F-box associated
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g27870 FvH4_6g28330 |
| malus_domestica | MD01G1181800.v1.1 MD17G1263300.v1.1 |
| prunus_persica | Prupe.3G111700_v2.0.a1 Prupe.3G112000_v2.0.a1 Prupe.3G112200_v2.0.a1 Prupe.3G112200_v2.0.a1 Prupe.3G112400_v2.0.a1 Prupe.3G112400_v2.0.a1 |
| pyrus_communis | pycom17g26350 |
| rosa_chinensis | RchiOBHm_Chr2g0131131 |
| rosa_laevigata | RLG00000019173 RLG00000019176 |
| rosa_multiflora | Rmu_sc0003629.1_g000070 |
| rosa_roxburghii | Rroxscaffold_2G00113130 |
| rosa_rugosa | Rorug02G0327300 |
| rosa_samantha | Rh2AG347600 Rh2AG348000 Rh2BG355200 Rh2BG355300 Rh2CG333800 Rh2CG333900 Rh2CG334000 Rh2CG335100 Rh2DG373000 Rh2DG373300 Rh2DG374100 |
| rosa_wichuraiana | Rw2G028230 Rw2G028250 Rw2G028280 Rw2G028310 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 83, 605 |
| Acc16I | TGCGCA | 1 cut(s) | 398 |
| Acc36I | ACCTGC | 2 cut(s) | 752, 1325 |
| AccI | GTMKAC | 1 cut(s) | 20 |
| AccII | CGCG | 1 cut(s) | 264 |
| AciI | CCGC | 3 cut(s) | 258, 740, 923 |
| AclWI | GGATC | 4 cut(s) | 121, 545, 1111, 1405 |
| AcoI | YGGCCR | 1 cut(s) | 1094 |
| AcsI | RAATTY | 4 cut(s) | 197, 599, 1013, 1321 |
| AcuI | CTGAAG | 2 cut(s) | 315, 1298 |
| AfaI | GTAC | 2 cut(s) | 509, 1311 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 42, 243, 250, 593, 929 |
| AflII | CTTAAG | 1 cut(s) | 1214 |
| AflIII | ACRYGT | 1 cut(s) | 262 |
| AgsI | TTSAA | 7 cut(s) | 65, 319, 648, 1111, 1231, 1326, 1342 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 723 |
| AjnI | CCWGG | 1 cut(s) | 134 |
| AleI | CACNNNNGTG | 1 cut(s) | 824 |
| AluBI | AGCT | 8 cut(s) | 208, 303, 800, 808, 1219, 1266, 1345, 1364 |
| AluI | AGCT | 8 cut(s) | 208, 303, 800, 808, 1219, 1266, 1345, 1364 |
| Alw21I | GWGCWC | 2 cut(s) | 790, 1042 |
| Alw26I | GTCTC | 1 cut(s) | 1349 |
| Alw44I | GTGCAC | 1 cut(s) | 1038 |
| AlwI | GGATC | 4 cut(s) | 121, 545, 1111, 1405 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 194 |
| AoxI | GGCC | 2 cut(s) | 245, 1094 |
| ApaLI | GTGCAC | 1 cut(s) | 1038 |
| ApeKI | GCWGC | 2 cut(s) | 208, 1345 |
| ApoI | RAATTY | 4 cut(s) | 197, 599, 1013, 1321 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 182, 214 |
| AspLEI | GCGC | 1 cut(s) | 399 |
| AspS9I | GGNCC | 5 cut(s) | 74, 241, 246, 254, 717 |
| AsuHPI | GGTGA | 4 cut(s) | 529, 706, 808, 1175 |
| AsuNHI | GCTAGC | 1 cut(s) | 808 |
