Prupe.3G112400_v2.0.a1

F-box associated

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
9389922 .. 9392777
2856 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G112400.1

Sequence Viewer

Length: 1443 bp
ATGAAGAGGAAAAGAAAGTCTACATCTTGTGCCACCCAAATAGGGAACAAGGATGACCACATTCAAGAAATGGGTCCTTTTATAACAGATCTTCCAAAGTCTATCATTCACATGGTTCTACTAAAGATCCCAACCAGGAGCATTCTCTTGTGCAAGTGTGTATGCAAGACTTGGCATGGTCTAATTTCAGACCCTGAATTTGCTCAGCTGCATTTTGCACAAGCAGAGGTCTTTCCCATGGTCCGGCCCTTGGGTCCCGCACGCGTGTCGAGAACCCTTTACTTTGTTGAGCCTGAAGATAGCTCTGGTTCCTTTTTGAAGGACTCTGGTGCATATTACCGTTATCGTAAGCGATCTGATTTCCACATGATTCTTTCCAAATGTAAAATCCCATTGCGCAATGCTGAGCAAGTAATCAGTAACCACGGTAATGCCAATGTGATGCTTGATAGGAAACATGGCACTACAAGAAAGCCTTGCATCAAGATAAGGCGAAATGATCACAAGTACAATGTGGTGAACTCGTGTAACGGCTTGCTTTGCCTGTCTGATCCATTCTCCAATGACCCTGCTGTTGTGTGCAATCCAATAACCGGAGAATTTATAAACCTTCCCAAAGGTTCTAAACCTGAGAATGAAAAGATTTCAATCGATTGTGGATTCGGATTCAGTCCAAGGACTAACGAATATAAGGTGATAAGAATGTTTAAGCAAGGGACCCCTCGTCCCAATAGGGTGGCGGAGATACACACACTTGGAGCAGGTTCATGGAAATCTGTTGGTAGTGCTCCCTACTTAGCTAGTAAGCTAGCATTCACCACCTATGTGAAAGGAGTGCTTTATTGGTTTTGCGATGAGTGGTCAAGTCTTACTATAATTTCTTTTGACTTGGATACTGAAAAGTTGCAATCAGTTCCATCCCCGCCTTTTGGACGGGAGAAATGTCGTAATGTGGTCATGGGAGTTTTGGGAGATTGTATTTGTGTGTGTCATACAGATGATCTTAAAATCAAATTTTGGACACTGAATGATTCTGGTGCACAAGAACTTTGGAGGAAGAATATTTCGATTGATACCCAAGATGCTGGAAGGTGGCCGTATGGATCATTCAAACCCATGAAATACTTGCAGAATGGGTGTCTGTTGATGTTTAATTCTCATACTAATGCCTTCTTTTACTATCACCCAAGAAACCACAGTCCATTCATTTTTCTTAAGCTTCGTGGGTTCAAGTCAGATTTTGAGGTATTTAGTCATGTTCCGAGCTTTATTTCACTGAAGGATATTCTGGTGGGGAAGGATGTAGAAGTACTGAATATAAATTCAAGGTGTGCAGGTTTGAAGCTGCTAGGAGAGACCAAAGCTCTTTTTCTGGAGGAAGATATTGCAGAGTTGGGATCAGATTTTTATTCGACTGACAGTTGCGAAGATTACGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

481

Amino Acids

54.47

Weight (kDa)

8.74

Isoelectric Point (pI)

