Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0004545

Physical Location & Seq

Genomic Coordinates Reverse (-)

43906907 .. 43918500

Gene Structure 11594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG333900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1563 bp

ATGGCGCTGCTCAGATCTACCGCCTTAGCTCCGTTGATCGAAGCCTCGCGCACCGACTTCTCTTTCTCCACCTCTGCTTCCTTCAAGGTTCCTAGGATGGCTATGAAAAGGAAAAGGAAGTCAATAGCTTGTCCCACCAAAGTAGGCAACAAAGATGAACACATTGAACAAATGGGCCCTGTTATAACAGATCTTCCTAAGTTTATTTGTCAAATCATTCTGCTAAAGCTCCCAACACGCAGCATTCTCATATGCAAATGTGTATGCAAGACTTGGCGTGTGCTAATTTCTGAGCCGGAATTTGCCAAGATGCACTTTGCACAAGCAGAGGCCTATCCCATGGTCCGACCTTGGGGACCAACACGGGTGTCAAGAACCCTTTACTTGGTTGAACCTGAAGATGAATTCAGTTTGGCTATAAAGGACAAGGACTATTTGTCCGATTGTGACTATGGCTCATTGAAGTTTGACAAGTGTCATTTCCGCATGAATCTTGCCAAATATAAATTACCATTGCGGGATGCTGAGAAGGTAATGAATAATGATGATAATGTCAATCTGATGCGTAATAGGAAACATGGCACTAAAAGGATCCCTTGCATCAAGATTAGGCCCAACGATCACAAATACAATGTGGTGAATTCGTGCAACGGCTTCCTTTGTTTGTCTGAACCAATTTTTAATGACCCAGTTGTTGTCTGCAACCCTGTAACAGGAGAGTTTATGCACCTTCCTGAAGCTTCTAAGTGGGAGAACCAAAAGGTTACCATCCATTGCGGAATTGGTTTCAGTCCAAAAGCTAACAGATATAAGGTGGTGCGAATCTTTGATCAAGGGTCACCTCATCCTATTACGATGGCTGAGGTACACACTCTTGGGTCAAGTTCATGGAAACTCATTGGTAGTTGTCCCTGCTCATCATATAACCAGCTAGCGTTCCCCACCTATATTGAAGGAGCACTTTATTGGTTTTACTATGATCCTTTAAAATATGTCATACTTTCATTTGACTTGGACAGTGAGAACTTCCAATCACTTCCACCACTGCCTTTTCAACGAGAGCAATATCGTAATGTGAGCATGGGAGTTTTGGGAAATTGCCTTTGTGTCTGTGATGCTCATGGTATTCATATCAATTTGTGGGTACTGAAAAATCATGGTGCAAAAAGATCTTGGAGGAGGAAGATTTCTATTGAAACAGATCATTTTGGGTTTGATGGTGAAAGGTGGCCTTCTGGCTTATATAAACCAATGAAATACTGTAAGGATGGGGGCTTGTTGATGTTTAACTATCGTACTAATGCGTTGATTTACCATCATCCAAAAACCCACAGATTTATTTATCTTCGTGGCATCAAGTCAAATTTTTCAGCTATCAGTCATGTTCCAAGCTTTATTTCACTCAAGGACATTTTGGTGGGGGATGATGTCAACATACTGAATATAAATTCAAGGTGTGCACAGATGAAGCTGCTAGGAGAGACAAGAGCTCTTTTTCTGGAGGAAGAAATTGCAGATTTAGCATCAGACTTTTTCACGTCTGATAGTAGCGATGAAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

520

Amino Acids

59.55

Weight (kDa)

8.82

Isoelectric Point (pI)