| AvaII | GGWCC | 4 cut(s) | 74, 241, 254, 717 |
| BaeGI | GKGCMC | 1 cut(s) | 1042 |
| BauI | CACGAG | 1 cut(s) | 523 |
| Bbv12I | GWGCWC | 2 cut(s) | 790, 1042 |
| BbvI | GCAGC | 2 cut(s) | 195, 1332 |
| BccI | CCATC | 1 cut(s) | 925 |
| BceAI | ACGGC | 2 cut(s) | 547, 1081 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 249, 283 |
| BciT130I | CCWGG | 1 cut(s) | 136 |
| BciVI | GTATCC | 1 cut(s) | 886 |
| BclI | TGATCA | 1 cut(s) | 499 |
| BcoDI | GTCTC | 1 cut(s) | 1349 |
| BfaI | CTAG | 3 cut(s) | 801, 809, 1349 |
| BfrI | CTTAAG | 1 cut(s) | 1214 |
| BfuAI | ACCTGC | 2 cut(s) | 752, 1325 |
| BfuI | GTATCC | 1 cut(s) | 886 |
| BglII | AGATCT | 1 cut(s) | 88 |
| BisI | GCNGC | 2 cut(s) | 209, 1346 |
| BlpI | GCTNAGC | 2 cut(s) | 204, 405 |
| BlsI | GCNGC | 2 cut(s) | 210, 1347 |
| BmcAI | AGTACT | 1 cut(s) | 1311 |
| Bme1390I | CCNGG | 1 cut(s) | 136 |
| Bme18I | GGWCC | 4 cut(s) | 74, 241, 254, 717 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 723 |
| BmgT120I | GGNCC | 5 cut(s) | 74, 241, 246, 254, 717 |
| BmiI | GGNNCC | 6 cut(s) | 75, 255, 256, 310, 718, 719 |
| BmrFI | CCNGG | 1 cut(s) | 136 |
| BmsI | GCATC | 3 cut(s) | 432, 489, 1072 |
| BmtI | GCTAGC | 1 cut(s) | 812 |
| BpmI | CTGGAG | 1 cut(s) | 1394 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 204, 405 |
| Bsa29I | ATCGAT | 1 cut(s) | 651 |
| BsaBI | GATNNNNATC | 1 cut(s) | 647 |
| BsaI | GGTCTC | 1 cut(s) | 1349 |
| BsaJI | CCNNGG | 4 cut(s) | 237, 249, 424, 674 |
| BsaWI | WCCGGW | 1 cut(s) | 593 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 42, 243, 250, 593, 929 |
| Bse3DI | GCAATG | 2 cut(s) | 392, 406 |
| Bse8I | GATNNNNATC | 1 cut(s) | 647 |
| BseBI | CCWGG | 1 cut(s) | 136 |
| BseCI | ATCGAT | 1 cut(s) | 651 |
| BseDI | CCNNGG | 4 cut(s) | 237, 249, 424, 674 |
| BseGI | GGATG | 3 cut(s) | 58, 917, 1306 |
| BseJI | GATNNNNATC | 1 cut(s) | 647 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 42, 243, 250, 593, 929 |
| BseMI | GCAATG | 2 cut(s) | 392, 406 |
| BseMII | CTCAG | 3 cut(s) | 218, 396, 621 |
| BseSI | GKGCMC | 1 cut(s) | 1042 |
| BseXI | GCAGC | 2 cut(s) | 195, 1332 |
| BsgI | GTGCAG | 1 cut(s) | 1353 |
| Bsh1236I | CGCG | 1 cut(s) | 264 |
| BshFI | GGCC | 2 cut(s) | 247, 1096 |
| BshVI | ATCGAT | 1 cut(s) | 651 |
| BsiHKAI | GWGCWC | 2 cut(s) | 790, 1042 |
| BsiSI | CCGG | 2 cut(s) | 244, 594 |
