FvH4_6g28330

F-box associated

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
21802961 .. 21806146
3186 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g28330.t1

Sequence Viewer

Length: 1428 bp
ATGAGGAGGAAAAGAGGGAGGAAGCCAAAAGATGAAATCCAAATAGTTATTAACGACGATGAACAAATTCAACAAATTGGGGATGGTCCTTTTATAACAGATCTTCCAAGATCTGTCGTTCAAGAAATTTTATTAAAGCTCCCAATAAAGAGCATTCTCATGTGCAAAATTGTGTACAAGACTTGGCATGGTGTGATTTCGGACCCTGAATTTACTCGTATGCACTTTCATTTGAATCAAGAAGAAGCCTATCCTATGATCCGACCCTGGCATAGGCTGCGTGTGGGAAGAACCCTATACTTGGTGGAGCCTGCTGAGAACTCTGGTTTTGATTTGGAAGACCATACCGGTGACGATGGCACATTGAAGTCTATTCCCTGGCCTGTGCGAATGAGTATTACCAATTGCAAAATTCCGTTGCGCAATCCTGAGGAGGCATTCAAGTATCACAATAAGCTCGTTGATTATATGCTTAACAGGAAACGTGGTGCTAAAAAGAAACATAGACCTTGCATCAATGACATAAATCCACTCGATCACAGGTACGAGTTGGTGAATTCGTGTAACGGCTTGCTTTGCTTGGCTGAAGAACACAACGGACCTTCTGTTGTGTGCAATCCAATAACTGGCGAGTTCATACACCTACCTCATGTTTTGAAGAACGAGAGTCACAAGAAATGCATTGGTGGAGGATTTGGTTTCAGTCCGAAGACTAACAAGTATAAGGTGATAAGAGTCCTTCATGAAGGTGCAGATCATCCCATTCAGGTGGTTGATATAGAGATACACACACTAGGGACTCATTCATGGAAAGAAGTTGGTAGTTCTCCCTTCGCCGAACATATGAAATCACCCATCTATTTGAAAGGTTCTCTTTATTGGTACAGCAGTTTGGATAGCATAGCTTCTTTCGACTTGGACACTGAGCTGTTCCAGTCAGTTCCACCATTGCCTTTTCAGGTGGATTATCTTGAACGGGGCATGGGGGTTTTGGGAGAGAGTCTTTCTGTGTGTGCTACGCACGATAATCAAATCGATGTGTGGGAAGTGGAAGATCATGGTGCGCAAATGTCTTGGAAGAAAAAGGTTTATGATGATATAGATGTTGGACGAAGACAAAGCTGGCCACAGGGCTTGTATATACCATTGAAATACTTAACCGATGGAGCTCTGTTAATGTTTAAAAGGGATACTGATGCCTTGGTTTACTATCATCCAAGAAGAAATTACAGATCAATCCTTTATCTTGATCTTAAGATTAGAGGTAGGTACATAGAAGGGTTTGAAGTAATTCGTCATATTCCAAGCCTAATGTCACTCAAGGACATACAGCATGATCTAGAAGTACTGAATGTAAATTCAAGATGTGCAGAGTACAAGCTGCCGCGGGAGACTAGAGGTCTTCAATTGAAGACATTATGGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

476

Amino Acids

55.13

Weight (kDa)

7.99

Isoelectric Point (pI)