46.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	62 - 101	3.4e-06	F-box domain
FBA_1	PF07734	201 - 397	5e-24	F-box associated beta propeller domain
FBA_3	PF08268	206 - 398	1.9e-22	F-box associated beta propeller domain
Beta-prop_KIB1-4	PF03478	207 - 393	1.1e-07	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004545)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g27870 FvH4_6g28330
malus_domestica	MD01G1181800.v1.1 MD17G1263300.v1.1
prunus_persica	Prupe.3G111700_v2.0.a1 Prupe.3G112000_v2.0.a1 Prupe.3G112200_v2.0.a1 Prupe.3G112200_v2.0.a1 Prupe.3G112400_v2.0.a1 Prupe.3G112400_v2.0.a1
pyrus_communis	pycom17g26350
rosa_chinensis	RchiOBHm_Chr2g0131131
rosa_laevigata	RLG00000019173 RLG00000019176
rosa_multiflora	Rmu_sc0003629.1_g000070
rosa_roxburghii	Rroxscaffold_2G00113130
rosa_rugosa	Rorug02G0327300
rosa_samantha	Rh2AG347600 Rh2AG348000 Rh2BG355200 Rh2BG355300 Rh2CG333800 Rh2CG333900 Rh2CG334000 Rh2CG335100 Rh2DG373000 Rh2DG373300 Rh2DG374100
rosa_wichuraiana	Rw2G028230 Rw2G028250 Rw2G028280 Rw2G028310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	185
AccII	CGCG	1 cut(s)	49
AciI	CCGC	4 cut(s)	21, 484, 517, 777
AclWI	GGATC	3 cut(s)	586, 599, 974
AcsI	RAATTY	5 cut(s)	299, 404, 640, 1363, 1447
AcuI	CTGAAG	2 cut(s)	417, 756
AfaI	GTAC	3 cut(s)	867, 1146, 1297
AfiI	CCNNNNNNNGG	3 cut(s)	352, 385, 713
AgsI	TTSAA	8 cut(s)	85, 167, 392, 463, 953, 1055, 1196, 1452
AhdI	GACNNNNNGTC	1 cut(s)	436
AjiI	CACGTC	1 cut(s)	1539
AjuI	GAANNNNNNNTTGG	2 cut(s)	1381, 1413
Alw21I	GWGCWC	3 cut(s)	961, 1462, 1492
Alw26I	GTCTC	1 cut(s)	1475
Alw44I	GTGCAC	1 cut(s)	1458
AlwI	GGATC	3 cut(s)	586, 599, 974
AoxI	GGCC	4 cut(s)	175, 330, 611, 1229
ApaI	GGGCCC	1 cut(s)	179
ApaLI	GTGCAC	1 cut(s)	1458
ApeKI	GCWGC	3 cut(s)	7, 240, 1471
ApoI	RAATTY	5 cut(s)	299, 404, 640, 1363, 1447
AspA2I	CCTAGG	1 cut(s)	92
AspLEI	GCGC	2 cut(s)	7, 51
AspS9I	GGNCC	5 cut(s)	175, 176, 343, 356, 612
AsuHPI	GGTGA	3 cut(s)	649, 831, 1232
AsuNHI	GCTAGC	1 cut(s)	931
AvaII	GGWCC	2 cut(s)	343, 356
AvrII	CCTAGG	1 cut(s)	92
BaeGI	GKGCMC	2 cut(s)	179, 1462
BamHI	GGATCC	1 cut(s)	591
BanII	GRGCYC	2 cut(s)	179, 1492
Bbv12I	GWGCWC	3 cut(s)	961, 1462, 1492