| BslFI | GGGAC | 3 cut(s) | 240, 711, 730 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 42, 243, 250, 593, 929 |
| BsmAI | GTCTC | 1 cut(s) | 1349 |
| BsmFI | GGGAC | 3 cut(s) | 240, 711, 730 |
| BsmI | GAATGC | 2 cut(s) | 141, 812 |
| BsnI | GGCC | 2 cut(s) | 247, 1096 |
| Bso31I | GGTCTC | 1 cut(s) | 1349 |
| Bsp1286I | GDGCHC | 2 cut(s) | 790, 1042 |
| Bsp143I | GATC | 8 cut(s) | 88, 126, 353, 499, 550, 1000, 1103, 1397 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 204, 405 |
| Bsp19I | CCATGG | 1 cut(s) | 237 |
| BspACI | CCGC | 3 cut(s) | 258, 740, 923 |
| BspANI | GGCC | 2 cut(s) | 247, 1096 |
| BspCNI | CTCAG | 3 cut(s) | 217, 397, 622 |
| BspDI | ATCGAT | 1 cut(s) | 651 |
| BspFNI | CGCG | 1 cut(s) | 264 |
| BspLI | GGNNCC | 6 cut(s) | 75, 255, 256, 310, 718, 719 |
| BspMI | ACCTGC | 2 cut(s) | 752, 1325 |
| BspOI | GCTAGC | 1 cut(s) | 812 |
| BspPI | GGATC | 4 cut(s) | 121, 545, 1111, 1405 |
| BspTI | CTTAAG | 1 cut(s) | 1214 |
| BspTNI | GGTCTC | 1 cut(s) | 1349 |
| BsrDI | GCAATG | 2 cut(s) | 392, 406 |
| BssECI | CCNNGG | 4 cut(s) | 237, 249, 424, 674 |
| BssMI | GATC | 8 cut(s) | 88, 126, 353, 499, 550, 1000, 1103, 1397 |
| BssSI | CACGAG | 1 cut(s) | 523 |
| BssT1I | CCWWGG | 3 cut(s) | 237, 249, 674 |
| Bst2BI | CACGAG | 1 cut(s) | 523 |
| Bst2UI | CCWGG | 1 cut(s) | 136 |
| Bst4CI | ACNGT | 4 cut(s) | 341, 428, 1199, 1421 |
| BstAFI | CTTAAG | 1 cut(s) | 1214 |
| BstC8I | GCNNGC | 3 cut(s) | 262, 536, 810 |
| BstDEI | CTNAG | 4 cut(s) | 204, 405, 630, 796 |
| BstDSI | CCRYGG | 2 cut(s) | 237, 424 |
| BstF5I | GGATG | 3 cut(s) | 58, 917, 1306 |
| BstFNI | CGCG | 1 cut(s) | 264 |
| BstHHI | GCGC | 1 cut(s) | 399 |
| BstKTI | GATC | 8 cut(s) | 91, 129, 356, 502, 553, 1003, 1106, 1400 |
| BstMAI | GTCTC | 1 cut(s) | 1349 |
| BstMBI | GATC | 8 cut(s) | 88, 126, 353, 499, 550, 1000, 1103, 1397 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 540 |
| BstNI | CCWGG | 1 cut(s) | 136 |
| BstSCI | CCNGG | 1 cut(s) | 134 |
| BstSLI | GKGCMC | 1 cut(s) | 1042 |
| BstUI | CGCG | 1 cut(s) | 264 |
| BstV1I | GCAGC | 2 cut(s) | 195, 1332 |
| BstX2I | RGATCY | 2 cut(s) | 88, 126 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 736, 1085 |
| BstYI | RGATCY | 2 cut(s) | 88, 126 |
| Bsu15I | ATCGAT | 1 cut(s) | 651 |
| BsuI | GTATCC | 1 cut(s) | 886 |
| BsuRI | GGCC | 2 cut(s) | 247, 1096 |
| BsuTUI | ATCGAT | 1 cut(s) | 651 |
