Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0002155

Physical Location & Seq

Genomic Coordinates Reverse (-)

64475865 .. 64476527

Gene Structure 663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G040700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGTAAGGGTTCTTCATCGCGACTCATACGACGAACCGATAAACCCTCACGGCGTGGGCTGTTGTATGCTCATATTGTTCAGCCTGATGACCACGCTTCTGCTGATCGACACAATTGTACATCAGTCGCTCAATCCAGAGGAACCCCAGTTCTGGGTCGACTCAGCTGCCGTGACCGGACTCGAGCTCACCGGCTCCTCCGGATTGACTGCCACGTGGAACATGACGCTCGTGGCACACAATCCTAACCGCAAGCTCATGATCGACATCGCCGGTGTCCAAGTGTTCATATATTTCGGAAAAATGGAGAAGTACTACTGGTACAACCATGGGCATCTGGTTGAGAGCCAACACATTCTGGCGACGAAGCTGTTGCCTTCTTTCTTCTTGTACACAGGAAACCAGACGAGTCTGGATTTCAAGGTCGGAGTAGCGGGGCATTGCGTCGACGGCGAGACAGCCAAGGAAGTCTCACAAGGGAAGACAGTGAAGTTCGGGGTGTTTCTGCACGTTGAGTATAAATATAGGACCAAGGTCTGGTTGATGGGAGACACTCGCCCTATTAAGCTCTTGTGCGACCAGGTCGAGTTCCTGTTGCTCCCAAATACGAATCACCACACCGGAGTTTCCACCGGTCAGTTTCCTTGCCGCATATTTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

220

Amino Acids

24.81

Weight (kDa)

6.58

Isoelectric Point (pI)