42.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 32 - 73 2.2e-06 F-box domain
FBA_1 PF07734 177 - 375 2e-23 F-box associated beta propeller domain
FBA_3 PF08268 177 - 409 2e-19 F-box associated beta propeller domain
Beta-prop_KIB1-4 PF03478 180 - 322 6.6e-08 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 95
Acc16I TGCGCA 2 cut(s) 422, 1065
AccB7I CCANNNNNTGG 1 cut(s) 626
AccII CGCG 1 cut(s) 1387
AciI CCGC 2 cut(s) 1385, 1387
AclWI GGATC 1 cut(s) 253
AcoI YGGCCR 1 cut(s) 1124
AcsI RAATTY 6 cut(s) 66, 126, 209, 411, 556, 1357
AcuI CTGAAG 1 cut(s) 606
AfaI GTAC 6 cut(s) 176, 545, 884, 1271, 1347, 1376
AfiI CCNNNNNNNGG 3 cut(s) 273, 301, 626
AflII CTTAAG 1 cut(s) 1253
AgeI ACCGGT 1 cut(s) 347
AhdI GACNNNNNGTC 1 cut(s) 1398
AjnI CCWGG 2 cut(s) 266, 377
AluBI AGCT 7 cut(s) 139, 457, 905, 928, 1122, 1169, 1381
AluI AGCT 7 cut(s) 139, 457, 905, 928, 1122, 1169, 1381
Alw21I GWGCWC 1 cut(s) 1171
Alw26I GTCTC 1 cut(s) 1385
AlwI GGATC 1 cut(s) 253
AoxI GGCC 2 cut(s) 380, 1124
ApeKI GCWGC 2 cut(s) 277, 1381
ApoI RAATTY 6 cut(s) 66, 126, 209, 411, 556, 1357
AsiGI ACCGGT 1 cut(s) 347
Asp700I GAANNNNTTC 2 cut(s) 66, 1290
AspLEI GCGC 2 cut(s) 423, 1066
AspS9I GGNCC 3 cut(s) 86, 202, 599
AsuHPI GGTGA 4 cut(s) 362, 565, 739, 843
AvaII GGWCC 3 cut(s) 86, 202, 599
AxyI CCTNAGG 1 cut(s) 429
BaeI ACNNNNGTAYC 2 cut(s) 874, 907
BalI TGGCCA 1 cut(s) 1126
BanII GRGCYC 1 cut(s) 1171
BbsI GAAGAC 5 cut(s) 345, 716, 1120, 1394, 1418
Bbv12I GWGCWC 1 cut(s) 1171
BbvI GCAGC 2 cut(s) 264, 1368
BccI CCATC 4 cut(s) 77, 350, 863, 1157
BceAI ACGGC 1 cut(s) 583
BciT130I CCWGG 2 cut(s) 268, 379
BciVI GTATCC 1 cut(s) 1183
BcoDI GTCTC 1 cut(s) 1385
BfaI CTAG 3 cut(s) 794, 1340, 1395
BfrI CTTAAG 1 cut(s) 1253
BfuI GTATCC 1 cut(s) 1183
BglII AGATCT 2 cut(s) 100, 110
BisI GCNGC 3 cut(s) 278, 1382, 1385
BlsI GCNGC 3 cut(s) 279, 1383, 1386
BmcAI AGTACT 1 cut(s) 1347
Bme1390I CCNGG 2 cut(s) 268, 379
Bme18I GGWCC 3 cut(s) 86, 202, 599
BmeRI GACNNNNNGTC 1 cut(s) 1398
BmgT120I GGNCC 3 cut(s) 86, 202, 599
BmiI GGNNCC 2 cut(s) 204, 309
BmrFI CCNGG 2 cut(s) 268, 379
BmsI GCATC 2 cut(s) 522, 1186
BpiI GAAGAC 5 cut(s) 345, 716, 1120, 1394, 1418
BpuEI CTTGAG 1 cut(s) 1304
Bsa29I ATCGAT 1 cut(s) 1035
BsaJI CCNNGG 4 cut(s) 266, 377, 1200, 1385