BbvCI	CCTCAGC	1 cut(s)	861
BbvI	GCAGC	2 cut(s)	252, 1458
BccI	CCATC	6 cut(s)	91, 776, 850, 1211, 1262, 1323
BceAI	ACGGC	1 cut(s)	667
BclI	TGATCA	1 cut(s)	829
BcoDI	GTCTC	1 cut(s)	1475
BfaI	CTAG	3 cut(s)	93, 932, 1475
BfoI	RGCGCY	1 cut(s)	8
BglII	AGATCT	3 cut(s)	14, 190, 1169
BisI	GCNGC	3 cut(s)	8, 241, 1472
BlnI	CCTAGG	1 cut(s)	92
BlsI	GCNGC	3 cut(s)	9, 242, 1473
Bme18I	GGWCC	2 cut(s)	343, 356
BmeRI	GACNNNNNGTC	1 cut(s)	436
BmgBI	CACGTC	1 cut(s)	1539
BmgT120I	GGNCC	5 cut(s)	175, 176, 343, 356, 612
BmiI	GGNNCC	4 cut(s)	90, 177, 357, 593
BmrI	ACTGGG	1 cut(s)	683
BmsI	GCATC	7 cut(s)	300, 511, 552, 609, 1105, 1362, 1532
BmtI	GCTAGC	1 cut(s)	935
BmuI	ACTGGG	1 cut(s)	683
BoxI	GACNNNNGTC	1 cut(s)	474
BpmI	CTGGAG	1 cut(s)	1520
Bpu10I	CCTNAGC	2 cut(s)	25, 861
BpuEI	CTTGAG	1 cut(s)	1388
BsaJI	CCNNGG	3 cut(s)	92, 339, 350
Bsc4I	CCNNNNNNNGG	3 cut(s)	352, 385, 713
Bse1I	ACTGG	1 cut(s)	689
Bse3DI	GCAATG	2 cut(s)	512, 772
BseDI	CCNNGG	3 cut(s)	92, 339, 350
BseGI	GGATG	7 cut(s)	102, 526, 768, 844, 1273, 1318, 1429
BseLI	CCNNNNNNNGG	3 cut(s)	352, 385, 713
BseMI	GCAATG	2 cut(s)	512, 772
BseMII	CTCAG	4 cut(s)	25, 282, 516, 852
BseNI	ACTGG	1 cut(s)	689
BseRI	GAGGAG	1 cut(s)	1192
BseSI	GKGCMC	2 cut(s)	179, 1462
BseXI	GCAGC	2 cut(s)	252, 1458
Bsh1236I	CGCG	1 cut(s)	49
BshFI	GGCC	4 cut(s)	177, 332, 613, 1231
BsiHKAI	GWGCWC	3 cut(s)	961, 1462, 1492
BsiSI	CCGG	1 cut(s)	296
BslFI	GGGAC	3 cut(s)	117, 369, 894
BslI	CCNNNNNNNGG	3 cut(s)	352, 385, 713
BsmAI	GTCTC	1 cut(s)	1475
BsmFI	GGGAC	3 cut(s)	117, 369, 894
BsmI	GAATGC	1 cut(s)	243
BsnI	GGCC	4 cut(s)	177, 332, 613, 1231
Bsp120I	GGGCCC	1 cut(s)	175
Bsp1286I	GDGCHC	4 cut(s)	179, 961, 1462, 1492
Bsp143I	GATC	9 cut(s)	14, 36, 190, 591, 619, 829, 979, 1169, 1201
Bsp19I	CCATGG	1 cut(s)	339
BspACI	CCGC	4 cut(s)	21, 484, 517, 777
BspANI	GGCC	4 cut(s)	177, 332, 613, 1231
BspCNI	CTCAG	4 cut(s)	24, 283, 517, 853
BspFNI	CGCG	1 cut(s)	49
BspLI	GGNNCC	4 cut(s)	90, 177, 357, 593
BspOI	GCTAGC	1 cut(s)	935
BspPI	GGATC	3 cut(s)	586, 599, 974
BsrDI	GCAATG	2 cut(s)	512, 772
BsrI	ACTGG	1 cut(s)	689
BssECI	CCNNGG	3 cut(s)	92, 339, 350
BssMI	GATC	9 cut(s)	14, 36, 190, 591, 619, 829, 979, 1169, 1201