36.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 83, 605
Acc16I TGCGCA 1 cut(s) 398
Acc36I ACCTGC 2 cut(s) 752, 1325
AccI GTMKAC 1 cut(s) 20
AccII CGCG 1 cut(s) 264
AciI CCGC 3 cut(s) 258, 740, 923
AclWI GGATC 4 cut(s) 121, 545, 1111, 1405
AcoI YGGCCR 1 cut(s) 1094
AcsI RAATTY 4 cut(s) 197, 599, 1013, 1321
AcuI CTGAAG 2 cut(s) 315, 1298
AfaI GTAC 2 cut(s) 509, 1311
AfiI CCNNNNNNNGG 5 cut(s) 42, 243, 250, 593, 929
AflII CTTAAG 1 cut(s) 1214
AflIII ACRYGT 1 cut(s) 262
AgsI TTSAA 7 cut(s) 65, 319, 648, 1111, 1231, 1326, 1342
AhdI GACNNNNNGTC 1 cut(s) 723
AjnI CCWGG 1 cut(s) 134
AleI CACNNNNGTG 1 cut(s) 824
AluBI AGCT 8 cut(s) 208, 303, 800, 808, 1219, 1266, 1345, 1364
AluI AGCT 8 cut(s) 208, 303, 800, 808, 1219, 1266, 1345, 1364
Alw21I GWGCWC 2 cut(s) 790, 1042
Alw26I GTCTC 1 cut(s) 1349
Alw44I GTGCAC 1 cut(s) 1038
AlwI GGATC 4 cut(s) 121, 545, 1111, 1405
AlwNI CAGNNNCTG 1 cut(s) 194
AoxI GGCC 2 cut(s) 245, 1094
ApaLI GTGCAC 1 cut(s) 1038
ApeKI GCWGC 2 cut(s) 208, 1345
ApoI RAATTY 4 cut(s) 197, 599, 1013, 1321
ArsI GACNNNNNNTTYG 2 cut(s) 182, 214
AspLEI GCGC 1 cut(s) 399
AspS9I GGNCC 5 cut(s) 74, 241, 246, 254, 717
AsuHPI GGTGA 4 cut(s) 529, 706, 808, 1175
AsuNHI GCTAGC 1 cut(s) 808
AvaII GGWCC 4 cut(s) 74, 241, 254, 717
BaeGI GKGCMC 1 cut(s) 1042
BauI CACGAG 1 cut(s) 523
Bbv12I GWGCWC 2 cut(s) 790, 1042
BbvI GCAGC 2 cut(s) 195, 1332
BccI CCATC 1 cut(s) 925
BceAI ACGGC 2 cut(s) 547, 1081
BcgI CGANNNNNNTGC 2 cut(s) 249, 283
BciT130I CCWGG 1 cut(s) 136
BciVI GTATCC 1 cut(s) 886
BclI TGATCA 1 cut(s) 499
BcoDI GTCTC 1 cut(s) 1349
BfaI CTAG 3 cut(s) 801, 809, 1349
BfrI CTTAAG 1 cut(s) 1214
BfuAI ACCTGC 2 cut(s) 752, 1325
BfuI GTATCC 1 cut(s) 886
BglII AGATCT 1 cut(s) 88
BisI GCNGC 2 cut(s) 209, 1346
BlpI GCTNAGC 2 cut(s) 204, 405
BlsI GCNGC 2 cut(s) 210, 1347
BmcAI AGTACT 1 cut(s) 1311
Bme1390I CCNGG 1 cut(s) 136
Bme18I GGWCC 4 cut(s) 74, 241, 254, 717
BmeRI GACNNNNNGTC 1 cut(s) 723
BmgT120I GGNCC 5 cut(s) 74, 241, 246, 254, 717
BmiI GGNNCC 6 cut(s) 75, 255, 256, 310, 718, 719
BmrFI CCNGG 1 cut(s) 136
BmsI GCATC 3 cut(s) 432, 489, 1072
BmtI GCTAGC 1 cut(s) 812
BpmI CTGGAG 1 cut(s) 1394
Bpu1102I GCTNAGC 2 cut(s) 204, 405
Bsa29I ATCGAT 1 cut(s) 651
BsaBI GATNNNNATC 1 cut(s) 647
BsaI GGTCTC 1 cut(s) 1349
BsaJI CCNNGG 4 cut(s) 237, 249, 424, 674
BsaWI WCCGGW 1 cut(s) 593
Bsc4I CCNNNNNNNGG 5 cut(s) 42, 243, 250, 593, 929
Bse3DI GCAATG 2 cut(s) 392, 406
Bse8I GATNNNNATC 1 cut(s) 647
BseBI CCWGG 1 cut(s) 136
BseCI ATCGAT 1 cut(s) 651
BseDI CCNNGG 4 cut(s) 237, 249, 424, 674
BseGI GGATG 3 cut(s) 58, 917, 1306
BseJI GATNNNNATC 1 cut(s) 647
