F-box associated
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g27870 FvH4_6g28330 |
| malus_domestica | MD01G1181800.v1.1 MD17G1263300.v1.1 |
| prunus_persica | Prupe.3G111700_v2.0.a1 Prupe.3G112000_v2.0.a1 Prupe.3G112200_v2.0.a1 Prupe.3G112200_v2.0.a1 Prupe.3G112400_v2.0.a1 Prupe.3G112400_v2.0.a1 |
| pyrus_communis | pycom17g26350 |
| rosa_chinensis | RchiOBHm_Chr2g0131131 |
| rosa_laevigata | RLG00000019173 RLG00000019176 |
| rosa_multiflora | Rmu_sc0003629.1_g000070 |
| rosa_roxburghii | Rroxscaffold_2G00113130 |
| rosa_rugosa | Rorug02G0327300 |
| rosa_samantha | Rh2AG347600 Rh2AG348000 Rh2BG355200 Rh2BG355300 Rh2CG333800 Rh2CG333900 Rh2CG334000 Rh2CG335100 Rh2DG373000 Rh2DG373300 Rh2DG374100 |
| rosa_wichuraiana | Rw2G028230 Rw2G028250 Rw2G028280 Rw2G028310 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 95 |
| Acc16I | TGCGCA | 2 cut(s) | 422, 1065 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 626 |
| AccII | CGCG | 1 cut(s) | 1387 |
| AciI | CCGC | 2 cut(s) | 1385, 1387 |
| AclWI | GGATC | 1 cut(s) | 253 |
| AcoI | YGGCCR | 1 cut(s) | 1124 |
| AcsI | RAATTY | 6 cut(s) | 66, 126, 209, 411, 556, 1357 |
| AcuI | CTGAAG | 1 cut(s) | 606 |
| AfaI | GTAC | 6 cut(s) | 176, 545, 884, 1271, 1347, 1376 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 273, 301, 626 |
| AflII | CTTAAG | 1 cut(s) | 1253 |
| AgeI | ACCGGT | 1 cut(s) | 347 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1398 |
| AjnI | CCWGG | 2 cut(s) | 266, 377 |
| AluBI | AGCT | 7 cut(s) | 139, 457, 905, 928, 1122, 1169, 1381 |
| AluI | AGCT | 7 cut(s) | 139, 457, 905, 928, 1122, 1169, 1381 |
| Alw21I | GWGCWC | 1 cut(s) | 1171 |
| Alw26I | GTCTC | 1 cut(s) | 1385 |
| AlwI | GGATC | 1 cut(s) | 253 |
| AoxI | GGCC | 2 cut(s) | 380, 1124 |
| ApeKI | GCWGC | 2 cut(s) | 277, 1381 |
| ApoI | RAATTY | 6 cut(s) | 66, 126, 209, 411, 556, 1357 |
| AsiGI | ACCGGT | 1 cut(s) | 347 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 66, 1290 |
| AspLEI | GCGC | 2 cut(s) | 423, 1066 |
| AspS9I | GGNCC | 3 cut(s) | 86, 202, 599 |
| AsuHPI | GGTGA | 4 cut(s) | 362, 565, 739, 843 |
| AvaII | GGWCC | 3 cut(s) | 86, 202, 599 |
| AxyI | CCTNAGG | 1 cut(s) | 429 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 874, 907 |
| BalI | TGGCCA | 1 cut(s) | 1126 |
| BanII | GRGCYC | 1 cut(s) | 1171 |
| BbsI | GAAGAC | 5 cut(s) | 345, 716, 1120, 1394, 1418 |
| Bbv12I | GWGCWC | 1 cut(s) | 1171 |
| BbvI | GCAGC | 2 cut(s) | 264, 1368 |
| BccI | CCATC | 4 cut(s) | 77, 350, 863, 1157 |
| BceAI | ACGGC | 1 cut(s) | 583 |
| BciT130I | CCWGG | 2 cut(s) | 268, 379 |
| BciVI | GTATCC | 1 cut(s) | 1183 |
| BcoDI | GTCTC | 1 cut(s) | 1385 |
| BfaI | CTAG | 3 cut(s) | 794, 1340, 1395 |
| BfrI | CTTAAG | 1 cut(s) | 1253 |
| BfuI | GTATCC | 1 cut(s) | 1183 |
| BglII | AGATCT | 2 cut(s) | 100, 110 |
| BisI | GCNGC | 3 cut(s) | 278, 1382, 1385 |
| BlsI | GCNGC | 3 cut(s) | 279, 1383, 1386 |
| BmcAI | AGTACT | 1 cut(s) | 1347 |
| Bme1390I | CCNGG | 2 cut(s) | 268, 379 |
| Bme18I | GGWCC | 3 cut(s) | 86, 202, 599 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1398 |
| BmgT120I | GGNCC | 3 cut(s) | 86, 202, 599 |
| BmiI | GGNNCC | 2 cut(s) | 204, 309 |
| BmrFI | CCNGG | 2 cut(s) | 268, 379 |
| BmsI | GCATC | 2 cut(s) | 522, 1186 |
| BpiI | GAAGAC | 5 cut(s) | 345, 716, 1120, 1394, 1418 |
| BpuEI | CTTGAG | 1 cut(s) | 1304 |
