Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0002155

Physical Location & Seq

Genomic Coordinates Forward (+)

32665101 .. 32667490

Gene Structure 2390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024164

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGCCGGTGAGGGCCAACGGCTTTGCCGATGATTGGAGGTTGCTACCGGACAGGTGTGTGATGGGTTGGTGGTGGAGGACGCGATGCGGCTGGGTTTTCTTACCCCTGTTTTGGGTGGCGGCAGCTGGGCTCCTCAGGATGTTTCACGAGGGATCTGGAGGCGGGATTGATGAGCTCTGGTACCAAATCTGGGTGGGTATGTCTGTGTTAGGCGGGGCGTGGCTGTGCAGAGGGATGTGCGTTGGGTTAGGCAGGGTGTGGCTGTGCAGGTGGTTTTTGGGAGGTGGTTCGATGGTGGAGGGTTGGGTGGTTGCAGCTATGTTGCTTCTCAGTTGTATTACAGAGTCCATTGATTCCGGCGCCAATCCCGCAGTGGGTGTTCTTGGTAGTTCGGCGGCGGTTCATCTTGGCAGGTCTATGAATTCCGGTGCGTGGGTTTCTTTTAATCGCAATCATCCTCCTCCCTACAAATTCAAAGACAACAAAGACCGTGAGAAGGACATACTTCTCATTAAATTCCTTACGGGAATACCCTTCGTCTTGTTTTTAAGCTTCGCCGTGTACCAAAAGTTCATGTTATACGAGATGAATCTTCAAAGACCGCAGTTTCAGATCGACTCCGCTTCGGTCTCCGGAGTGAGCGTCACCGGCTGCCAGTTAACTGCCACGTGGAACATCACCCTCCTCTCCGCAAACCCTAACCTGCACCTCGGCGTTGACTATCTGACCATCGACTTGTCCCTCTATCATGGAGACAAGAAAGACGTGCTCTATTGGGATGGGAGATCCAAGACGATAGTGAATAAGGACGTCTGCTATGGCTTGGCGAAGGAGATCTCAGAGGGAGCGGCTCGTAGTGGCAAAGTCAAATTCGGGCTGCGCATCAGGCTTTCTTTTATTATAGAACTAAGAATTGGGGCCTGCGAGTTCGCCATGATGTTAGCTTCTTCTGTAATCGGATCGAATTCGTGTTCCCTCCGAATAATAATCATGGCACTGGAATTTTCAAAGGTCACTCGCGGGAATGCCCAGATTCTTGCTCAACTTTGGGAGATTATTGTATGCATAGTTGGTCTGTCATATCAAGCGGTTGAAACTTATTTGGATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

371

Amino Acids

41.2

Weight (kDa)

8.59

Isoelectric Point (pI)

