FvH4_6g27870

F-box associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0004545
Physical Location & Seq
Reverse (-)
21443245 .. 21445190
1946 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g27870.t1

Sequence Viewer

Length: 651 bp
ATGACAGGAGTGATCTATTGGTTTTACCGTGAGCTTTCCTCGTCTTGCATAGATTCTTTTGAAATTGACAATGGAAGGTTCAAGTCAGTTCCAGTACCTCCTTACGAACTGAGAACAAGTGATAATCATGTAAGCATGGGATTTGTAGGTGATTCTCTTTCCGTGTGTGAAGTTGCTTTCCTTGACGACATTAATGTGTGGGTAATGATAGATACTGGTGGAGAGAAGACTTGGGTGAAAAAGTTTAGTATTTGTACCAGTAGTCATGAAAGGCAGTGGCCATTTGGCTTGTATAAACCAATGAAGTTATTACAGAATGGAGTTTTTCTGATGTTTCATTCAAGTAGCAGTGCCTTCATCTACTATCACCCAAAAGACCATACATACAAATACCTTAAGCTTCGCGGATCTCAATCAGATTGTGAAGCCGTTAGTCATGTTCCAACCTTCATTTCTCTCAAGAGCATTTTTCTTGGGGCCAAAACAGAAGTACTGAATATAAATTCAAGGTGTGCTGGGTACAGGTTGCGGGGAGAGGCTAGAAGTACTCTTTCTTTAGAGGAAGAAGAAATTCAGATTTGCTTTCCAAAGGAAGTAAATGATGAAATAACCTCGGTGGTGGTGTCAACAGGGTATAGAATGCAGCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

217

Amino Acids

24.71

Weight (kDa)

6.31

Isoelectric Point (pI)