BssT1I	CCWWGG	3 cut(s)	92, 339, 350
Bst4CI	ACNGT	2 cut(s)	1019, 1262
BstC8I	GCNNGC	1 cut(s)	933
BstDEI	CTNAG	7 cut(s)	11, 25, 198, 291, 525, 744, 861
BstDSI	CCRYGG	1 cut(s)	339
BstEII	GGTNACC	2 cut(s)	763, 837
BstENI	CCTNNNNNAGG	1 cut(s)	711
BstF5I	GGATG	7 cut(s)	102, 526, 768, 844, 1273, 1318, 1429
BstFNI	CGCG	1 cut(s)	49
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 51
BstKTI	GATC	9 cut(s)	17, 39, 193, 594, 622, 832, 982, 1172, 1204
BstMAI	GTCTC	1 cut(s)	1475
BstMBI	GATC	9 cut(s)	14, 36, 190, 591, 619, 829, 979, 1169, 1201
BstMWI	GCNNNNNNNGC	1 cut(s)	1520
BstPAI	GACNNNNGTC	1 cut(s)	474
BstPI	GGTNACC	2 cut(s)	763, 837
BstSLI	GKGCMC	2 cut(s)	179, 1462
BstUI	CGCG	1 cut(s)	49
BstV1I	GCAGC	2 cut(s)	252, 1458
BstX2I	RGATCY	4 cut(s)	14, 190, 591, 1169
BstYI	RGATCY	4 cut(s)	14, 190, 591, 1169
BsuRI	GGCC	4 cut(s)	177, 332, 613, 1231
BtgI	CCRYGG	1 cut(s)	339
BtrI	CACGTC	1 cut(s)	1539
BtsCI	GGATG	7 cut(s)	102, 526, 768, 844, 1273, 1318, 1429
BtsI	GCAGTG	1 cut(s)	1043
BtsIMutI	CAGTG	2 cut(s)	1024, 1043
Cac8I	GCNNGC	1 cut(s)	933
CfoI	GCGC	2 cut(s)	7, 51
Cfr13I	GGNCC	5 cut(s)	175, 176, 343, 356, 612
Csp6I	GTAC	3 cut(s)	866, 1145, 1296
CspCI	CAANNNNNGTGG	2 cut(s)	931, 966
CviAII	CATG	8 cut(s)	340, 487, 578, 888, 1081, 1121, 1157, 1382
CviQI	GTAC	3 cut(s)	866, 1145, 1296
DdeI	CTNAG	7 cut(s)	11, 25, 198, 291, 525, 744, 861
DpnI	GATC	9 cut(s)	16, 38, 192, 593, 621, 831, 981, 1171, 1203
DpnII	GATC	9 cut(s)	14, 36, 190, 591, 619, 829, 979, 1169, 1201
DraI	TTTAAA	1 cut(s)	987
DriI	GACNNNNNGTC	1 cut(s)	436
Eam1105I	GACNNNNNGTC	1 cut(s)	436
Ecl136II	GAGCTC	1 cut(s)	1490
Eco130I	CCWWGG	3 cut(s)	92, 339, 350
Eco147I	AGGCCT	1 cut(s)	332
Eco24I	GRGCYC	2 cut(s)	179, 1492
Eco47I	GGWCC	2 cut(s)	343, 356
Eco53kI	GAGCTC	1 cut(s)	1490
Eco57I	CTGAAG	2 cut(s)	417, 756
Eco91I	GGTNACC	2 cut(s)	763, 837
EcoICRI	GAGCTC	1 cut(s)	1490
EcoNI	CCTNNNNNAGG	1 cut(s)	711
EcoO109I	RGGNCCY	1 cut(s)	176
EcoO65I	GGTNACC	2 cut(s)	763, 837
EcoRI	GAATTC	2 cut(s)	404, 640
EcoT14I	CCWWGG	3 cut(s)	92, 339, 350
EcoT38I	GRGCYC	2 cut(s)	179, 1492
ErhI	CCWWGG	3 cut(s)	92, 339, 350
FaeI	CATG	8 cut(s)	343, 490, 581, 891, 1084, 1124, 1160, 1385
