Rh2DG373300

F-box associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0004545
Physical Location & Seq
Reverse (-)
53123780 .. 53124274
495 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG373300.1

Sequence Viewer

Length: 495 bp
ATGACAGGAGTGATCTATTGGTTTTACCGTGAGCTTTCTTCGTCTTGCATAGATTCTTTTGACATTGACAATGGAAGGTTCCAGTCAGTTCCACCACTTCCTTTTGAACTGAGAACAAGTAATCATCATGTTAGCTTGGGAGTTTTAGGTGATTTTCTTTCTGTGTGTGAAGTAGCTTTCCTTGATGACATTAATGTGTGGGTAATGATAGATAATGGTGGAGAGAAGTCTTGGATGAAAGAACTATGTATTTGTACTTTTTGTCACGAAAGGCAGTGGCCGTTTGGCTTATATCAACCGATGAAATACTCTCACAATGGAGGTTTGGTGATCTTTCATTCTAGTAGTAATGCCTTCATGTACTATCACCCAAAAGACCAAACATACAAATACCTTAAGCTTTGCGGATCTCAATCAAATTGTGAAGCCGTTAGTCATGTTCCAACCTTCATTTCGCTCAAGAACATTTTAACTGGGGCCAAAACAGAAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

164

Amino Acids

18.75

Weight (kDa)

5.93

Isoelectric Point (pI)