36.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 2 - 151 1.2e-06 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 405
AciI CCGC 2 cut(s) 405, 529
AclWI GGATC 1 cut(s) 415
AcoI YGGCCR 1 cut(s) 278
AcsI RAATTY 2 cut(s) 502, 570
AfaI GTAC 5 cut(s) 96, 256, 492, 521, 547
AflII CTTAAG 1 cut(s) 395
AgsI TTSAA 4 cut(s) 62, 82, 342, 507
AjuI GAANNNNNNNTTGG 2 cut(s) 436, 468
AluBI AGCT 2 cut(s) 34, 400
AluI AGCT 2 cut(s) 34, 400
AlwI GGATC 1 cut(s) 415
AoxI GGCC 2 cut(s) 278, 477
ApeKI GCWGC 1 cut(s) 643
ApoI RAATTY 2 cut(s) 502, 570
AseI ATTAAT 1 cut(s) 192
Asp700I GAANNNNTTC 1 cut(s) 570
AspS9I GGNCC 1 cut(s) 477
AsuHPI GGTGA 3 cut(s) 161, 247, 359
BalI TGGCCA 1 cut(s) 280
BbsI GAAGAC 1 cut(s) 233
BceAI ACGGC 1 cut(s) 413
BfaI CTAG 1 cut(s) 540
BfrI CTTAAG 1 cut(s) 395
BisI GCNGC 1 cut(s) 644
BlsI GCNGC 1 cut(s) 645
BmcAI AGTACT 2 cut(s) 492, 547
BmgT120I GGNCC 1 cut(s) 477
BmiI GGNNCC 1 cut(s) 478
BpiI GAAGAC 1 cut(s) 233
BplI GAGNNNNNCTC 2 cut(s) 23, 55
BpuEI CTTGAG 1 cut(s) 443
BsaBI GATNNNNATC 1 cut(s) 412
BsaJI CCNNGG 1 cut(s) 612
Bse1I ACTGG 3 cut(s) 92, 220, 258
Bse8I GATNNNNATC 1 cut(s) 412
BseDI CCNNGG 1 cut(s) 612
BseJI GATNNNNATC 1 cut(s) 412
BseMII CTCAG 1 cut(s) 101
BseNI ACTGG 3 cut(s) 92, 220, 258
BseYI CCCAGC 1 cut(s) 515
Bsh1236I CGCG 1 cut(s) 405
BshFI GGCC 2 cut(s) 280, 479
BsmI GAATGC 1 cut(s) 645
BsnI GGCC 2 cut(s) 280, 479
Bsp143I GATC 2 cut(s) 12, 407
BspACI CCGC 2 cut(s) 405, 529
BspANI GGCC 2 cut(s) 280, 479
BspCNI CTCAG 1 cut(s) 102
BspFNI CGCG 1 cut(s) 405
BspHI TCATGA 1 cut(s) 265
BspLI GGNNCC 1 cut(s) 478
BspPI GGATC 1 cut(s) 415
BspTI CTTAAG 1 cut(s) 395
BsrI ACTGG 3 cut(s) 92, 220, 258
BssECI CCNNGG 1 cut(s) 612
BssMI GATC 2 cut(s) 12, 407
Bst4CI ACNGT 1 cut(s) 29
BstAFI CTTAAG 1 cut(s) 395
BstDEI CTNAG 1 cut(s) 110
BstFNI CGCG 1 cut(s) 405
BstKTI GATC 2 cut(s) 15, 410
BstMBI GATC 2 cut(s) 12, 407
BstUI CGCG 1 cut(s) 405
BstV2I GAAGAC 1 cut(s) 233
BstX2I RGATCY 1 cut(s) 407
BstYI RGATCY 1 cut(s) 407
BsuRI GGCC 2 cut(s) 280, 479
BtsI GCAGTG 2 cut(s) 281, 355
BtsIMutI CAGTG 2 cut(s) 281, 355
CciI TCATGA 1 cut(s) 265
Cfr13I GGNCC 1 cut(s) 477
Csp6I GTAC 5 cut(s) 95, 255, 491, 520, 546
CviAII CATG 4 cut(s) 128, 136, 266, 437
CviJI RGCY 7 cut(s) 34, 280, 288, 400, 428, 479, 539
CviKI_1 RGCY 7 cut(s) 34, 280, 288, 400, 428, 479, 539
CviQI GTAC 5 cut(s) 95, 255, 491, 520, 546
DdeI CTNAG 1 cut(s) 110
DpnI GATC 2 cut(s) 14, 409
DpnII GATC 2 cut(s) 12, 407
EaeI YGGCCR 1 cut(s) 278
FaeI CATG 4 cut(s) 131, 139, 269, 440
FatI CATG 4 cut(s) 127, 135, 265, 436
FauI CCCGC 1 cut(s) 522
Fnu4HI GCNGC 1 cut(s) 644
Fsp4HI GCNGC 1 cut(s) 644
FspBI CTAG 1 cut(s) 540
GluI GCNGC 1 cut(s) 644
GsaI CCCAGC 1 cut(s) 519
HaeIII GGCC 2 cut(s) 280, 479
Hin1II CATG 4 cut(s) 131, 139, 269, 440
HincII GTYRAC 1 cut(s) 627
HindII GTYRAC 1 cut(s) 627
HindIII AAGCTT 1 cut(s) 398
HinfI GANTC 2 cut(s) 53, 152
HphI GGTGA 3 cut(s) 161, 247, 359
Hpy166II GTNNAC 1 cut(s) 627
Hpy188I TCNGA 3 cut(s) 330, 418, 576
Hpy188III TCNNGA 2 cut(s) 266, 460
Hpy8I GTNNAC 1 cut(s) 627
HpyAV CCTTC 3 cut(s) 69, 364, 457
HpyCH4III ACNGT 1 cut(s) 29
HpyCH4V TGCA 2 cut(s) 48, 643
HpyF3I CTNAG 1 cut(s) 110
Hsp92II CATG 4 cut(s) 131, 139, 269, 440
Kzo9I GATC 2 cut(s) 12, 407
LpnPI CCDG 6 cut(s) 105, 201, 271, 501, 508, 615
MaeI CTAG 1 cut(s) 540
MalI GATC 2 cut(s) 14, 409
MboI GATC 2 cut(s) 12, 407
MboII GAAGA 3 cut(s) 238, 575, 578
MflI RGATCY 1 cut(s) 407
MlsI TGGCCA 1 cut(s) 280
MluCI AATT 3 cut(s) 63, 502, 570
MluNI TGGCCA 1 cut(s) 280
MmeI TCCRAC 1 cut(s) 467
MnlI CCTC 5 cut(s) 49, 108, 529, 553, 622
Mox20I TGGCCA 1 cut(s) 280
MroXI GAANNNNTTC 1 cut(s) 570
MscI TGGCCA 1 cut(s) 280
MseI TTAA 3 cut(s) 192, 396, 649
MslI CAYNNNNRTG 1 cut(s) 194
Msp20I TGGCCA 1 cut(s) 280
MspCI CTTAAG 1 cut(s) 395
Mva1269I GAATGC 1 cut(s) 645
MvnI CGCG 1 cut(s) 405
NdeII GATC 2 cut(s) 12, 407
NlaIII CATG 4 cut(s) 131, 139, 269, 440
NlaIV GGNNCC 1 cut(s) 478
PagI TCATGA 1 cut(s) 265
PctI GAATGC 1 cut(s) 645
PdmI GAANNNNTTC 1 cut(s) 570
PfeI GAWTC 2 cut(s) 53, 152
PkrI GCNGC 1 cut(s) 645
PshBI ATTAAT 1 cut(s) 192
PspFI CCCAGC 1 cut(s) 515
PspN4I GGNNCC 1 cut(s) 478
PspPI GGNCC 1 cut(s) 477
PsuI RGATCY 1 cut(s) 407
RsaI GTAC 5 cut(s) 96, 256, 492, 521, 547
RsaNI GTAC 5 cut(s) 95, 255, 491, 520, 546
RseI CAYNNNNRTG 1 cut(s) 194
SaqAI TTAA 3 cut(s) 192, 396, 649
SatI GCNGC 1 cut(s) 644
Sau3AI GATC 2 cut(s) 12, 407
Sau96I GGNCC 1 cut(s) 477
ScaI AGTACT 2 cut(s) 492, 547
SmiMI CAYNNNNRTG 1 cut(s) 194
SmlI CTYRAG 2 cut(s) 395, 458
SmoI CTYRAG 2 cut(s) 395, 458
Sse9I AATT 3 cut(s) 63, 502, 570
SsiI CCGC 2 cut(s) 405, 529
SspMI CTAG 1 cut(s) 540
TaaI ACNGT 1 cut(s) 29
TasI AATT 3 cut(s) 63, 502, 570
TatI WGTACW 2 cut(s) 490, 545
TfiI GAWTC 2 cut(s) 53, 152
Tru1I TTAA 3 cut(s) 192, 396, 649
Tru9I TTAA 3 cut(s) 192, 396, 649
TscAI CASTG 2 cut(s) 281, 355
TseI GCWGC 1 cut(s) 643
TspDTI ATGAA 6 cut(s) 282, 317, 326, 346, 439, 618
TspGWI ACGGA 1 cut(s) 151
TspRI CASTG 2 cut(s) 281, 355
Vha464I CTTAAG 1 cut(s) 395
VspI ATTAAT 1 cut(s) 192
XapI RAATTY 2 cut(s) 502, 570
XmnI GAANNNNTTC 1 cut(s) 570
XspI CTAG 1 cut(s) 540
ZrmI AGTACT 2 cut(s) 492, 547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.