FalI	AAGNNNNNCTT	8 cut(s)	299, 331, 580, 612, 945, 977, 1216, 1248
FaqI	GGGAC	3 cut(s)	117, 369, 894
FatI	CATG	8 cut(s)	339, 486, 577, 887, 1080, 1120, 1156, 1381
FauI	CCCGC	1 cut(s)	510
FauNDI	CATATG	1 cut(s)	251
FbaI	TGATCA	1 cut(s)	829
Fnu4HI	GCNGC	3 cut(s)	8, 241, 1472
FokI	GGATG	7 cut(s)	109, 533, 755, 831, 1280, 1305, 1436
FriOI	GRGCYC	2 cut(s)	179, 1492
Fsp4HI	GCNGC	3 cut(s)	8, 241, 1472
FspBI	CTAG	3 cut(s)	93, 932, 1475
GlaI	GCGC	2 cut(s)	6, 50
GluI	GCNGC	3 cut(s)	8, 241, 1472
GsuI	CTGGAG	1 cut(s)	1520
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	4 cut(s)	177, 332, 613, 1231
HapII	CCGG	1 cut(s)	296
HhaI	GCGC	2 cut(s)	7, 51
Hin1II	CATG	8 cut(s)	343, 490, 581, 891, 1084, 1124, 1160, 1385
Hin6I	GCGC	2 cut(s)	5, 49
HinP1I	GCGC	2 cut(s)	5, 49
HincII	GTYRAC	1 cut(s)	1432
HindII	GTYRAC	1 cut(s)	1432
HindIII	AAGCTT	2 cut(s)	738, 1390
HinfI	GANTC	2 cut(s)	490, 822
HpaII	CCGG	1 cut(s)	296
HphI	GGTGA	3 cut(s)	649, 831, 1232
Hpy166II	GTNNAC	3 cut(s)	868, 1432, 1460
Hpy188I	TCNGA	8 cut(s)	14, 292, 347, 442, 561, 670, 1528, 1543
Hpy188III	TCNNGA	4 cut(s)	372, 604, 734, 1499
Hpy8I	GTNNAC	3 cut(s)	868, 1432, 1460
HpyAV	CCTTC	5 cut(s)	91, 523, 740, 947, 1242
HpyCH4III	ACNGT	2 cut(s)	1019, 1262
HpyCH4IV	ACGT	1 cut(s)	1538
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1520
HpyF3I	CTNAG	7 cut(s)	11, 25, 198, 291, 525, 744, 861
HpySE526I	ACGT	1 cut(s)	1538
Hsp92II	CATG	8 cut(s)	343, 490, 581, 891, 1084, 1124, 1160, 1385
HspAI	GCGC	2 cut(s)	5, 49
Ksp22I	TGATCA	1 cut(s)	829
Kzo9I	GATC	9 cut(s)	14, 36, 190, 591, 619, 829, 979, 1169, 1201
LmnI	GCTCC	3 cut(s)	34, 234, 956
Lsp1109I	GCAGC	2 cut(s)	252, 1458
LweI	GCATC	7 cut(s)	300, 511, 552, 609, 1105, 1362, 1532
MaeI	CTAG	3 cut(s)	93, 932, 1475
MaeII	ACGT	1 cut(s)	1538
MaeIII	GTNAC	4 cut(s)	446, 709, 763, 837
MalI	GATC	9 cut(s)	16, 38, 192, 593, 621, 831, 981, 1171, 1203
MboI	GATC	9 cut(s)	14, 36, 190, 591, 619, 829, 979, 1169, 1201
MboII	GAAGA	5 cut(s)	185, 410, 1195, 1337, 1517
MflI	RGATCY	4 cut(s)	14, 190, 591, 1169
MhlI	GDGCHC	4 cut(s)	179, 961, 1462, 1492
MmeI	TCCRAC	1 cut(s)	370
MnlI	CCTC	8 cut(s)	55, 82, 322, 852, 856, 1170, 1173, 1495
MseI	TTAA	3 cut(s)	681, 986, 1287