45.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 2 - 149 2.4e-07 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 405
AclWI GGATC 1 cut(s) 415
AcoI YGGCCR 1 cut(s) 278
AfaI GTAC 2 cut(s) 256, 362
AflII CTTAAG 1 cut(s) 395
AgsI TTSAA 1 cut(s) 107
AjuI GAANNNNNNNTTGG 2 cut(s) 436, 468
AluBI AGCT 4 cut(s) 34, 135, 176, 400
AluI AGCT 4 cut(s) 34, 135, 176, 400
AlwI GGATC 1 cut(s) 415
AoxI GGCC 2 cut(s) 278, 477
AseI ATTAAT 1 cut(s) 192
AspS9I GGNCC 1 cut(s) 477
AsuHPI GGTGA 3 cut(s) 161, 340, 359
BceAI ACGGC 2 cut(s) 265, 413
BfaI CTAG 1 cut(s) 342
BfrI CTTAAG 1 cut(s) 395
BmgT120I GGNCC 1 cut(s) 477
BmiI GGNNCC 2 cut(s) 80, 478
BmrI ACTGGG 1 cut(s) 483
BmuI ACTGGG 1 cut(s) 483
BpuEI CTTGAG 1 cut(s) 443
BsaBI GATNNNNATC 1 cut(s) 412
BsaXI ACNNNNNCTCC 2 cut(s) 312, 342
Bse1I ACTGG 2 cut(s) 82, 478
Bse8I GATNNNNATC 1 cut(s) 412
BseGI GGATG 1 cut(s) 240
BseJI GATNNNNATC 1 cut(s) 412
BseMII CTCAG 1 cut(s) 101
BseNI ACTGG 2 cut(s) 82, 478
BshFI GGCC 2 cut(s) 280, 479
BsnI GGCC 2 cut(s) 280, 479
Bsp143I GATC 3 cut(s) 12, 330, 407
BspACI CCGC 1 cut(s) 405
BspANI GGCC 2 cut(s) 280, 479
BspCNI CTCAG 1 cut(s) 102
BspLI GGNNCC 2 cut(s) 80, 478
BspPI GGATC 1 cut(s) 415
BspTI CTTAAG 1 cut(s) 395
BsrI ACTGG 2 cut(s) 82, 478
BssMI GATC 3 cut(s) 12, 330, 407
Bst4CI ACNGT 1 cut(s) 29
BstAFI CTTAAG 1 cut(s) 395
BstDEI CTNAG 1 cut(s) 110
BstF5I GGATG 1 cut(s) 240
BstKTI GATC 3 cut(s) 15, 333, 410
BstMBI GATC 3 cut(s) 12, 330, 407
BstX2I RGATCY 1 cut(s) 407
BstYI RGATCY 1 cut(s) 407
BsuRI GGCC 2 cut(s) 280, 479
BtsCI GGATG 1 cut(s) 240
BtsI GCAGTG 1 cut(s) 281
BtsIMutI CAGTG 1 cut(s) 281
Cfr13I GGNCC 1 cut(s) 477
Csp6I GTAC 2 cut(s) 255, 361
CviAII CATG 3 cut(s) 128, 358, 437
CviJI RGCY 8 cut(s) 34, 135, 176, 280, 288, 400, 428, 479
CviKI_1 RGCY 8 cut(s) 34, 135, 176, 280, 288, 400, 428, 479
CviQI GTAC 2 cut(s) 255, 361
DdeI CTNAG 1 cut(s) 110
DpnI GATC 3 cut(s) 14, 332, 409
DpnII GATC 3 cut(s) 12, 330, 407
EaeI YGGCCR 1 cut(s) 278
FaeI CATG 3 cut(s) 131, 361, 440
FaiI YATR 8 cut(s) 50, 129, 247, 292, 359, 385, 438, 493
FatI CATG 3 cut(s) 127, 357, 436
FokI GGATG 1 cut(s) 247
FspBI CTAG 1 cut(s) 342
HaeIII GGCC 2 cut(s) 280, 479
Hin1II CATG 3 cut(s) 131, 361, 440
HindIII AAGCTT 1 cut(s) 398
HinfI GANTC 1 cut(s) 53
HphI GGTGA 3 cut(s) 161, 340, 359
Hpy188III TCNNGA 2 cut(s) 266, 460
HpyAV CCTTC 3 cut(s) 69, 364, 457
HpyCH4III ACNGT 1 cut(s) 29
HpyCH4V TGCA 1 cut(s) 48
HpyF3I CTNAG 1 cut(s) 110
Hsp92II CATG 3 cut(s) 131, 361, 440
Kzo9I GATC 3 cut(s) 12, 330, 407
LpnPI CCDG 2 cut(s) 95, 459
MaeI CTAG 1 cut(s) 342
MaeIII GTNAC 1 cut(s) 263
MalI GATC 3 cut(s) 14, 332, 409
MboI GATC 3 cut(s) 12, 330, 407
MboII GAAGA 1 cut(s) 30
MflI RGATCY 1 cut(s) 407
MluCI AATT 1 cut(s) 418
MmeI TCCRAC 1 cut(s) 467
MnlI CCTC 1 cut(s) 314
MseI TTAA 3 cut(s) 192, 396, 470
MslI CAYNNNNRTG 1 cut(s) 194
MspCI CTTAAG 1 cut(s) 395
NdeII GATC 3 cut(s) 12, 330, 407
NlaIII CATG 3 cut(s) 131, 361, 440
NlaIV GGNNCC 2 cut(s) 80, 478
NmuCI GTSAC 1 cut(s) 263
PfeI GAWTC 1 cut(s) 53
PshBI ATTAAT 1 cut(s) 192
PspN4I GGNNCC 2 cut(s) 80, 478
PspPI GGNCC 1 cut(s) 477
PsuI RGATCY 1 cut(s) 407
RsaI GTAC 2 cut(s) 256, 362
RsaNI GTAC 2 cut(s) 255, 361
RseI CAYNNNNRTG 1 cut(s) 194
SaqAI TTAA 3 cut(s) 192, 396, 470
Sau3AI GATC 3 cut(s) 12, 330, 407
Sau96I GGNCC 1 cut(s) 477
SetI ASST 9 cut(s) 36, 80, 137, 151, 178, 325, 396, 402, 449
SmiMI CAYNNNNRTG 1 cut(s) 194
SmlI CTYRAG 2 cut(s) 395, 458
SmoI CTYRAG 2 cut(s) 395, 458
Sse9I AATT 1 cut(s) 418
SsiI CCGC 1 cut(s) 405
SspMI CTAG 1 cut(s) 342
TaaI ACNGT 1 cut(s) 29
TasI AATT 1 cut(s) 418
TatI WGTACW 2 cut(s) 254, 360
TfiI GAWTC 1 cut(s) 53
Tru1I TTAA 3 cut(s) 192, 396, 470
Tru9I TTAA 3 cut(s) 192, 396, 470
TscAI CASTG 1 cut(s) 281
TseFI GTSAC 1 cut(s) 263
Tsp45I GTSAC 1 cut(s) 263
TspDTI ATGAA 5 cut(s) 251, 317, 326, 346, 439
TspRI CASTG 1 cut(s) 281
Vha464I CTTAAG 1 cut(s) 395
VspI ATTAAT 1 cut(s) 192
XspI CTAG 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.