| BtgI | CCRYGG | 2 cut(s) | 237, 424 |
| BtgZI | GCGATG | 1 cut(s) | 867 |
| BtsCI | GGATG | 3 cut(s) | 58, 917, 1306 |
| BtsIMutI | CAGTG | 2 cut(s) | 1022, 1274 |
| BveI | ACCTGC | 2 cut(s) | 752, 1325 |
| Cac8I | GCNNGC | 3 cut(s) | 262, 536, 810 |
| CaiI | CAGNNNCTG | 1 cut(s) | 194 |
| CfoI | GCGC | 1 cut(s) | 399 |
| Cfr13I | GGNCC | 5 cut(s) | 74, 241, 246, 254, 717 |
| ClaI | ATCGAT | 1 cut(s) | 651 |
| Csp6I | GTAC | 2 cut(s) | 508, 1310 |
| CviAII | CATG | 9 cut(s) | 112, 176, 238, 367, 458, 768, 958, 1117, 1256 |
| CviQI | GTAC | 2 cut(s) | 508, 1310 |
| DdeI | CTNAG | 4 cut(s) | 204, 405, 630, 796 |
| DpnI | GATC | 8 cut(s) | 90, 128, 355, 501, 552, 1002, 1105, 1399 |
| DpnII | GATC | 8 cut(s) | 88, 126, 353, 499, 550, 1000, 1103, 1397 |
| DriI | GACNNNNNGTC | 1 cut(s) | 723 |
| EaeI | YGGCCR | 1 cut(s) | 1094 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 723 |
| EciI | GGCGGA | 1 cut(s) | 755 |
| Eco130I | CCWWGG | 3 cut(s) | 237, 249, 674 |
| Eco31I | GGTCTC | 1 cut(s) | 1349 |
| Eco47I | GGWCC | 4 cut(s) | 74, 241, 254, 717 |
| Eco57I | CTGAAG | 2 cut(s) | 315, 1298 |
| EcoO109I | RGGNCCY | 3 cut(s) | 74, 254, 717 |
| EcoRII | CCWGG | 1 cut(s) | 134 |
| EcoT14I | CCWWGG | 3 cut(s) | 237, 249, 674 |
| ErhI | CCWWGG | 3 cut(s) | 237, 249, 674 |
| FaeI | CATG | 9 cut(s) | 115, 179, 241, 370, 461, 771, 961, 1120, 1259 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 460, 492, 822, 854 |
| FaqI | GGGAC | 3 cut(s) | 240, 711, 730 |
| FatI | CATG | 9 cut(s) | 111, 175, 237, 366, 457, 767, 957, 1116, 1255 |
| FauI | CCCGC | 2 cut(s) | 265, 930 |
| FbaI | TGATCA | 1 cut(s) | 499 |
| FblI | GTMKAC | 1 cut(s) | 20 |
| Fnu4HI | GCNGC | 2 cut(s) | 209, 1346 |
| FokI | GGATG | 3 cut(s) | 65, 904, 1313 |
| Fsp4HI | GCNGC | 2 cut(s) | 209, 1346 |
| FspBI | CTAG | 3 cut(s) | 801, 809, 1349 |
| FspI | TGCGCA | 1 cut(s) | 398 |
| GlaI | GCGC | 1 cut(s) | 398 |
| GluI | GCNGC | 2 cut(s) | 209, 1346 |
| GsuI | CTGGAG | 1 cut(s) | 1394 |
| HaeIII | GGCC | 2 cut(s) | 247, 1096 |
| HapII | CCGG | 2 cut(s) | 244, 594 |
| HhaI | GCGC | 1 cut(s) | 399 |
| Hin1II | CATG | 9 cut(s) | 115, 179, 241, 370, 461, 771, 961, 1120, 1259 |
| Hin6I | GCGC | 1 cut(s) | 397 |
| HinP1I | GCGC | 1 cut(s) | 397 |
| HindIII | AAGCTT | 1 cut(s) | 1217 |
| HinfI | GANTC | 5 cut(s) | 323, 370, 660, 666, 1031 |
| HpaII | CCGG | 2 cut(s) | 244, 594 |