BsaWI WCCGGW 1 cut(s) 347
Bsc4I CCNNNNNNNGG 3 cut(s) 273, 301, 626
Bse118I RCCGGY 1 cut(s) 347
Bse1I ACTGG 2 cut(s) 631, 934
Bse21I CCTNAGG 1 cut(s) 429
Bse3DI GCAATG 1 cut(s) 947
BseBI CCWGG 2 cut(s) 268, 379
BseCI ATCGAT 1 cut(s) 1035
BseDI CCNNGG 4 cut(s) 266, 377, 1200, 1385
BseGI GGATG 3 cut(s) 88, 757, 1213
BseLI CCNNNNNNNGG 3 cut(s) 273, 301, 626
BseMI GCAATG 1 cut(s) 947
BseMII CTCAG 3 cut(s) 306, 420, 915
BseNI ACTGG 2 cut(s) 631, 934
BseRI GAGGAG 2 cut(s) 19, 446
BseXI GCAGC 2 cut(s) 264, 1368
BsgI GTGCAG 2 cut(s) 771, 1389
Bsh1236I CGCG 1 cut(s) 1387
BshFI GGCC 2 cut(s) 382, 1126
BshTI ACCGGT 1 cut(s) 347
BshVI ATCGAT 1 cut(s) 1035
BsiHKAI GWGCWC 1 cut(s) 1171
BsiSI CCGG 1 cut(s) 348
BslFI GGGAC 1 cut(s) 811
BslI CCNNNNNNNGG 3 cut(s) 273, 301, 626
BsmAI GTCTC 1 cut(s) 1385
BsmFI GGGAC 1 cut(s) 811
BsmI GAATGC 2 cut(s) 153, 437
BsnI GGCC 2 cut(s) 382, 1126
Bsp1286I GDGCHC 1 cut(s) 1171
Bsp1407I TGTACA 1 cut(s) 174
Bsp143I GATC 9 cut(s) 100, 110, 258, 535, 754, 1054, 1232, 1249, 1336
BspACI CCGC 2 cut(s) 1385, 1387
BspANI GGCC 2 cut(s) 382, 1126
BspCNI CTCAG 3 cut(s) 307, 421, 916
BspDI ATCGAT 1 cut(s) 1035
BspFNI CGCG 1 cut(s) 1387
BspHI TCATGA 1 cut(s) 742
BspLI GGNNCC 2 cut(s) 204, 309
BspPI GGATC 1 cut(s) 253
BspTI CTTAAG 1 cut(s) 1253
BsrDI GCAATG 1 cut(s) 947
BsrFI RCCGGY 1 cut(s) 347
BsrGI TGTACA 1 cut(s) 174
BsrI ACTGG 2 cut(s) 631, 934
BssAI RCCGGY 1 cut(s) 347
BssECI CCNNGG 4 cut(s) 266, 377, 1200, 1385
BssMI GATC 9 cut(s) 100, 110, 258, 535, 754, 1054, 1232, 1249, 1336
BssT1I CCWWGG 1 cut(s) 1200
Bst2UI CCWGG 2 cut(s) 268, 379
BstAFI CTTAAG 1 cut(s) 1253
BstAPI GCANNNNNTGC 1 cut(s) 277
BstAUI TGTACA 1 cut(s) 174
BstC8I GCNNGC 3 cut(s) 312, 572, 1124
BstDEI CTNAG 3 cut(s) 315, 429, 924
BstDSI CCRYGG 1 cut(s) 1385
BstENI CCTNNNNNAGG 1 cut(s) 271
BstF5I GGATG 3 cut(s) 88, 757, 1213
BstFNI CGCG 1 cut(s) 1387
BstHHI GCGC 2 cut(s) 423, 1066
BstKTI GATC 9 cut(s) 103, 113, 261, 538, 757, 1057, 1235, 1252, 1339
BstMAI GTCTC 1 cut(s) 1385
BstMBI GATC 9 cut(s) 100, 110, 258, 535, 754, 1054, 1232, 1249, 1336
BstMWI GCNNNNNNNGC 2 cut(s) 277, 576
BstNI CCWGG 2 cut(s) 268, 379
BstSCI CCNGG 2 cut(s) 266, 377
BstUI CGCG 1 cut(s) 1387
BstV1I GCAGC 2 cut(s) 264, 1368