31.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002155)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g17371
rosa_chinensis	RchiOBHm_Chr3g0471371 RchiOBHm_Chr3g0471581
rosa_laevigata	RLG00000010740 RLG00000015053 RLG00000024155 RLG00000024164 RLG00000024165 RLG00000024167 RLG00000024171 RLG00000024183
rosa_multiflora	Rmu_sc0005634.1_g000007 Rmu_sc0006582.1_g000002 Rmu_sc0006582.1_g000017 Rmu_sc0010513.1_g000002
rosa_roxburghii	Rroxscaffold_6G00409790 Rroxscaffold_6G00409870 Rroxscaffold_6G00410010 Rroxscaffold_7G00161210
rosa_rugosa	Rorug03G0118400
rosa_samantha	Rh3AG168200 Rh3AG168600 Rh3AG168800 Rh3BG192600 Rh3BG193800 Rh3BG194100 Rh3BG194400 Rh3BG194600 Rh3CG182900 Rh3CG184700 Rh3CG184800 Rh3CG185000 Rh3CG185200 Rh3CG185300 Rh3DG180200 Rh3DG180400 Rh3DG180800 Rh3DG181000 Rh3DG181700 Rh3DG183000 Rh6AG466900 Rh6DG468700
rosa_wichuraiana	Rw3G015740 Rw6G040700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	258
AatII	GACGTC	1 cut(s)	813
Acc16I	TGCGCA	1 cut(s)	881
Acc36I	ACCTGC	3 cut(s)	258, 402, 711
Acc65I	GGTACC	1 cut(s)	180
AccB1I	GGYRCC	2 cut(s)	180, 359
AccBSI	CCGCTC	1 cut(s)	848
AccII	CGCG	2 cut(s)	82, 1020
AccIII	TCCGGA	1 cut(s)	632
AclWI	GGATC	3 cut(s)	160, 780, 967
AcsI	RAATTY	6 cut(s)	421, 470, 515, 869, 964, 1001
AcvI	CACGTG	1 cut(s)	669
AcyI	GRCGYC	2 cut(s)	360, 810
AfaI	GTAC	2 cut(s)	182, 563
AfiI	CCNNNNNNNGG	7 cut(s)	33, 111, 112, 190, 374, 432, 496
AgsI	TTSAA	4 cut(s)	475, 596, 1008, 1094
AjiI	CACGTC	1 cut(s)	766
AjuI	GAANNNNNNNTTGG	2 cut(s)	897, 929
AluBI	AGCT	5 cut(s)	125, 175, 317, 552, 944
AluI	AGCT	5 cut(s)	125, 175, 317, 552, 944
Alw21I	GWGCWC	2 cut(s)	177, 771
Alw26I	GTCTC	2 cut(s)	634, 747
AlwI	GGATC	3 cut(s)	160, 780, 967
Aor13HI	TCCGGA	1 cut(s)	632
AoxI	GGCC	2 cut(s)	12, 918
ApeKI	GCWGC	4 cut(s)	122, 314, 651, 877
ApoI	RAATTY	6 cut(s)	421, 470, 515, 869, 964, 1001
Asp718I	GGTACC	1 cut(s)	180
AspLEI	GCGC	2 cut(s)	362, 882
AspS9I	GGNCC	2 cut(s)	12, 918
AsuHPI	GGTGA	3 cut(s)	19, 637, 670
AxyI	CCTNAGG	1 cut(s)	134
BanI	GGYRCC	2 cut(s)	180, 359
BanII	GRGCYC	2 cut(s)	132, 177
BauI	CACGAG	1 cut(s)	146
BbrPI	CACGTG	1 cut(s)	669
Bbv12I	GWGCWC	2 cut(s)	177, 771
BbvI	GCAGC	4 cut(s)	134, 326, 638, 864
BccI	CCATC	4 cut(s)	55, 286, 737, 773
BceAI	ACGGC	2 cut(s)	34, 542
BcoDI	GTCTC	2 cut(s)	634, 747
BfoI	RGCGCY	1 cut(s)	363
BfuAI	ACCTGC	3 cut(s)	258, 402, 711
BglII	AGATCT	1 cut(s)	834
BisI	GCNGC	8 cut(s)	88, 120, 123, 315, 396, 652, 849, 878
BlsI	GCNGC	8 cut(s)	89, 121, 124, 316, 397, 653, 850, 879
BmgBI	CACGTC	1 cut(s)	766
BmgT120I	GGNCC	2 cut(s)	12, 918
BmiI	GGNNCC	4 cut(s)	131, 182, 361, 919
BmsI	GCATC	2 cut(s)	74, 891
BpmI	CTGGAG	1 cut(s)	177