| HphI | GGTGA | 4 cut(s) | 529, 706, 808, 1175 |
| Hpy166II | GTNNAC | 3 cut(s) | 21, 520, 1040 |
| Hpy188I | TCNGA | 7 cut(s) | 190, 358, 550, 665, 1237, 1263, 1402 |
| Hpy188III | TCNNGA | 4 cut(s) | 65, 270, 484, 1373 |
| Hpy8I | GTNNAC | 3 cut(s) | 21, 520, 1040 |
| HpyAV | CCTTC | 6 cut(s) | 313, 620, 1083, 1180, 1273, 1291 |
| HpyCH4III | ACNGT | 4 cut(s) | 341, 428, 1199, 1421 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 540 |
| HpyF3I | CTNAG | 4 cut(s) | 204, 405, 630, 796 |
| Hsp92II | CATG | 9 cut(s) | 115, 179, 241, 370, 461, 771, 961, 1120, 1259 |
| HspAI | GCGC | 1 cut(s) | 397 |
| KflI | GGGWCCC | 2 cut(s) | 254, 717 |
| Ksp22I | TGATCA | 1 cut(s) | 499 |
| Kzo9I | GATC | 8 cut(s) | 88, 126, 353, 499, 550, 1000, 1103, 1397 |
| LmnI | GCTCC | 3 cut(s) | 138, 758, 793 |
| Lsp1109I | GCAGC | 2 cut(s) | 195, 1332 |
| LweI | GCATC | 3 cut(s) | 432, 489, 1072 |
| MaeI | CTAG | 3 cut(s) | 801, 809, 1349 |
| MaeIII | GTNAC | 2 cut(s) | 419, 527 |
| MalI | GATC | 8 cut(s) | 90, 128, 355, 501, 552, 1002, 1105, 1399 |
| MboI | GATC | 8 cut(s) | 88, 126, 353, 499, 550, 1000, 1103, 1397 |
| MboII | GAAGA | 6 cut(s) | 16, 83, 308, 1069, 1391, 1439 |
| MflI | RGATCY | 2 cut(s) | 88, 126 |
| MhlI | GDGCHC | 2 cut(s) | 790, 1042 |
| MluCI | AATT | 7 cut(s) | 183, 197, 599, 876, 1013, 1153, 1321 |
| MluI | ACGCGT | 1 cut(s) | 262 |
| MlyI | GAGTC | 1 cut(s) | 317 |
| MnlI | CCTC | 5 cut(s) | 220, 732, 1047, 1237, 1369 |
| MseI | TTAA | 4 cut(s) | 708, 1005, 1152, 1215 |
| MslI | CAYNNNNRTG | 5 cut(s) | 110, 429, 824, 996, 1164 |
| MspA1I | CMGCKG | 1 cut(s) | 208 |
| MspCI | CTTAAG | 1 cut(s) | 1214 |
| MspI | CCGG | 2 cut(s) | 244, 594 |
| MspR9I | CCNGG | 1 cut(s) | 136 |
| Mva1269I | GAATGC | 2 cut(s) | 141, 812 |
| MvaI | CCWGG | 1 cut(s) | 136 |
| MvnI | CGCG | 1 cut(s) | 264 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 540 |
| NcoI | CCATGG | 1 cut(s) | 237 |
| NdeII | GATC | 8 cut(s) | 88, 126, 353, 499, 550, 1000, 1103, 1397 |
| NheI | GCTAGC | 1 cut(s) | 808 |
| NlaIII | CATG | 9 cut(s) | 115, 179, 241, 370, 461, 771, 961, 1120, 1259 |
| NlaIV | GGNNCC | 6 cut(s) | 75, 255, 256, 310, 718, 719 |
| NsbI | TGCGCA | 1 cut(s) | 398 |
| OliI | CACNNNNGTG | 1 cut(s) | 824 |
| PctI | GAATGC | 2 cut(s) | 141, 812 |
| PfeI | GAWTC | 4 cut(s) | 370, 660, 666, 1031 |
| PkrI | GCNGC | 2 cut(s) | 210, 1347 |
| PleI | GAGTC | 1 cut(s) | 317 |