BstV2I GAAGAC 5 cut(s) 345, 716, 1120, 1394, 1418
BstX2I RGATCY 2 cut(s) 100, 110
BstXI CCANNNNNNTGG 1 cut(s) 769
BstYI RGATCY 2 cut(s) 100, 110
Bsu15I ATCGAT 1 cut(s) 1035
Bsu36I CCTNAGG 1 cut(s) 429
BsuI GTATCC 1 cut(s) 1183
BsuRI GGCC 2 cut(s) 382, 1126
BsuTUI ATCGAT 1 cut(s) 1035
BtgI CCRYGG 1 cut(s) 1385
BtsCI GGATG 3 cut(s) 88, 757, 1213
BtsIMutI CAGTG 1 cut(s) 921
Cac8I GCNNGC 3 cut(s) 312, 572, 1124
CciI TCATGA 1 cut(s) 742
CfoI GCGC 2 cut(s) 423, 1066
Cfr10I RCCGGY 1 cut(s) 347
Cfr13I GGNCC 3 cut(s) 86, 202, 599
Cfr42I CCGCGG 1 cut(s) 1388
ClaI ATCGAT 1 cut(s) 1035
Csp6I GTAC 6 cut(s) 175, 544, 883, 1270, 1346, 1375
CspAI ACCGGT 1 cut(s) 347
CspCI CAANNNNNGTGG 2 cut(s) 1116, 1151
CviAII CATG 8 cut(s) 160, 188, 650, 743, 807, 982, 1058, 1334
CviQI GTAC 6 cut(s) 175, 544, 883, 1270, 1346, 1375
DdeI CTNAG 3 cut(s) 315, 429, 924
DpnI GATC 9 cut(s) 102, 112, 260, 537, 756, 1056, 1234, 1251, 1338
DpnII GATC 9 cut(s) 100, 110, 258, 535, 754, 1054, 1232, 1249, 1336
DraI TTTAAA 1 cut(s) 1183
DriI GACNNNNNGTC 1 cut(s) 1398
EaeI YGGCCR 1 cut(s) 1124
Eam1105I GACNNNNNGTC 1 cut(s) 1398
Ecl136II GAGCTC 1 cut(s) 1169
Eco130I CCWWGG 1 cut(s) 1200
Eco24I GRGCYC 1 cut(s) 1171
Eco47I GGWCC 3 cut(s) 86, 202, 599
Eco53kI GAGCTC 1 cut(s) 1169
Eco57I CTGAAG 1 cut(s) 606
Eco81I CCTNAGG 1 cut(s) 429
EcoICRI GAGCTC 1 cut(s) 1169
EcoNI CCTNNNNNAGG 1 cut(s) 271
EcoRI GAATTC 1 cut(s) 556
EcoRII CCWGG 2 cut(s) 266, 377
EcoT14I CCWWGG 1 cut(s) 1200
EcoT22I ATGCAT 1 cut(s) 683
EcoT38I GRGCYC 1 cut(s) 1171
ErhI CCWWGG 1 cut(s) 1200
FaeI CATG 8 cut(s) 163, 191, 653, 746, 810, 985, 1061, 1337
FalI AAGNNNNNCTT 2 cut(s) 858, 890
FaqI GGGAC 1 cut(s) 811
FatI CATG 8 cut(s) 159, 187, 649, 742, 806, 981, 1057, 1333
FauI CCCGC 1 cut(s) 1380
FauNDI CATATG 1 cut(s) 843
Fnu4HI GCNGC 3 cut(s) 278, 1382, 1385
FokI GGATG 3 cut(s) 95, 744, 1200
FriOI GRGCYC 1 cut(s) 1171
Fsp4HI GCNGC 3 cut(s) 278, 1382, 1385
FspBI CTAG 3 cut(s) 794, 1340, 1395
FspI TGCGCA 2 cut(s) 422, 1065
GlaI GCGC 2 cut(s) 422, 1065
GluI GCNGC 3 cut(s) 278, 1382, 1385
HaeIII GGCC 2 cut(s) 382, 1126
HapII CCGG 1 cut(s) 348
HhaI GCGC 2 cut(s) 423, 1066
Hin1II CATG 8 cut(s) 163, 191, 653, 746, 810, 985, 1061, 1337
Hin6I GCGC 2 cut(s) 421, 1064
