Rh2CG335100

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0004545
Physical Location & Seq
Reverse (-)
44123581 .. 44134318
10738 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG335100.1

Sequence Viewer

Length: 675 bp
ATGACCGAGACCAATAACTTCATTCTATGGAACCCCTCAATTCGAAAGTCCATCACTATTCCTAAACGTCATATCCCACACTCTGAAGACTATACAGTTTATGGGTTCGGGTTTGGGTTTGATGCTAAGAGAGATGATTACAAGATAGTGCAGCTGGTGTATGAAGGTCACAACAGAGGTAGCCCTGAAGTTGAGCTCTACTCACTCAATTCAAGGTCTTGGAAAAGCATTACTGCAGCTTATCCCAAGCATGAGGTTGCTCGAAGAATCAAGGCACTGCAAAGAAGAGCTGCATCAAGATTTTGTCAAATGAGCAAGTACAAGATGGTGGATTCCTGTAATGGGTTCCTTTGCTTGTTTGAACCGATCTTCGGTGATCCTCTTGTTGTGTGCAATCCAATAACCGGAGAGTTTATACTCCTACCCGAAGCTTCTAAGCATACTAATAATGAAAAAGTATCTGTTGTGTGTGGATTTGGTTTTAGTCTGAAGACTAACCAATATAAGGTAATAAGAATTTTTGAAGAAGGAACACCTAGTCTGAGCAGAATAGCTGAGGTACACCATCTTGGGACTGGTTCATGGGAATGTGTTGGTAGTATTCCCTTCTCAAATGCTTCGTTCTCAAGATATAAGGCAGAGTTCACCACCTATAAGGCAGGTTTTGTTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

224

Amino Acids

25.41

Weight (kDa)

9.08

Isoelectric Point (pI)