BsaAI	YACGTR	1 cut(s)	669
BsaHI	GRCGYC	2 cut(s)	360, 810
BsaI	GGTCTC	1 cut(s)	634
BsaJI	CCNNGG	1 cut(s)	709
BsaWI	WCCGGW	3 cut(s)	46, 425, 632
BsaXI	ACNNNNNCTCC	2 cut(s)	627, 657
Bsc4I	CCNNNNNNNGG	7 cut(s)	33, 111, 112, 190, 374, 432, 496
Bse118I	RCCGGY	2 cut(s)	4, 647
Bse1I	ACTGG	2 cut(s)	655, 1002
Bse21I	CCTNAGG	1 cut(s)	134
BseAI	TCCGGA	1 cut(s)	632
BseDI	CCNNGG	1 cut(s)	709
BseGI	GGATG	4 cut(s)	144, 240, 454, 784
BseLI	CCNNNNNNNGG	7 cut(s)	33, 111, 112, 190, 374, 432, 496
BseMII	CTCAG	3 cut(s)	148, 343, 852
BseNI	ACTGG	2 cut(s)	655, 1002
BseRI	GAGGAG	3 cut(s)	122, 450, 674
BseXI	GCAGC	4 cut(s)	134, 326, 638, 864
BseYI	CCCAGC	2 cut(s)	90, 125
BsgI	GTGCAG	3 cut(s)	247, 286, 689
Bsh1236I	CGCG	2 cut(s)	82, 1020
BshFI	GGCC	2 cut(s)	14, 920
BshNI	GGYRCC	2 cut(s)	180, 359
BsiHKAI	GWGCWC	2 cut(s)	177, 771
BsiSI	CCGG	6 cut(s)	5, 47, 357, 426, 633, 648
BslFI	GGGAC	1 cut(s)	724
BslI	CCNNNNNNNGG	7 cut(s)	33, 111, 112, 190, 374, 432, 496
BsmAI	GTCTC	2 cut(s)	634, 747
BsmFI	GGGAC	1 cut(s)	724
BsmI	GAATGC	1 cut(s)	1030
BsnI	GGCC	2 cut(s)	14, 920
Bso31I	GGTCTC	1 cut(s)	634
Bsp1286I	GDGCHC	3 cut(s)	132, 177, 771
Bsp13I	TCCGGA	1 cut(s)	632
Bsp143I	GATC	5 cut(s)	152, 612, 785, 834, 959
BspANI	GGCC	2 cut(s)	14, 920
BspCNI	CTCAG	3 cut(s)	147, 342, 851
BspEI	TCCGGA	1 cut(s)	632
BspFNI	CGCG	2 cut(s)	82, 1020
BspLI	GGNNCC	4 cut(s)	131, 182, 361, 919
BspMI	ACCTGC	3 cut(s)	258, 402, 711
BspPI	GGATC	3 cut(s)	160, 780, 967
BspT107I	GGYRCC	2 cut(s)	180, 359
BspTNI	GGTCTC	1 cut(s)	634
BsrBI	CCGCTC	1 cut(s)	848
BsrFI	RCCGGY	2 cut(s)	4, 647
BsrI	ACTGG	2 cut(s)	655, 1002
BssAI	RCCGGY	2 cut(s)	4, 647
BssECI	CCNNGG	1 cut(s)	709
BssMI	GATC	5 cut(s)	152, 612, 785, 834, 959
BssNI	GRCGYC	2 cut(s)	360, 810
BssSI	CACGAG	1 cut(s)	146
Bst2BI	CACGAG	1 cut(s)	146
Bst4CI	ACNGT	1 cut(s)	491
BstACI	GRCGYC	2 cut(s)	360, 810
BstBAI	YACGTR	1 cut(s)	669
BstC8I	GCNNGC	1 cut(s)	922
BstDEI	CTNAG	4 cut(s)	134, 329, 838, 908
BstF5I	GGATG	4 cut(s)	144, 240, 454, 784
BstFNI	CGCG	2 cut(s)	82, 1020
BstH2I	RGCGCY	1 cut(s)	363
BstHHI	GCGC	2 cut(s)	362, 882
BstKTI	GATC	5 cut(s)	155, 615, 788, 837, 962
BstMAI	GTCTC	2 cut(s)	634, 747
BstMBI	GATC	5 cut(s)	152, 612, 785, 834, 959
BstMWI	GCNNNNNNNGC	3 cut(s)	368, 648, 886
BstUI	CGCG	2 cut(s)	82, 1020
BstV1I	GCAGC	4 cut(s)	134, 326, 638, 864
BstX2I	RGATCY	3 cut(s)	152, 785, 834
BstYI	RGATCY	3 cut(s)	152, 785, 834
Bsu36I	CCTNAGG	1 cut(s)	134
BsuRI	GGCC	2 cut(s)	14, 920
BtgZI	GCGATG	1 cut(s)	97
BtrI	CACGTC	1 cut(s)	766
BtsCI	GGATG	4 cut(s)	144, 240, 454, 784
BtsI	GCAGTG	1 cut(s)	378
BtsIMutI	CAGTG	2 cut(s)	378, 995
BveI	ACCTGC	3 cut(s)	258, 402, 711
Cac8I	GCNNGC	1 cut(s)	922
CfoI	GCGC	2 cut(s)	362, 882