HinP1I GCGC 2 cut(s) 421, 1064
HinfI GANTC 5 cut(s) 235, 667, 735, 799, 1000
HpaII CCGG 1 cut(s) 348
HphI GGTGA 4 cut(s) 362, 565, 739, 843
Hpy166II GTNNAC 2 cut(s) 175, 1207
Hpy188I TCNGA 3 cut(s) 202, 263, 708
Hpy188III TCNNGA 8 cut(s) 122, 239, 428, 743, 971, 1247, 1340, 1362
Hpy8I GTNNAC 2 cut(s) 175, 1207
Hpy99I CGWCG 1 cut(s) 59
HpyAV CCTTC 5 cut(s) 612, 740, 749, 841, 1271
HpyCH4IV ACGT 1 cut(s) 484
HpyCH4V TGCA 8 cut(s) 165, 223, 408, 513, 615, 681, 752, 1370
HpyF10VI GCNNNNNNNGC 2 cut(s) 277, 576
HpyF3I CTNAG 3 cut(s) 315, 429, 924
HpySE526I ACGT 1 cut(s) 484
Hsp92II CATG 8 cut(s) 163, 191, 653, 746, 810, 985, 1061, 1337
HspAI GCGC 2 cut(s) 421, 1064
KspI CCGCGG 1 cut(s) 1388
Kzo9I GATC 9 cut(s) 100, 110, 258, 535, 754, 1054, 1232, 1249, 1336
LmnI GCTCC 3 cut(s) 144, 307, 1166
Lsp1109I GCAGC 2 cut(s) 264, 1368
LweI GCATC 2 cut(s) 522, 1186
MaeI CTAG 3 cut(s) 794, 1340, 1395
MaeII ACGT 1 cut(s) 484
MaeIII GTNAC 4 cut(s) 350, 563, 668, 1314
MalI GATC 9 cut(s) 102, 112, 260, 537, 756, 1056, 1234, 1251, 1338
MboI GATC 9 cut(s) 100, 110, 258, 535, 754, 1054, 1232, 1249, 1336
MfeI CAATTG 2 cut(s) 403, 1406
MflI RGATCY 2 cut(s) 100, 110
MhlI GDGCHC 1 cut(s) 1171
MlsI TGGCCA 1 cut(s) 1126
MluNI TGGCCA 1 cut(s) 1126
MlyI GAGTC 4 cut(s) 676, 744, 793, 1009
MmeI TCCRAC 2 cut(s) 286, 1087
MnlI CCTC 8 cut(s) 8, 12, 424, 427, 657, 683, 1256, 1391
Mox20I TGGCCA 1 cut(s) 1126
Mph1103I ATGCAT 1 cut(s) 683
MroXI GAANNNNTTC 2 cut(s) 66, 1290
MscI TGGCCA 1 cut(s) 1126
MseI TTAA 7 cut(s) 51, 134, 474, 1157, 1175, 1182, 1254
MslI CAYNNNNRTG 5 cut(s) 158, 348, 747, 767, 1420
Msp20I TGGCCA 1 cut(s) 1126
MspA1I CMGCKG 1 cut(s) 1387
MspCI CTTAAG 1 cut(s) 1253
MspI CCGG 1 cut(s) 348
MspR9I CCNGG 2 cut(s) 268, 379
MunI CAATTG 2 cut(s) 403, 1406
Mva1269I GAATGC 2 cut(s) 153, 437
MvaI CCWGG 2 cut(s) 268, 379
MvnI CGCG 1 cut(s) 1387
MwoI GCNNNNNNNGC 2 cut(s) 277, 576
NdeI CATATG 1 cut(s) 843
NdeII GATC 9 cut(s) 100, 110, 258, 535, 754, 1054, 1232, 1249, 1336
NlaIII CATG 8 cut(s) 163, 191, 653, 746, 810, 985, 1061, 1337
NlaIV GGNNCC 2 cut(s) 204, 309
NmuCI GTSAC 3 cut(s) 350, 668, 1314
NsbI TGCGCA 2 cut(s) 422, 1065
NsiI ATGCAT 1 cut(s) 683
PagI TCATGA 1 cut(s) 742
PctI GAATGC 2 cut(s) 153, 437