39.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 3 - 81 6.4e-10 F-box associated beta propeller domain
FBA_3 PF08268 5 - 86 3e-08 F-box associated beta propeller domain
FBA_1 PF07734 100 - 200 8.3e-09 F-box associated beta propeller domain
FBA_3 PF08268 103 - 198 3.3e-09 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 650
AclWI GGATC 1 cut(s) 371
AcsI RAATTY 1 cut(s) 516
AcuI CTGAAG 3 cut(s) 105, 207, 509
AfaI GTAC 2 cut(s) 320, 561
AfiI CCNNNNNNNGG 4 cut(s) 342, 371, 404, 505
AgsI TTSAA 3 cut(s) 213, 362, 524
AluBI AGCT 6 cut(s) 154, 196, 239, 290, 431, 554
AluI AGCT 6 cut(s) 154, 196, 239, 290, 431, 554
Alw21I GWGCWC 1 cut(s) 198
Alw26I GTCTC 1 cut(s) 2
AlwI GGATC 1 cut(s) 371
ApeKI GCWGC 3 cut(s) 151, 236, 290
ApoI RAATTY 1 cut(s) 516
AsuHPI GGTGA 2 cut(s) 386, 637
AsuII TTCGAA 1 cut(s) 43
BanII GRGCYC 1 cut(s) 198
BbsI GAAGAC 2 cut(s) 93, 497
Bbv12I GWGCWC 1 cut(s) 198
BbvCI CCTCAGC 1 cut(s) 555
BbvI GCAGC 3 cut(s) 163, 248, 277
BccI CCATC 3 cut(s) 59, 319, 573
BcoDI GTCTC 1 cut(s) 2
BfaI CTAG 1 cut(s) 537
BfmI CTRYAG 1 cut(s) 234
BfuAI ACCTGC 1 cut(s) 650
BisI GCNGC 3 cut(s) 152, 237, 291
BlsI GCNGC 3 cut(s) 153, 238, 292
BmiI GGNNCC 2 cut(s) 32, 347
BmsI GCATC 2 cut(s) 112, 302
BpiI GAAGAC 2 cut(s) 93, 497
BplI GAGNNNNNCTC 2 cut(s) 185, 217
Bpu10I CCTNAGC 1 cut(s) 555
Bpu14I TTCGAA 1 cut(s) 43
BpuEI CTTGAG 1 cut(s) 610
BsaI GGTCTC 1 cut(s) 2
BsaWI WCCGGW 1 cut(s) 404
Bsc4I CCNNNNNNNGG 4 cut(s) 342, 371, 404, 505
Bse1I ACTGG 1 cut(s) 580
BseLI CCNNNNNNNGG 4 cut(s) 342, 371, 404, 505
BseMII CTCAG 2 cut(s) 533, 546
BseNI ACTGG 1 cut(s) 580
BseXI GCAGC 3 cut(s) 163, 248, 277
BsgI GTGCAG 1 cut(s) 170
BsiHKAI GWGCWC 1 cut(s) 198
BsiSI CCGG 1 cut(s) 405
BslFI GGGAC 1 cut(s) 586
BslI CCNNNNNNNGG 4 cut(s) 342, 371, 404, 505
BsmAI GTCTC 1 cut(s) 2
BsmFI GGGAC 1 cut(s) 586
Bso31I GGTCTC 1 cut(s) 2
Bsp119I TTCGAA 1 cut(s) 43
Bsp1286I GDGCHC 1 cut(s) 198
Bsp143I GATC 2 cut(s) 366, 376
BspCNI CTCAG 2 cut(s) 534, 547
BspLI GGNNCC 2 cut(s) 32, 347
BspMAI CTGCAG 1 cut(s) 238
BspMI ACCTGC 1 cut(s) 650
BspPI GGATC 1 cut(s) 371
BspQI GCTCTTC 1 cut(s) 280
BspT104I TTCGAA 1 cut(s) 43
BspTNI GGTCTC 1 cut(s) 2
BsrI ACTGG 1 cut(s) 580
BssMI GATC 2 cut(s) 366, 376
Bst4CI ACNGT 1 cut(s) 97
Bst6I CTCTTC 1 cut(s) 280
BstBI TTCGAA 1 cut(s) 43
BstDEI CTNAG 4 cut(s) 126, 435, 542, 555
BstKTI GATC 2 cut(s) 369, 379
BstMAI GTCTC 1 cut(s) 2
BstMBI GATC 2 cut(s) 366, 376
BstSFI CTRYAG 1 cut(s) 234
BstV1I GCAGC 3 cut(s) 163, 248, 277
BstV2I GAAGAC 2 cut(s) 93, 497
BtsI GCAGTG 1 cut(s) 275
BtsIMutI CAGTG 1 cut(s) 275
BveI ACCTGC 1 cut(s) 650
Csp6I GTAC 2 cut(s) 319, 560
CviAII CATG 2 cut(s) 251, 582
CviJI RGCY 7 cut(s) 154, 183, 196, 239, 290, 431, 554
CviKI_1 RGCY 7 cut(s) 154, 183, 196, 239, 290, 431, 554
CviQI GTAC 2 cut(s) 319, 560
DdeI CTNAG 4 cut(s) 126, 435, 542, 555
DpnI GATC 2 cut(s) 368, 378
DpnII GATC 2 cut(s) 366, 376
Eam1104I CTCTTC 1 cut(s) 280