18.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002155)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g17371
rosa_chinensis	RchiOBHm_Chr3g0471371 RchiOBHm_Chr3g0471581
rosa_laevigata	RLG00000010740 RLG00000015053 RLG00000024155 RLG00000024164 RLG00000024165 RLG00000024167 RLG00000024171 RLG00000024183
rosa_multiflora	Rmu_sc0005634.1_g000007 Rmu_sc0006582.1_g000002 Rmu_sc0006582.1_g000017 Rmu_sc0010513.1_g000002
rosa_roxburghii	Rroxscaffold_6G00409790 Rroxscaffold_6G00409870 Rroxscaffold_6G00410010 Rroxscaffold_7G00161210
rosa_rugosa	Rorug03G0118400
rosa_samantha	Rh3AG168200 Rh3AG168600 Rh3AG168800 Rh3BG192600 Rh3BG193800 Rh3BG194100 Rh3BG194400 Rh3BG194600 Rh3CG182900 Rh3CG184700 Rh3CG184800 Rh3CG185000 Rh3CG185200 Rh3CG185300 Rh3DG180200 Rh3DG180400 Rh3DG180800 Rh3DG181000 Rh3DG181700 Rh3DG183000 Rh6AG466900 Rh6DG468700
rosa_wichuraiana	Rw3G015740 Rw6G040700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	537
AccI	GTMKAC	2 cut(s)	159, 447
AccII	CGCG	1 cut(s)	21
AccIII	TCCGGA	1 cut(s)	200
AciI	CCGC	3 cut(s)	250, 434, 649
AcvI	CACGTG	1 cut(s)	216
AdeI	CACNNNGTG	1 cut(s)	55
AfaI	GTAC	4 cut(s)	120, 314, 323, 392
AfiI	CCNNNNNNNGG	3 cut(s)	153, 154, 537
AgeI	ACCGGT	1 cut(s)	632
AgsI	TTSAA	1 cut(s)	421
AjnI	CCWGG	1 cut(s)	579
AloI	GAACNNNNNNTCC	2 cut(s)	134, 166
AluBI	AGCT	5 cut(s)	167, 187, 256, 370, 568
AluI	AGCT	5 cut(s)	167, 187, 256, 370, 568
Alw21I	GWGCWC	1 cut(s)	189
Alw26I	GTCTC	3 cut(s)	449, 475, 543
Ama87I	CYCGRG	1 cut(s)	182
Aor13HI	TCCGGA	1 cut(s)	200
ApeKI	GCWGC	1 cut(s)	167
AsiGI	ACCGGT	1 cut(s)	632
AspS9I	GGNCC	1 cut(s)	528
AsuHPI	GGTGA	2 cut(s)	181, 605
AvaI	CYCGRG	1 cut(s)	182
AvaII	GGWCC	1 cut(s)	528
BanII	GRGCYC	1 cut(s)	189
BarI	GAAGNNNNNNTAC	1 cut(s)	29
BauI	CACGAG	1 cut(s)	230
BbrPI	CACGTG	1 cut(s)	216
BbsI	GAAGAC	1 cut(s)	488
Bbv12I	GWGCWC	1 cut(s)	189
BbvI	GCAGC	1 cut(s)	154
BccI	CCATC	1 cut(s)	538
BceAI	ACGGC	3 cut(s)	67, 155, 466
BcgI	CGANNNNNNTGC	4 cut(s)	149, 183, 355, 389
BciT130I	CCWGG	1 cut(s)	581
BcoDI	GTCTC	3 cut(s)	449, 475, 543
BisI	GCNGC	2 cut(s)	168, 649
BlsI	GCNGC	2 cut(s)	169, 650
BmcAI	AGTACT	1 cut(s)	314
Bme1390I	CCNGG	1 cut(s)	581
Bme18I	GGWCC	1 cut(s)	528
BmeT110I	CYCGRG	1 cut(s)	182
BmgT120I	GGNCC	1 cut(s)	528
BmiI	GGNNCC	2 cut(s)	144, 196
BmrFI	CCNGG	1 cut(s)	581
BmrI	ACTGGG	1 cut(s)	142
BmsI	GCATC	1 cut(s)	343