PdmI GAANNNNTTC 2 cut(s) 66, 1290
PfeI GAWTC 1 cut(s) 235
PflMI CCANNNNNTGG 1 cut(s) 626
PinAI ACCGGT 1 cut(s) 347
PkrI GCNGC 3 cut(s) 279, 1383, 1386
PleI GAGTC 4 cut(s) 675, 743, 793, 1008
PpsI GAGTC 4 cut(s) 675, 743, 793, 1008
PsiI TTATAA 1 cut(s) 95
Psp124BI GAGCTC 1 cut(s) 1171
Psp6I CCWGG 2 cut(s) 266, 377
PspGI CCWGG 2 cut(s) 266, 377
PspN4I GGNNCC 2 cut(s) 204, 309
PspPI GGNCC 3 cut(s) 86, 202, 599
PsuI RGATCY 2 cut(s) 100, 110
RsaI GTAC 6 cut(s) 176, 545, 884, 1271, 1347, 1376
RsaNI GTAC 6 cut(s) 175, 544, 883, 1270, 1346, 1375
RseI CAYNNNNRTG 5 cut(s) 158, 348, 747, 767, 1420
SacI GAGCTC 1 cut(s) 1171
SacII CCGCGG 1 cut(s) 1388
SaqAI TTAA 7 cut(s) 51, 134, 474, 1157, 1175, 1182, 1254
SatI GCNGC 3 cut(s) 278, 1382, 1385
Sau3AI GATC 9 cut(s) 100, 110, 258, 535, 754, 1054, 1232, 1249, 1336
Sau96I GGNCC 3 cut(s) 86, 202, 599
ScaI AGTACT 1 cut(s) 1347
SchI GAGTC 4 cut(s) 676, 744, 793, 1009
ScrFI CCNGG 2 cut(s) 268, 379
SduI GDGCHC 1 cut(s) 1171
SfaNI GCATC 2 cut(s) 522, 1186
Sfr303I CCGCGG 1 cut(s) 1388
SgrBI CCGCGG 1 cut(s) 1388
SinI GGWCC 3 cut(s) 86, 202, 599
SmiMI CAYNNNNRTG 5 cut(s) 158, 348, 747, 767, 1420
SmlI CTYRAG 2 cut(s) 1253, 1319
SmoI CTYRAG 2 cut(s) 1253, 1319
SsiI CCGC 2 cut(s) 1385, 1387
SspMI CTAG 3 cut(s) 794, 1340, 1395
SstI GAGCTC 1 cut(s) 1171
StyD4I CCNGG 2 cut(s) 266, 377
StyI CCWWGG 1 cut(s) 1200
TaiI ACGT 1 cut(s) 487
TaqI TCGA 3 cut(s) 534, 912, 1035
TatI WGTACW 3 cut(s) 174, 1345, 1374
TauI GCSGC 1 cut(s) 1387
TfiI GAWTC 1 cut(s) 235
Tru1I TTAA 7 cut(s) 51, 134, 474, 1157, 1175, 1182, 1254
Tru9I TTAA 7 cut(s) 51, 134, 474, 1157, 1175, 1182, 1254
TscAI CASTG 1 cut(s) 928
TseFI GTSAC 3 cut(s) 350, 668, 1314
TseI GCWGC 2 cut(s) 277, 1381
Tsp45I GTSAC 3 cut(s) 350, 668, 1314
TspDTI ATGAA 8 cut(s) 48, 75, 218, 625, 731, 759, 795, 860
TspGWI ACGGA 2 cut(s) 405, 612
TspRI CASTG 1 cut(s) 928
Van91I CCANNNNNTGG 1 cut(s) 626
Vha464I CTTAAG 1 cut(s) 1253
VpaK11BI GGWCC 3 cut(s) 86, 202, 599
XagI CCTNNNNNAGG 1 cut(s) 271
XapI RAATTY 6 cut(s) 66, 126, 209, 411, 556, 1357
XbaI TCTAGA 1 cut(s) 1339
XmnI GAANNNNTTC 2 cut(s) 66, 1290
XspI CTAG 3 cut(s) 794, 1340, 1395
ZrmI AGTACT 1 cut(s) 1347
Zsp2I ATGCAT 1 cut(s) 683
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.