EarI CTCTTC 1 cut(s) 280
Ecl136II GAGCTC 1 cut(s) 196
Eco24I GRGCYC 1 cut(s) 198
Eco31I GGTCTC 1 cut(s) 2
Eco53kI GAGCTC 1 cut(s) 196
Eco57I CTGAAG 3 cut(s) 105, 207, 509
EcoICRI GAGCTC 1 cut(s) 196
EcoT38I GRGCYC 1 cut(s) 198
FaeI CATG 2 cut(s) 254, 585
FaqI GGGAC 1 cut(s) 586
FatI CATG 2 cut(s) 250, 581
Fnu4HI GCNGC 3 cut(s) 152, 237, 291
FriOI GRGCYC 1 cut(s) 198
Fsp4HI GCNGC 3 cut(s) 152, 237, 291
FspBI CTAG 1 cut(s) 537
GluI GCNGC 3 cut(s) 152, 237, 291
HapII CCGG 1 cut(s) 405
Hin1II CATG 2 cut(s) 254, 585
HindIII AAGCTT 1 cut(s) 429
HinfI GANTC 2 cut(s) 267, 332
HpaII CCGG 1 cut(s) 405
HphI GGTGA 2 cut(s) 386, 637
Hpy166II GTNNAC 2 cut(s) 562, 645
Hpy188I TCNGA 3 cut(s) 85, 489, 543
Hpy188III TCNNGA 2 cut(s) 297, 627
Hpy8I GTNNAC 2 cut(s) 562, 645
HpyAV CCTTC 3 cut(s) 158, 521, 616
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4IV ACGT 1 cut(s) 67
HpyCH4V TGCA 5 cut(s) 151, 236, 280, 293, 393
HpyF3I CTNAG 4 cut(s) 126, 435, 542, 555
HpySE526I ACGT 1 cut(s) 67
Hsp92II CATG 2 cut(s) 254, 585
Kzo9I GATC 2 cut(s) 366, 376
LguI GCTCTTC 1 cut(s) 280
LpnPI CCDG 6 cut(s) 140, 198, 349, 418, 561, 645
Lsp1109I GCAGC 3 cut(s) 163, 248, 277
LweI GCATC 2 cut(s) 112, 302
MaeI CTAG 1 cut(s) 537
MaeII ACGT 1 cut(s) 67
MaeIII GTNAC 1 cut(s) 167
MalI GATC 2 cut(s) 368, 378
MboI GATC 2 cut(s) 366, 376
MboII GAAGA 6 cut(s) 98, 276, 297, 361, 502, 536
MhlI GDGCHC 1 cut(s) 198
MluCI AATT 3 cut(s) 39, 208, 516
MmeI TCCRAC 1 cut(s) 649
MnlI CCTC 5 cut(s) 46, 170, 247, 390, 550
MslI CAYNNNNRTG 1 cut(s) 586
MspA1I CMGCKG 1 cut(s) 154
MspI CCGG 1 cut(s) 405
NdeII GATC 2 cut(s) 366, 376
NlaIII CATG 2 cut(s) 254, 585
NlaIV GGNNCC 2 cut(s) 32, 347
NmuCI GTSAC 1 cut(s) 167
NspV TTCGAA 1 cut(s) 43
PciSI GCTCTTC 1 cut(s) 280
PfeI GAWTC 2 cut(s) 267, 332
PkrI GCNGC 3 cut(s) 153, 238, 292
Psp124BI GAGCTC 1 cut(s) 198
PspN4I GGNNCC 2 cut(s) 32, 347
PstI CTGCAG 1 cut(s) 238
PvuII CAGCTG 1 cut(s) 154
RsaI GTAC 2 cut(s) 320, 561
RsaNI GTAC 2 cut(s) 319, 560
RseI CAYNNNNRTG 1 cut(s) 586
SacI GAGCTC 1 cut(s) 198
SapI GCTCTTC 1 cut(s) 280
SatI GCNGC 3 cut(s) 152, 237, 291
Sau3AI GATC 2 cut(s) 366, 376
SduI GDGCHC 1 cut(s) 198
SfaNI GCATC 2 cut(s) 112, 302
SfcI CTRYAG 1 cut(s) 234
SfuI TTCGAA 1 cut(s) 43
SmiMI CAYNNNNRTG 1 cut(s) 586
SmlI CTYRAG 1 cut(s) 625
SmoI CTYRAG 1 cut(s) 625
Sse9I AATT 3 cut(s) 39, 208, 516
SspMI CTAG 1 cut(s) 537
SstI GAGCTC 1 cut(s) 198
TaaI ACNGT 1 cut(s) 97
TaiI ACGT 1 cut(s) 70
TaqI TCGA 2 cut(s) 43, 262
TaqII GACCGA 1 cut(s) 20
TasI AATT 3 cut(s) 39, 208, 516
TatI WGTACW 1 cut(s) 318
TfiI GAWTC 2 cut(s) 267, 332
TscAI CASTG 1 cut(s) 282
TseFI GTSAC 1 cut(s) 167
TseI GCWGC 3 cut(s) 151, 236, 290
Tsp45I GTSAC 1 cut(s) 167
TspDTI ATGAA 4 cut(s) 10, 177, 465, 570
TspRI CASTG 1 cut(s) 282
XapI RAATTY 1 cut(s) 516
XcmI CCANNNNNNNNNTGG 1 cut(s) 572
XspI CTAG 1 cut(s) 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.