BmuI	ACTGGG	1 cut(s)	142
BoxI	GACNNNNGTC	1 cut(s)	533
BpiI	GAAGAC	1 cut(s)	488
BsaAI	YACGTR	1 cut(s)	216
BsaBI	GATNNNNATC	1 cut(s)	266
BsaJI	CCNNGG	3 cut(s)	328, 462, 531
BsaWI	WCCGGW	4 cut(s)	176, 200, 620, 632
Bsc4I	CCNNNNNNNGG	3 cut(s)	153, 154, 537
Bse118I	RCCGGY	3 cut(s)	191, 272, 632
Bse1I	ACTGG	2 cut(s)	148, 323
Bse3DI	GCAATG	1 cut(s)	439
Bse8I	GATNNNNATC	1 cut(s)	266
BseAI	TCCGGA	1 cut(s)	200
BseBI	CCWGG	1 cut(s)	581
BseDI	CCNNGG	3 cut(s)	328, 462, 531
BseJI	GATNNNNATC	1 cut(s)	266
BseLI	CCNNNNNNNGG	3 cut(s)	153, 154, 537
BseMI	GCAATG	1 cut(s)	439
BseMII	CTCAG	1 cut(s)	177
BseNI	ACTGG	2 cut(s)	148, 323
BseRI	GAGGAG	1 cut(s)	187
BseXI	GCAGC	1 cut(s)	154
BsgI	GTGCAG	1 cut(s)	491
Bsh1236I	CGCG	1 cut(s)	21
BshTI	ACCGGT	1 cut(s)	632
BsiHKAI	GWGCWC	1 cut(s)	189
BsiHKCI	CYCGRG	1 cut(s)	182
BsiSI	CCGG	6 cut(s)	177, 192, 201, 273, 621, 633
BslI	CCNNNNNNNGG	3 cut(s)	153, 154, 537
BsmAI	GTCTC	3 cut(s)	449, 475, 543
BsoBI	CYCGRG	1 cut(s)	182
Bsp1286I	GDGCHC	1 cut(s)	189
Bsp13I	TCCGGA	1 cut(s)	200
Bsp1407I	TGTACA	2 cut(s)	118, 390
Bsp143I	GATC	2 cut(s)	105, 261
Bsp19I	CCATGG	1 cut(s)	328
Bsp68I	TCGCGA	1 cut(s)	21
BspACI	CCGC	3 cut(s)	250, 434, 649
BspCNI	CTCAG	1 cut(s)	176
BspEI	TCCGGA	1 cut(s)	200
BspFNI	CGCG	1 cut(s)	21
BspHI	TCATGA	1 cut(s)	258
BspLI	GGNNCC	2 cut(s)	144, 196
BsrDI	GCAATG	1 cut(s)	439
BsrFI	RCCGGY	3 cut(s)	191, 272, 632
BsrGI	TGTACA	2 cut(s)	118, 390
BsrI	ACTGG	2 cut(s)	148, 323
BssAI	RCCGGY	3 cut(s)	191, 272, 632
BssECI	CCNNGG	3 cut(s)	328, 462, 531
BssMI	GATC	2 cut(s)	105, 261
BssSI	CACGAG	1 cut(s)	230
BssT1I	CCWWGG	3 cut(s)	328, 462, 531
Bst2BI	CACGAG	1 cut(s)	230
Bst2UI	CCWGG	1 cut(s)	581
Bst4CI	ACNGT	1 cut(s)	487
BstAUI	TGTACA	2 cut(s)	118, 390
BstBAI	YACGTR	1 cut(s)	216
BstC8I	GCNNGC	1 cut(s)	254
BstDEI	CTNAG	1 cut(s)	163
BstDSI	CCRYGG	1 cut(s)	328
BstFNI	CGCG	1 cut(s)	21
BstKTI	GATC	2 cut(s)	108, 264
BstMAI	GTCTC	3 cut(s)	449, 475, 543
BstMBI	GATC	2 cut(s)	105, 261
BstMWI	GCNNNNNNNGC	1 cut(s)	450
BstNI	CCWGG	1 cut(s)	581
BstPAI	GACNNNNGTC	1 cut(s)	533
BstSCI	CCNGG	1 cut(s)	579
BstUI	CGCG	1 cut(s)	21
BstV1I	GCAGC	1 cut(s)	154
BstV2I	GAAGAC	1 cut(s)	488
BtgI	CCRYGG	1 cut(s)	328
BtgZI	GCGATG	2 cut(s)	2, 253
BtsIMutI	CAGTG	1 cut(s)	492
BtuMI	TCGCGA	1 cut(s)	21
Cac8I	GCNNGC	1 cut(s)	254
CciI	TCATGA	1 cut(s)	258
Cfr10I	RCCGGY	3 cut(s)	191, 272, 632
