1 cut(s)	146
Bsp119I	TTCGAA	1 cut(s)	144
Bsp143I	GATC	2 cut(s)	77, 123
BspACI	CCGC	1 cut(s)	86
BspCNI	CTCAG	1 cut(s)	143
BspLI	GGNNCC	1 cut(s)	352
BspOI	GCTAGC	1 cut(s)	227
BspPI	GGATC	1 cut(s)	131
BspT104I	TTCGAA	1 cut(s)	144
BsrI	ACTGG	1 cut(s)	153
BssMI	GATC	2 cut(s)	77, 123
Bst4CI	ACNGT	1 cut(s)	239
BstBI	TTCGAA	1 cut(s)	144
BstC8I	GCNNGC	1 cut(s)	225
BstDEI	CTNAG	1 cut(s)	130
BstF5I	GGATG	2 cut(s)	63, 295
BstKTI	GATC	2 cut(s)	80, 126
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	2 cut(s)	77, 123
BstMCI	CGRYCG	1 cut(s)	238
BstMWI	GCNNNNNNNGC	1 cut(s)	270
BstNSI	RCATGY	1 cut(s)	280
BstV1I	GCAGC	1 cut(s)	121
BtsCI	GGATG	2 cut(s)	63, 295
Cac8I	GCNNGC	1 cut(s)	225
Csp6I	GTAC	3 cut(s)	295, 301, 342
CviAII	CATG	3 cut(s)	139, 180, 277
CviJI	RGCY	7 cut(s)	8, 134, 186, 223, 227, 273, 363
CviKI_1	RGCY	7 cut(s)	8, 134, 186, 223, 227, 273, 363
CviQI	GTAC	3 cut(s)	295, 301, 342
DdeI	CTNAG	1 cut(s)	130
DpnI	GATC	2 cut(s)	79, 125
DpnII	GATC	2 cut(s)	77, 123
DriI	GACNNNNNGTC	1 cut(s)	94
Eam1105I	GACNNNNNGTC	1 cut(s)	94
EciI	GGCGGA	1 cut(s)	101
Esp3I	CGTCTC	1 cut(s)	146
FaeI	CATG	3 cut(s)	142, 183, 280
FaiI	YATR	8 cut(s)	109, 140, 181, 205, 216, 278, 285, 340
FatI	CATG	3 cut(s)	138, 179, 276
Fnu4HI	GCNGC	2 cut(s)	9, 135
FokI	GGATG	2 cut(s)	50, 302
Fsp4HI	GCNGC	2 cut(s)	9, 135
FspBI	CTAG	1 cut(s)	224
GluI	GCNGC	2 cut(s)	9, 135
GsaI	CCCAGC	1 cut(s)	363
GsuI	CTGGAG	1 cut(s)	170
Hin1II	CATG	3 cut(s)	142, 183, 280
HinfI	GANTC	2 cut(s)	42, 128
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	5 cut(s)	77, 100, 123, 245, 379
Hpy8I	GTNNAC	1 cut(s)	256
HpyCH4III	ACNGT	1 cut(s)	239
HpyCH4V	TGCA	1 cut(s)	107
HpyF10VI	GCNNNNNNNGC	1 cut(s)	270
HpyF3I	CTNAG	1 cut(s)	130
Hsp92II	CATG	3 cut(s)	142, 183, 280
Kzo9I	GATC	2 cut(s)	77, 123
LmnI	GCTCC	1 cut(s)	183
LpnPI	CCDG	4 cut(s)	80, 134, 293, 373
Lsp1109I	GCAGC	1 cut(s)	121
MaeI	CTAG	1 cut(s)	224
MaeIII	GTNAC	2 cut(s)	175, 196
MalI	GATC	2 cut(s)	79, 125
MboI	GATC	2 cut(s)	77, 123
MluCI	AATT	1 cut(s)	211
MlyI	GAGTC	1 cut(s)	122
MmeI	TCCRAC	2 cut(s)	268, 357
MnlI	CCTC	3 cut(s)	71, 336, 340
MseI	TTAA	1 cut(s)	50
MspA1I	CMGCKG	1 cut(s)	134
MwoI	GCNNNNNNNGC	1 cut(s)	270
NdeII	GATC	2 cut(s)	77, 123
NheI	GCTAGC	1 cut(s)	223
NlaIII	CATG	3 cut(s)	142, 183, 280
NlaIV	GGNNCC	1 cut(s)	352
NmuCI	GTSAC	2 cut(s)	175, 196
NspI	RCATGY	1 cut(s)	280
NspV	TTCGAA	1 cut(s)	144
PciI	ACATGT	1 cut(s)	276
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PfeI	GAWTC	1 cut(s)	42
PflFI	GACNNNGTC	1 cut(s)	239
PkrI	GCNGC	2 cut(s)	10, 136
PleI	GAGTC	1 cut(s)	122
PpsI	GAGTC	1 cut(s)	122
PscI	ACATGT	1 cut(s)	276
PshBI	ATTAAT	1 cut(s)	50
PspFI	CCCAGC	1 cut(s)	359
PspN4I	GGNNCC	1 cut(s)	352
PsyI	GACNNNGTC	1 cut(s)	239
PvuII	CAGCTG	1 cut(s)	134
RsaI	GTAC	3 cut(s)	296, 302, 343
RsaNI	GTAC	3 cut(s)	295, 301, 342
SaqAI	TTAA	1 cut(s)	50
SatI	GCNGC	2 cut(s)	9, 135
Sau3AI	GATC	2 cut(s)	77, 123
ScaI	AGTACT	1 cut(s)	302
SchI	GAGTC	1 cut(s)	122
SetI	ASST	6 cut(s)	63, 136, 188, 225, 365, 377
SfuI	TTCGAA	1 cut(s)	144
Sse9I	AATT	1 cut(s)	211
SsiI	CCGC	1 cut(s)	86
SspMI	CTAG	1 cut(s)	224
TaaI	ACNGT	1 cut(s)	239
TaqI	TCGA	4 cut(s)	126, 144, 234, 365
TasI	AATT	1 cut(s)	211
TatI	WGTACW	2 cut(s)	294, 300
TfiI	GAWTC	1 cut(s)	42
Tru1I	TTAA	1 cut(s)	50
Tru9I	TTAA	1 cut(s)	50
TseFI	GTSAC	2 cut(s)	175, 196
TseI	GCWGC	2 cut(s)	8, 134
Tsp45I	GTSAC	2 cut(s)	175, 196
TspDTI	ATGAA	2 cut(s)	25, 192
TspGWI	ACGGA	1 cut(s)	359
Tth111I	GACNNNGTC	1 cut(s)	239
VspI	ATTAAT	1 cut(s)	50
XceI	RCATGY	1 cut(s)	280
XcmI	CCANNNNNNNNNTGG	1 cut(s)	145
XspI	CTAG	1 cut(s)	224
ZrmI	AGTACT	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.