Cfr10I	RCCGGY	2 cut(s)	4, 647
Cfr13I	GGNCC	2 cut(s)	12, 918
CseI	GACGC	2 cut(s)	88, 631
Csp6I	GTAC	2 cut(s)	181, 562
CviAII	CATG	4 cut(s)	574, 749, 934, 991
CviQI	GTAC	2 cut(s)	181, 562
DdeI	CTNAG	4 cut(s)	134, 329, 838, 908
DinI	GGCGCC	1 cut(s)	361
DpnI	GATC	5 cut(s)	154, 614, 787, 836, 961
DpnII	GATC	5 cut(s)	152, 612, 785, 834, 959
Ecl136II	GAGCTC	1 cut(s)	175
Eco24I	GRGCYC	2 cut(s)	132, 177
Eco31I	GGTCTC	1 cut(s)	634
Eco53kI	GAGCTC	1 cut(s)	175
Eco72I	CACGTG	1 cut(s)	669
Eco81I	CCTNAGG	1 cut(s)	134
EcoICRI	GAGCTC	1 cut(s)	175
EcoO109I	RGGNCCY	1 cut(s)	918
EcoRI	GAATTC	2 cut(s)	421, 964
EcoT22I	ATGCAT	1 cut(s)	1067
EcoT38I	GRGCYC	2 cut(s)	132, 177
EgeI	GGCGCC	1 cut(s)	361
EheI	GGCGCC	1 cut(s)	361
FaeI	CATG	4 cut(s)	577, 752, 937, 994
FaqI	GGGAC	1 cut(s)	724
FatI	CATG	4 cut(s)	573, 748, 933, 990
FauI	CCCGC	4 cut(s)	155, 206, 376, 1013
Fnu4HI	GCNGC	8 cut(s)	88, 120, 123, 315, 396, 652, 849, 878
FokI	GGATG	4 cut(s)	151, 247, 441, 791
FriOI	GRGCYC	2 cut(s)	132, 177
Fsp4HI	GCNGC	8 cut(s)	88, 120, 123, 315, 396, 652, 849, 878
FspI	TGCGCA	1 cut(s)	881
GlaI	GCGC	2 cut(s)	361, 881
GluI	GCNGC	8 cut(s)	88, 120, 123, 315, 396, 652, 849, 878
GsaI	CCCAGC	2 cut(s)	94, 129
GsuI	CTGGAG	1 cut(s)	177
HaeII	RGCGCY	1 cut(s)	363
HaeIII	GGCC	2 cut(s)	14, 920
HapII	CCGG	6 cut(s)	5, 47, 357, 426, 633, 648
HgaI	GACGC	2 cut(s)	88, 631
HhaI	GCGC	2 cut(s)	362, 882
Hin1I	GRCGYC	2 cut(s)	360, 810
Hin1II	CATG	4 cut(s)	577, 752, 937, 994
Hin6I	GCGC	2 cut(s)	360, 880
HinP1I	GCGC	2 cut(s)	360, 880
HincII	GTYRAC	2 cut(s)	660, 718
HindII	GTYRAC	2 cut(s)	660, 718
HindIII	AAGCTT	1 cut(s)	550
HinfI	GANTC	5 cut(s)	344, 353, 589, 617, 1033
HpaI	GTTAAC	1 cut(s)	660
HpaII	CCGG	6 cut(s)	5, 47, 357, 426, 633, 648
HphI	GGTGA	3 cut(s)	19, 637, 670
Hpy166II	GTNNAC	3 cut(s)	562, 660, 718
Hpy188I	TCNGA	5 cut(s)	612, 726, 841, 959, 980
Hpy188III	TCNNGA	4 cut(s)	136, 146, 156, 633
Hpy8I	GTNNAC	3 cut(s)	562, 660, 718
HpyAV	CCTTC	3 cut(s)	490, 544, 823
HpyCH4III	ACNGT	1 cut(s)	491
HpyCH4IV	ACGT	3 cut(s)	668, 765, 810
HpyCH4V	TGCA	5 cut(s)	228, 267, 314, 706, 1065
HpyF10VI	GCNNNNNNNGC	3 cut(s)	368, 648, 886
HpyF3I	CTNAG	4 cut(s)	134, 329, 838, 908
HpySE526I	ACGT	3 cut(s)	668, 765, 810
Hsp92I	GRCGYC	2 cut(s)	360, 810
Hsp92II	CATG	4 cut(s)	577, 752, 937, 994
HspAI	GCGC	2 cut(s)	360, 880
KasI	GGCGCC	1 cut(s)	359
Kpn2I	TCCGGA	1 cut(s)	632
KpnI	GGTACC	1 cut(s)	184
KspAI	GTTAAC	1 cut(s)	660
Kzo9I	GATC	5 cut(s)	152, 612, 785, 834, 959
LmnI	GCTCC	2 cut(s)	135, 845
Lsp1109I	GCAGC	4 cut(s)	134, 326, 638, 864
LweI	GCATC	2 cut(s)	74, 891
MaeII	ACGT	3 cut(s)	668, 765, 810
MaeIII	GTNAC	2 cut(s)	643, 1012
MalI	GATC	5 cut(s)	154, 614, 787, 836, 961