Cfr13I	GGNCC	1 cut(s)	528
CseI	GACGC	2 cut(s)	235, 433
CsiI	ACCWGGT	1 cut(s)	579
Csp6I	GTAC	4 cut(s)	119, 313, 322, 391
CspAI	ACCGGT	1 cut(s)	632
CviAII	CATG	3 cut(s)	223, 259, 329
CviQI	GTAC	4 cut(s)	119, 313, 322, 391
DdeI	CTNAG	1 cut(s)	163
DpnI	GATC	2 cut(s)	107, 263
DpnII	GATC	2 cut(s)	105, 261
DraIII	CACNNNGTG	1 cut(s)	55
Ecl136II	GAGCTC	1 cut(s)	187
Eco130I	CCWWGG	3 cut(s)	328, 462, 531
Eco24I	GRGCYC	1 cut(s)	189
Eco47I	GGWCC	1 cut(s)	528
Eco53kI	GAGCTC	1 cut(s)	187
Eco72I	CACGTG	1 cut(s)	216
Eco88I	CYCGRG	1 cut(s)	182
EcoICRI	GAGCTC	1 cut(s)	187
EcoRII	CCWGG	1 cut(s)	579
EcoT14I	CCWWGG	3 cut(s)	328, 462, 531
EcoT38I	GRGCYC	1 cut(s)	189
ErhI	CCWWGG	3 cut(s)	328, 462, 531
FaeI	CATG	3 cut(s)	226, 262, 332
FatI	CATG	3 cut(s)	222, 258, 328
FauI	CCCGC	1 cut(s)	427
FblI	GTMKAC	2 cut(s)	159, 447
Fnu4HI	GCNGC	2 cut(s)	168, 649
FriOI	GRGCYC	1 cut(s)	189
Fsp4HI	GCNGC	2 cut(s)	168, 649
GluI	GCNGC	2 cut(s)	168, 649
HapII	CCGG	6 cut(s)	177, 192, 201, 273, 621, 633
HgaI	GACGC	2 cut(s)	235, 433
Hin1II	CATG	3 cut(s)	226, 262, 332
HincII	GTYRAC	2 cut(s)	160, 448
HindII	GTYRAC	2 cut(s)	160, 448
HinfI	GANTC	5 cut(s)	23, 161, 180, 409, 610
HpaII	CCGG	6 cut(s)	177, 192, 201, 273, 621, 633
HphI	GGTGA	2 cut(s)	181, 605
Hpy166II	GTNNAC	3 cut(s)	160, 393, 448
Hpy188I	TCNGA	2 cut(s)	299, 428
Hpy188III	TCNNGA	5 cut(s)	20, 137, 201, 259, 413
Hpy8I	GTNNAC	3 cut(s)	160, 393, 448
Hpy99I	CGWCG	4 cut(s)	35, 367, 449, 452
HpyAV	CCTTC	1 cut(s)	387
HpyCH4III	ACNGT	1 cut(s)	487
HpyCH4IV	ACGT	2 cut(s)	215, 510
HpyCH4V	TGCA	1 cut(s)	508
HpyF10VI	GCNNNNNNNGC	1 cut(s)	450
HpyF3I	CTNAG	1 cut(s)	163
HpySE526I	ACGT	2 cut(s)	215, 510
Hsp92II	CATG	3 cut(s)	226, 262, 332
Kpn2I	TCCGGA	1 cut(s)	200
Kzo9I	GATC	2 cut(s)	105, 261
LmnI	GCTCC	2 cut(s)	200, 603
Lsp1109I	GCAGC	1 cut(s)	154
LweI	GCATC	1 cut(s)	343
MabI	ACCWGGT	1 cut(s)	579
MaeII	ACGT	2 cut(s)	215, 510
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	2 cut(s)	107, 263
MboI	GATC	2 cut(s)	105, 261
MboII	GAAGA	3 cut(s)	5, 376, 493
MfeI	CAATTG	1 cut(s)	114
MhlI	GDGCHC	1 cut(s)	189
MluCI	AATT	1 cut(s)	114
MlyI	GAGTC	4 cut(s)	17, 155, 174, 418
MmeI	TCCRAC	1 cut(s)	406
MnlI	CCTC	3 cut(s)	57, 133, 208
MroI	TCCGGA	1 cut(s)	200
MseI	TTAA	1 cut(s)	564
MspA1I	CMGCKG	1 cut(s)	167
MspI	CCGG	6 cut(s)	177, 192, 201, 273, 621, 633
MspR9I	CCNGG	1 cut(s)	581