MslI	CAYNNNNRTG	1 cut(s)	1415
MspI	CCGG	1 cut(s)	296
Mva1269I	GAATGC	1 cut(s)	243
MvnI	CGCG	1 cut(s)	49
MwoI	GCNNNNNNNGC	1 cut(s)	1520
NcoI	CCATGG	1 cut(s)	339
NdeI	CATATG	1 cut(s)	251
NdeII	GATC	9 cut(s)	14, 36, 190, 591, 619, 829, 979, 1169, 1201
NheI	GCTAGC	1 cut(s)	931
NlaIII	CATG	8 cut(s)	343, 490, 581, 891, 1084, 1124, 1160, 1385
NlaIV	GGNNCC	4 cut(s)	90, 177, 357, 593
NmuCI	GTSAC	2 cut(s)	446, 837
PceI	AGGCCT	1 cut(s)	332
PctI	GAATGC	1 cut(s)	243
PfeI	GAWTC	2 cut(s)	490, 822
PkrI	GCNGC	3 cut(s)	9, 242, 1473
PshAI	GACNNNNGTC	1 cut(s)	474
PsiI	TTATAA	1 cut(s)	185
Psp124BI	GAGCTC	1 cut(s)	1492
PspEI	GGTNACC	2 cut(s)	763, 837
PspN4I	GGNNCC	4 cut(s)	90, 177, 357, 593
PspOMI	GGGCCC	1 cut(s)	175
PspPI	GGNCC	5 cut(s)	175, 176, 343, 356, 612
PsuI	RGATCY	4 cut(s)	14, 190, 591, 1169
RsaI	GTAC	3 cut(s)	867, 1146, 1297
RsaNI	GTAC	3 cut(s)	866, 1145, 1296
RseI	CAYNNNNRTG	1 cut(s)	1415
SacI	GAGCTC	1 cut(s)	1492
SaqAI	TTAA	3 cut(s)	681, 986, 1287
SatI	GCNGC	3 cut(s)	8, 241, 1472
Sau3AI	GATC	9 cut(s)	14, 36, 190, 591, 619, 829, 979, 1169, 1201
Sau96I	GGNCC	5 cut(s)	175, 176, 343, 356, 612
SduI	GDGCHC	4 cut(s)	179, 961, 1462, 1492
SfaNI	GCATC	7 cut(s)	300, 511, 552, 609, 1105, 1362, 1532
SinI	GGWCC	2 cut(s)	343, 356
SmiMI	CAYNNNNRTG	1 cut(s)	1415
SmlI	CTYRAG	1 cut(s)	1403
SmoI	CTYRAG	1 cut(s)	1403
SseBI	AGGCCT	1 cut(s)	332
SsiI	CCGC	4 cut(s)	21, 484, 517, 777
SspMI	CTAG	3 cut(s)	93, 932, 1475
SstI	GAGCTC	1 cut(s)	1492
StuI	AGGCCT	1 cut(s)	332
StyI	CCWWGG	3 cut(s)	92, 339, 350
TaaI	ACNGT	2 cut(s)	1019, 1262
TaiI	ACGT	1 cut(s)	1541
TaqI	TCGA	1 cut(s)	39
TfiI	GAWTC	2 cut(s)	490, 822
Tru1I	TTAA	3 cut(s)	681, 986, 1287
Tru9I	TTAA	3 cut(s)	681, 986, 1287
TscAI	CASTG	2 cut(s)	1024, 1050
TseFI	GTSAC	2 cut(s)	446, 837
TseI	GCWGC	3 cut(s)	7, 240, 1471
Tsp45I	GTSAC	2 cut(s)	446, 837
TspGWI	ACGGA	1 cut(s)	21
TspRI	CASTG	2 cut(s)	1024, 1050
VneI	GTGCAC	1 cut(s)	1458
VpaK11BI	GGWCC	2 cut(s)	343, 356
XagI	CCTNNNNNAGG	1 cut(s)	711
XapI	RAATTY	5 cut(s)	299, 404, 640, 1363, 1447
XcmI	CCANNNNNNNNNTGG	1 cut(s)	779
XmaJI	CCTAGG	1 cut(s)	92
XspI	CTAG	3 cut(s)	93, 932, 1475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.