BseLI CCNNNNNNNGG 5 cut(s) 42, 243, 250, 593, 929
BseMI GCAATG 2 cut(s) 392, 406
BseMII CTCAG 3 cut(s) 218, 396, 621
BseSI GKGCMC 1 cut(s) 1042
BseXI GCAGC 2 cut(s) 195, 1332
BsgI GTGCAG 1 cut(s) 1353
Bsh1236I CGCG 1 cut(s) 264
BshFI GGCC 2 cut(s) 247, 1096
BshVI ATCGAT 1 cut(s) 651
BsiHKAI GWGCWC 2 cut(s) 790, 1042
BsiSI CCGG 2 cut(s) 244, 594
BslFI GGGAC 3 cut(s) 240, 711, 730
BslI CCNNNNNNNGG 5 cut(s) 42, 243, 250, 593, 929
BsmAI GTCTC 1 cut(s) 1349
BsmFI GGGAC 3 cut(s) 240, 711, 730
BsmI GAATGC 2 cut(s) 141, 812
BsnI GGCC 2 cut(s) 247, 1096
Bso31I GGTCTC 1 cut(s) 1349
Bsp1286I GDGCHC 2 cut(s) 790, 1042
Bsp143I GATC 8 cut(s) 88, 126, 353, 499, 550, 1000, 1103, 1397
Bsp1720I GCTNAGC 2 cut(s) 204, 405
Bsp19I CCATGG 1 cut(s) 237
BspACI CCGC 3 cut(s) 258, 740, 923
BspANI GGCC 2 cut(s) 247, 1096
BspCNI CTCAG 3 cut(s) 217, 397, 622
BspDI ATCGAT 1 cut(s) 651
BspFNI CGCG 1 cut(s) 264
BspLI GGNNCC 6 cut(s) 75, 255, 256, 310, 718, 719
BspMI ACCTGC 2 cut(s) 752, 1325
BspOI GCTAGC 1 cut(s) 812
BspPI GGATC 4 cut(s) 121, 545, 1111, 1405
BspTI CTTAAG 1 cut(s) 1214
BspTNI GGTCTC 1 cut(s) 1349
BsrDI GCAATG 2 cut(s) 392, 406
BssECI CCNNGG 4 cut(s) 237, 249, 424, 674
BssMI GATC 8 cut(s) 88, 126, 353, 499, 550, 1000, 1103, 1397
BssSI CACGAG 1 cut(s) 523
BssT1I CCWWGG 3 cut(s) 237, 249, 674
Bst2BI CACGAG 1 cut(s) 523
Bst2UI CCWGG 1 cut(s) 136
Bst4CI ACNGT 4 cut(s) 341, 428, 1199, 1421
BstAFI CTTAAG 1 cut(s) 1214
BstC8I GCNNGC 3 cut(s) 262, 536, 810
BstDEI CTNAG 4 cut(s) 204, 405, 630, 796
BstDSI CCRYGG 2 cut(s) 237, 424
BstF5I GGATG 3 cut(s) 58, 917, 1306
BstFNI CGCG 1 cut(s) 264
BstHHI GCGC 1 cut(s) 399
BstKTI GATC 8 cut(s) 91, 129, 356, 502, 553, 1003, 1106, 1400
BstMAI GTCTC 1 cut(s) 1349
BstMBI GATC 8 cut(s) 88, 126, 353, 499, 550, 1000, 1103, 1397
BstMWI GCNNNNNNNGC 1 cut(s) 540
BstNI CCWGG 1 cut(s) 136
BstSCI CCNGG 1 cut(s) 134
BstSLI GKGCMC 1 cut(s) 1042
BstUI CGCG 1 cut(s) 264
BstV1I GCAGC 2 cut(s) 195, 1332
BstX2I RGATCY 2 cut(s) 88, 126
BstXI CCANNNNNNTGG 2 cut(s) 736, 1085
BstYI RGATCY 2 cut(s) 88, 126
Bsu15I ATCGAT 1 cut(s) 651
BsuI GTATCC 1 cut(s) 886
BsuRI GGCC 2 cut(s) 247, 1096
BsuTUI ATCGAT 1 cut(s) 651
BtgI CCRYGG 2 cut(s) 237, 424
BtgZI GCGATG 1 cut(s) 867
BtsCI GGATG 3 cut(s) 58, 917, 1306
BtsIMutI CAGTG 2 cut(s) 1022, 1274
BveI ACCTGC 2 cut(s) 752, 1325
Cac8I GCNNGC 3 cut(s) 262, 536, 810
CaiI CAGNNNCTG 1 cut(s) 194
CfoI GCGC 1 cut(s) 399
Cfr13I GGNCC 5 cut(s) 74, 241, 246, 254, 717
ClaI ATCGAT 1 cut(s) 651
Csp6I GTAC 2 cut(s) 508, 1310
CviAII CATG 9 cut(s) 112, 176, 238, 367, 458, 768, 958, 1117, 1256
CviQI GTAC 2 cut(s) 508, 1310