MunI	CAATTG	1 cut(s)	114
MvaI	CCWGG	1 cut(s)	581
MvnI	CGCG	1 cut(s)	21
MwoI	GCNNNNNNNGC	1 cut(s)	450
NcoI	CCATGG	1 cut(s)	328
NdeII	GATC	2 cut(s)	105, 261
NlaIII	CATG	3 cut(s)	226, 262, 332
NlaIV	GGNNCC	2 cut(s)	144, 196
NmuCI	GTSAC	1 cut(s)	172
NruI	TCGCGA	1 cut(s)	21
PaeR7I	CTCGAG	1 cut(s)	182
PagI	TCATGA	1 cut(s)	258
PfeI	GAWTC	1 cut(s)	610
PflFI	GACNNNGTC	1 cut(s)	581
PflMI	CCANNNNNTGG	1 cut(s)	537
PinAI	ACCGGT	1 cut(s)	632
PkrI	GCNGC	2 cut(s)	169, 650
PleI	GAGTC	4 cut(s)	17, 155, 174, 417
PmaCI	CACGTG	1 cut(s)	216
PmlI	CACGTG	1 cut(s)	216
PpsI	GAGTC	4 cut(s)	17, 155, 174, 417
Ppu21I	YACGTR	1 cut(s)	216
PshAI	GACNNNNGTC	1 cut(s)	533
Psp124BI	GAGCTC	1 cut(s)	189
Psp6I	CCWGG	1 cut(s)	579
PspCI	CACGTG	1 cut(s)	216
PspGI	CCWGG	1 cut(s)	579
PspN4I	GGNNCC	2 cut(s)	144, 196
PspPI	GGNCC	1 cut(s)	528
PspXI	VCTCGAGB	1 cut(s)	182
PsyI	GACNNNGTC	1 cut(s)	581
PvuII	CAGCTG	1 cut(s)	167
RruI	TCGCGA	1 cut(s)	21
RsaI	GTAC	4 cut(s)	120, 314, 323, 392
RsaNI	GTAC	4 cut(s)	119, 313, 322, 391
SacI	GAGCTC	1 cut(s)	189
SalI	GTCGAC	2 cut(s)	158, 446
SaqAI	TTAA	1 cut(s)	564
SatI	GCNGC	2 cut(s)	168, 649
Sau3AI	GATC	2 cut(s)	105, 261
Sau96I	GGNCC	1 cut(s)	528
ScaI	AGTACT	1 cut(s)	314
SchI	GAGTC	4 cut(s)	17, 155, 174, 418
ScrFI	CCNGG	1 cut(s)	581
SduI	GDGCHC	1 cut(s)	189
SexAI	ACCWGGT	1 cut(s)	579
SfaNI	GCATC	1 cut(s)	343
Sfr274I	CTCGAG	1 cut(s)	182
SgrAI	CRCCGGYG	1 cut(s)	272
SgrDI	CGTCGACG	1 cut(s)	446
SinI	GGWCC	1 cut(s)	528
SlaI	CTCGAG	1 cut(s)	182
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse9I	AATT	1 cut(s)	114
SsiI	CCGC	3 cut(s)	250, 434, 649
SstI	GAGCTC	1 cut(s)	189
StyD4I	CCNGG	1 cut(s)	579
StyI	CCWWGG	3 cut(s)	328, 462, 531
TaaI	ACNGT	1 cut(s)	487
TaiI	ACGT	2 cut(s)	218, 513
TaqI	TCGA	6 cut(s)	108, 159, 183, 264, 447, 585
TasI	AATT	1 cut(s)	114
TatI	WGTACW	3 cut(s)	118, 312, 390
TauI	GCSGC	1 cut(s)	651
TfiI	GAWTC	1 cut(s)	610
Tru1I	TTAA	1 cut(s)	564
Tru9I	TTAA	1 cut(s)	564
TscAI	CASTG	1 cut(s)	492
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	1 cut(s)	167
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	2 cut(s)	5, 277
TspRI	CASTG	1 cut(s)	492
Tth111I	GACNNNGTC	1 cut(s)	581
Van91I	CCANNNNNTGG	1 cut(s)	537
VpaK11BI	GGWCC	1 cut(s)	528
XhoI	CTCGAG	1 cut(s)	182
XmiI	GTMKAC	2 cut(s)	159, 447
ZrmI	AGTACT	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.