MbiI	CCGCTC	1 cut(s)	848
MboI	GATC	5 cut(s)	152, 612, 785, 834, 959
MboII	GAAGA	2 cut(s)	584, 939
MflI	RGATCY	3 cut(s)	152, 785, 834
MhlI	GDGCHC	3 cut(s)	132, 177, 771
MluCI	AATT	7 cut(s)	421, 470, 515, 869, 912, 964, 1001
Mly113I	GGCGCC	1 cut(s)	360
MlyI	GAGTC	2 cut(s)	353, 611
Mph1103I	ATGCAT	1 cut(s)	1067
MroI	TCCGGA	1 cut(s)	632
MseI	TTAA	5 cut(s)	444, 513, 548, 659, 1111
MspA1I	CMGCKG	1 cut(s)	125
MspI	CCGG	6 cut(s)	5, 47, 357, 426, 633, 648
Mva1269I	GAATGC	1 cut(s)	1030
MvnI	CGCG	2 cut(s)	82, 1020
MwoI	GCNNNNNNNGC	3 cut(s)	368, 648, 886
NarI	GGCGCC	1 cut(s)	360
NdeII	GATC	5 cut(s)	152, 612, 785, 834, 959
NlaIII	CATG	4 cut(s)	577, 752, 937, 994
NlaIV	GGNNCC	4 cut(s)	131, 182, 361, 919
NmeAIII	GCCGAG	1 cut(s)	690
NmuCI	GTSAC	2 cut(s)	643, 1012
NsbI	TGCGCA	1 cut(s)	881
NsiI	ATGCAT	1 cut(s)	1067
PaqCI	CACCTGC	1 cut(s)	258
PcsI	WCGNNNNNNNCGW	1 cut(s)	24
PctI	GAATGC	1 cut(s)	1030
PfeI	GAWTC	3 cut(s)	353, 589, 1033
PkrI	GCNGC	8 cut(s)	89, 121, 124, 316, 397, 653, 850, 879
PleI	GAGTC	2 cut(s)	352, 611
PluTI	GGCGCC	1 cut(s)	363
PmaCI	CACGTG	1 cut(s)	669
PmlI	CACGTG	1 cut(s)	669
PpsI	GAGTC	2 cut(s)	352, 611
Ppu21I	YACGTR	1 cut(s)	669
Psp124BI	GAGCTC	1 cut(s)	177
PspCI	CACGTG	1 cut(s)	669
PspFI	CCCAGC	2 cut(s)	90, 125
PspN4I	GGNNCC	4 cut(s)	131, 182, 361, 919
PspPI	GGNCC	2 cut(s)	12, 918
PsrI	GAACNNNNNNTAC	2 cut(s)	554, 586
PsuI	RGATCY	3 cut(s)	152, 785, 834
PvuII	CAGCTG	1 cut(s)	125
RsaI	GTAC	2 cut(s)	182, 563
RsaNI	GTAC	2 cut(s)	181, 562
SacI	GAGCTC	1 cut(s)	177
SaqAI	TTAA	5 cut(s)	444, 513, 548, 659, 1111
SatI	GCNGC	8 cut(s)	88, 120, 123, 315, 396, 652, 849, 878
Sau3AI	GATC	5 cut(s)	152, 612, 785, 834, 959
Sau96I	GGNCC	2 cut(s)	12, 918
SchI	GAGTC	2 cut(s)	353, 611
SduI	GDGCHC	3 cut(s)	132, 177, 771
SfaNI	GCATC	2 cut(s)	74, 891
SfoI	GGCGCC	1 cut(s)	361
Sse9I	AATT	7 cut(s)	421, 470, 515, 869, 912, 964, 1001
SspDI	GGCGCC	1 cut(s)	359
SstI	GAGCTC	1 cut(s)	177
TaaI	ACNGT	1 cut(s)	491
TaiI	ACGT	3 cut(s)	671, 768, 813
TaqI	TCGA	4 cut(s)	290, 615, 732, 962
TaqII	GACCGA	1 cut(s)	616
TasI	AATT	7 cut(s)	421, 470, 515, 869, 912, 964, 1001
TauI	GCSGC	4 cut(s)	90, 122, 398, 851
TfiI	GAWTC	3 cut(s)	353, 589, 1033
Tru1I	TTAA	5 cut(s)	444, 513, 548, 659, 1111
Tru9I	TTAA	5 cut(s)	444, 513, 548, 659, 1111
TscAI	CASTG	2 cut(s)	378, 1002
TseFI	GTSAC	2 cut(s)	643, 1012
TseI	GCWGC	4 cut(s)	122, 314, 651, 877
Tsp45I	GTSAC	2 cut(s)	643, 1012
TspDTI	ATGAA	4 cut(s)	392, 434, 562, 602
TspRI	CASTG	2 cut(s)	378, 1002
XapI	RAATTY	6 cut(s)	421, 470, 515, 869, 964, 1001
XcmI	CCANNNNNNNNNTGG	1 cut(s)	370
ZraI	GACGTC	1 cut(s)	811
Zsp2I	ATGCAT	1 cut(s)	1067

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.