DdeI CTNAG 4 cut(s) 204, 405, 630, 796
DpnI GATC 8 cut(s) 90, 128, 355, 501, 552, 1002, 1105, 1399
DpnII GATC 8 cut(s) 88, 126, 353, 499, 550, 1000, 1103, 1397
DriI GACNNNNNGTC 1 cut(s) 723
EaeI YGGCCR 1 cut(s) 1094
Eam1105I GACNNNNNGTC 1 cut(s) 723
EciI GGCGGA 1 cut(s) 755
Eco130I CCWWGG 3 cut(s) 237, 249, 674
Eco31I GGTCTC 1 cut(s) 1349
Eco47I GGWCC 4 cut(s) 74, 241, 254, 717
Eco57I CTGAAG 2 cut(s) 315, 1298
EcoO109I RGGNCCY 3 cut(s) 74, 254, 717
EcoRII CCWGG 1 cut(s) 134
EcoT14I CCWWGG 3 cut(s) 237, 249, 674
ErhI CCWWGG 3 cut(s) 237, 249, 674
FaeI CATG 9 cut(s) 115, 179, 241, 370, 461, 771, 961, 1120, 1259
FalI AAGNNNNNCTT 4 cut(s) 460, 492, 822, 854
FaqI GGGAC 3 cut(s) 240, 711, 730
FatI CATG 9 cut(s) 111, 175, 237, 366, 457, 767, 957, 1116, 1255
FauI CCCGC 2 cut(s) 265, 930
FbaI TGATCA 1 cut(s) 499
FblI GTMKAC 1 cut(s) 20
Fnu4HI GCNGC 2 cut(s) 209, 1346
FokI GGATG 3 cut(s) 65, 904, 1313
Fsp4HI GCNGC 2 cut(s) 209, 1346
FspBI CTAG 3 cut(s) 801, 809, 1349
FspI TGCGCA 1 cut(s) 398
GlaI GCGC 1 cut(s) 398
GluI GCNGC 2 cut(s) 209, 1346
GsuI CTGGAG 1 cut(s) 1394
HaeIII GGCC 2 cut(s) 247, 1096
HapII CCGG 2 cut(s) 244, 594
HhaI GCGC 1 cut(s) 399
Hin1II CATG 9 cut(s) 115, 179, 241, 370, 461, 771, 961, 1120, 1259
Hin6I GCGC 1 cut(s) 397
HinP1I GCGC 1 cut(s) 397
HindIII AAGCTT 1 cut(s) 1217
HinfI GANTC 5 cut(s) 323, 370, 660, 666, 1031
HpaII CCGG 2 cut(s) 244, 594
HphI GGTGA 4 cut(s) 529, 706, 808, 1175
Hpy166II GTNNAC 3 cut(s) 21, 520, 1040
Hpy188I TCNGA 7 cut(s) 190, 358, 550, 665, 1237, 1263, 1402
Hpy188III TCNNGA 4 cut(s) 65, 270, 484, 1373
Hpy8I GTNNAC 3 cut(s) 21, 520, 1040
HpyAV CCTTC 6 cut(s) 313, 620, 1083, 1180, 1273, 1291
HpyCH4III ACNGT 4 cut(s) 341, 428, 1199, 1421
HpyF10VI GCNNNNNNNGC 1 cut(s) 540
HpyF3I CTNAG 4 cut(s) 204, 405, 630, 796
Hsp92II CATG 9 cut(s) 115, 179, 241, 370, 461, 771, 961, 1120, 1259
HspAI GCGC 1 cut(s) 397
KflI GGGWCCC 2 cut(s) 254, 717
Ksp22I TGATCA 1 cut(s) 499
Kzo9I GATC 8 cut(s) 88, 126, 353, 499, 550, 1000, 1103, 1397
LmnI GCTCC 3 cut(s) 138, 758, 793
Lsp1109I GCAGC 2 cut(s) 195, 1332
LweI GCATC 3 cut(s) 432, 489, 1072
MaeI CTAG 3 cut(s) 801, 809, 1349
MaeIII GTNAC 2 cut(s) 419, 527
MalI GATC 8 cut(s) 90, 128, 355, 501, 552, 1002, 1105, 1399
MboI GATC 8 cut(s) 88, 126, 353, 499, 550, 1000, 1103, 1397
MboII GAAGA 6 cut(s) 16, 83, 308, 1069, 1391, 1439
MflI RGATCY 2 cut(s) 88, 126
MhlI GDGCHC 2 cut(s) 790, 1042
MluCI AATT 7 cut(s) 183, 197, 599, 876, 1013, 1153, 1321
MluI ACGCGT 1 cut(s) 262
MlyI GAGTC 1 cut(s) 317
MnlI CCTC 5 cut(s) 220, 732, 1047, 1237, 1369
MseI TTAA 4 cut(s) 708, 1005, 1152, 1215