| PpsI | GAGTC | 1 cut(s) | 317 |
| PpuMI | RGGWCCY | 3 cut(s) | 74, 254, 717 |
| PsiI | TTATAA | 2 cut(s) | 83, 605 |
| Psp5II | RGGWCCY | 3 cut(s) | 74, 254, 717 |
| Psp6I | CCWGG | 1 cut(s) | 134 |
| PspGI | CCWGG | 1 cut(s) | 134 |
| PspN4I | GGNNCC | 6 cut(s) | 75, 255, 256, 310, 718, 719 |
| PspPI | GGNCC | 5 cut(s) | 74, 241, 246, 254, 717 |
| PspPPI | RGGWCCY | 3 cut(s) | 74, 254, 717 |
| PstNI | CAGNNNCTG | 1 cut(s) | 194 |
| PsuI | RGATCY | 2 cut(s) | 88, 126 |
| PvuII | CAGCTG | 1 cut(s) | 208 |
| RsaI | GTAC | 2 cut(s) | 509, 1311 |
| RsaNI | GTAC | 2 cut(s) | 508, 1310 |
| RseI | CAYNNNNRTG | 5 cut(s) | 110, 429, 824, 996, 1164 |
| SaqAI | TTAA | 4 cut(s) | 708, 1005, 1152, 1215 |
| SatI | GCNGC | 2 cut(s) | 209, 1346 |
| Sau3AI | GATC | 8 cut(s) | 88, 126, 353, 499, 550, 1000, 1103, 1397 |
| Sau96I | GGNCC | 5 cut(s) | 74, 241, 246, 254, 717 |
| ScaI | AGTACT | 1 cut(s) | 1311 |
| SchI | GAGTC | 1 cut(s) | 317 |
| ScrFI | CCNGG | 1 cut(s) | 136 |
| SduI | GDGCHC | 2 cut(s) | 790, 1042 |
| SfaNI | GCATC | 3 cut(s) | 432, 489, 1072 |
| SinI | GGWCC | 4 cut(s) | 74, 241, 254, 717 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 110, 429, 824, 996, 1164 |
| SmlI | CTYRAG | 1 cut(s) | 1214 |
| SmoI | CTYRAG | 1 cut(s) | 1214 |
| Sse9I | AATT | 7 cut(s) | 183, 197, 599, 876, 1013, 1153, 1321 |
| SsiI | CCGC | 3 cut(s) | 258, 740, 923 |
| SspI | AATATT | 1 cut(s) | 1063 |
| SspMI | CTAG | 3 cut(s) | 801, 809, 1349 |
| StyD4I | CCNGG | 1 cut(s) | 134 |
| StyI | CCWWGG | 3 cut(s) | 237, 249, 674 |
| TaaI | ACNGT | 4 cut(s) | 341, 428, 1199, 1421 |
| TaqI | TCGA | 4 cut(s) | 269, 651, 1067, 1412 |
| TasI | AATT | 7 cut(s) | 183, 197, 599, 876, 1013, 1153, 1321 |
| TatI | WGTACW | 2 cut(s) | 507, 1309 |
| TfiI | GAWTC | 4 cut(s) | 370, 660, 666, 1031 |
| Tru1I | TTAA | 4 cut(s) | 708, 1005, 1152, 1215 |
| Tru9I | TTAA | 4 cut(s) | 708, 1005, 1152, 1215 |
| TscAI | CASTG | 2 cut(s) | 1029, 1281 |
| TseI | GCWGC | 2 cut(s) | 208, 1345 |
| TspDTI | ATGAA | 5 cut(s) | 17, 651, 756, 1133, 1195 |
| TspRI | CASTG | 2 cut(s) | 1029, 1281 |
| Vha464I | CTTAAG | 1 cut(s) | 1214 |
| VneI | GTGCAC | 1 cut(s) | 1038 |
| VpaK11BI | GGWCC | 4 cut(s) | 74, 241, 254, 717 |
| XapI | RAATTY | 4 cut(s) | 197, 599, 1013, 1321 |
| XmiI | GTMKAC | 1 cut(s) | 20 |
| XspI | CTAG | 3 cut(s) | 801, 809, 1349 |
| ZrmI | AGTACT | 1 cut(s) | 1311 |