MslI CAYNNNNRTG 5 cut(s) 110, 429, 824, 996, 1164
MspA1I CMGCKG 1 cut(s) 208
MspCI CTTAAG 1 cut(s) 1214
MspI CCGG 2 cut(s) 244, 594
MspR9I CCNGG 1 cut(s) 136
Mva1269I GAATGC 2 cut(s) 141, 812
MvaI CCWGG 1 cut(s) 136
MvnI CGCG 1 cut(s) 264
MwoI GCNNNNNNNGC 1 cut(s) 540
NcoI CCATGG 1 cut(s) 237
NdeII GATC 8 cut(s) 88, 126, 353, 499, 550, 1000, 1103, 1397
NheI GCTAGC 1 cut(s) 808
NlaIII CATG 9 cut(s) 115, 179, 241, 370, 461, 771, 961, 1120, 1259
NlaIV GGNNCC 6 cut(s) 75, 255, 256, 310, 718, 719
NsbI TGCGCA 1 cut(s) 398
OliI CACNNNNGTG 1 cut(s) 824
PctI GAATGC 2 cut(s) 141, 812
PfeI GAWTC 4 cut(s) 370, 660, 666, 1031
PkrI GCNGC 2 cut(s) 210, 1347
PleI GAGTC 1 cut(s) 317
PpsI GAGTC 1 cut(s) 317
PpuMI RGGWCCY 3 cut(s) 74, 254, 717
PsiI TTATAA 2 cut(s) 83, 605
Psp5II RGGWCCY 3 cut(s) 74, 254, 717
Psp6I CCWGG 1 cut(s) 134
PspGI CCWGG 1 cut(s) 134
PspN4I GGNNCC 6 cut(s) 75, 255, 256, 310, 718, 719
PspPI GGNCC 5 cut(s) 74, 241, 246, 254, 717
PspPPI RGGWCCY 3 cut(s) 74, 254, 717
PstNI CAGNNNCTG 1 cut(s) 194
PsuI RGATCY 2 cut(s) 88, 126
PvuII CAGCTG 1 cut(s) 208
RsaI GTAC 2 cut(s) 509, 1311
RsaNI GTAC 2 cut(s) 508, 1310
RseI CAYNNNNRTG 5 cut(s) 110, 429, 824, 996, 1164
SaqAI TTAA 4 cut(s) 708, 1005, 1152, 1215
SatI GCNGC 2 cut(s) 209, 1346
Sau3AI GATC 8 cut(s) 88, 126, 353, 499, 550, 1000, 1103, 1397
Sau96I GGNCC 5 cut(s) 74, 241, 246, 254, 717
ScaI AGTACT 1 cut(s) 1311
SchI GAGTC 1 cut(s) 317
ScrFI CCNGG 1 cut(s) 136
SduI GDGCHC 2 cut(s) 790, 1042
SfaNI GCATC 3 cut(s) 432, 489, 1072
SinI GGWCC 4 cut(s) 74, 241, 254, 717
SmiMI CAYNNNNRTG 5 cut(s) 110, 429, 824, 996, 1164
SmlI CTYRAG 1 cut(s) 1214
SmoI CTYRAG 1 cut(s) 1214
Sse9I AATT 7 cut(s) 183, 197, 599, 876, 1013, 1153, 1321
SsiI CCGC 3 cut(s) 258, 740, 923
SspI AATATT 1 cut(s) 1063
SspMI CTAG 3 cut(s) 801, 809, 1349
StyD4I CCNGG 1 cut(s) 134
StyI CCWWGG 3 cut(s) 237, 249, 674
TaaI ACNGT 4 cut(s) 341, 428, 1199, 1421
TaqI TCGA 4 cut(s) 269, 651, 1067, 1412
TasI AATT 7 cut(s) 183, 197, 599, 876, 1013, 1153, 1321
TatI WGTACW 2 cut(s) 507, 1309
TfiI GAWTC 4 cut(s) 370, 660, 666, 1031
Tru1I TTAA 4 cut(s) 708, 1005, 1152, 1215
Tru9I TTAA 4 cut(s) 708, 1005, 1152, 1215
TscAI CASTG 2 cut(s) 1029, 1281
TseI GCWGC 2 cut(s) 208, 1345
TspDTI ATGAA 5 cut(s) 17, 651, 756, 1133, 1195
TspRI CASTG 2 cut(s) 1029, 1281
Vha464I CTTAAG 1 cut(s) 1214
VneI GTGCAC 1 cut(s) 1038
VpaK11BI GGWCC 4 cut(s) 74, 241, 254, 717
XapI RAATTY 4 cut(s) 197, 599, 1013, 1321
XmiI GTMKAC 1 cut(s) 20
XspI CTAG 3 cut(s) 801, 809, 1349
ZrmI AGTACT 1 cut(s) 1311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.