| Bsa29I | ATCGAT | 1 cut(s) | 1035 |
| BsaJI | CCNNGG | 4 cut(s) | 266, 377, 1200, 1385 |
| BsaWI | WCCGGW | 1 cut(s) | 347 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 273, 301, 626 |
| Bse118I | RCCGGY | 1 cut(s) | 347 |
| Bse1I | ACTGG | 2 cut(s) | 631, 934 |
| Bse21I | CCTNAGG | 1 cut(s) | 429 |
| Bse3DI | GCAATG | 1 cut(s) | 947 |
| BseBI | CCWGG | 2 cut(s) | 268, 379 |
| BseCI | ATCGAT | 1 cut(s) | 1035 |
| BseDI | CCNNGG | 4 cut(s) | 266, 377, 1200, 1385 |
| BseGI | GGATG | 3 cut(s) | 88, 757, 1213 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 273, 301, 626 |
| BseMI | GCAATG | 1 cut(s) | 947 |
| BseMII | CTCAG | 3 cut(s) | 306, 420, 915 |
| BseNI | ACTGG | 2 cut(s) | 631, 934 |
| BseRI | GAGGAG | 2 cut(s) | 19, 446 |
| BseXI | GCAGC | 2 cut(s) | 264, 1368 |
| BsgI | GTGCAG | 2 cut(s) | 771, 1389 |
| Bsh1236I | CGCG | 1 cut(s) | 1387 |
| BshFI | GGCC | 2 cut(s) | 382, 1126 |
| BshTI | ACCGGT | 1 cut(s) | 347 |
| BshVI | ATCGAT | 1 cut(s) | 1035 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1171 |
| BsiSI | CCGG | 1 cut(s) | 348 |
| BslFI | GGGAC | 1 cut(s) | 811 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 273, 301, 626 |
| BsmAI | GTCTC | 1 cut(s) | 1385 |
| BsmFI | GGGAC | 1 cut(s) | 811 |
| BsmI | GAATGC | 2 cut(s) | 153, 437 |
| BsnI | GGCC | 2 cut(s) | 382, 1126 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1171 |
| Bsp1407I | TGTACA | 1 cut(s) | 174 |
| Bsp143I | GATC | 9 cut(s) | 100, 110, 258, 535, 754, 1054, 1232, 1249, 1336 |
| BspACI | CCGC | 2 cut(s) | 1385, 1387 |
| BspANI | GGCC | 2 cut(s) | 382, 1126 |
| BspCNI | CTCAG | 3 cut(s) | 307, 421, 916 |
| BspDI | ATCGAT | 1 cut(s) | 1035 |
| BspFNI | CGCG | 1 cut(s) | 1387 |
| BspHI | TCATGA | 1 cut(s) | 742 |
| BspLI | GGNNCC | 2 cut(s) | 204, 309 |
| BspPI | GGATC | 1 cut(s) | 253 |
| BspTI | CTTAAG | 1 cut(s) | 1253 |
| BsrDI | GCAATG | 1 cut(s) | 947 |
| BsrFI | RCCGGY | 1 cut(s) | 347 |
| BsrGI | TGTACA | 1 cut(s) | 174 |
| BsrI | ACTGG | 2 cut(s) | 631, 934 |
| BssAI | RCCGGY | 1 cut(s) | 347 |
| BssECI | CCNNGG | 4 cut(s) | 266, 377, 1200, 1385 |
| BssMI | GATC | 9 cut(s) | 100, 110, 258, 535, 754, 1054, 1232, 1249, 1336 |
| BssT1I | CCWWGG | 1 cut(s) | 1200 |
| Bst2UI | CCWGG | 2 cut(s) | 268, 379 |
| BstAFI | CTTAAG | 1 cut(s) | 1253 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 277 |
| BstAUI | TGTACA | 1 cut(s) | 174 |
| BstC8I | GCNNGC | 3 cut(s) | 312, 572, 1124 |
| BstDEI | CTNAG | 3 cut(s) | 315, 429, 924 |
| BstDSI | CCRYGG | 1 cut(s) | 1385 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 271 |
| BstF5I | GGATG | 3 cut(s) | 88, 757, 1213 |
| BstFNI | CGCG | 1 cut(s) | 1387 |
| BstHHI | GCGC | 2 cut(s) | 423, 1066 |
| BstKTI | GATC | 9 cut(s) | 103, 113, 261, 538, 757, 1057, 1235, 1252, 1339 |
| BstMAI | GTCTC | 1 cut(s) | 1385 |
| BstMBI | GATC | 9 cut(s) | 100, 110, 258, 535, 754, 1054, 1232, 1249, 1336 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 277, 576 |
| BstNI | CCWGG | 2 cut(s) | 268, 379 |
| BstSCI | CCNGG | 2 cut(s) | 266, 377 |
| BstUI | CGCG | 1 cut(s) | 1387 |
| BstV1I | GCAGC | 2 cut(s) | 264, 1368 |
| BstV2I | GAAGAC | 5 cut(s) | 345, 716, 1120, 1394, 1418 |
| BstX2I | RGATCY | 2 cut(s) | 100, 110 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 769 |
| BstYI | RGATCY | 2 cut(s) | 100, 110 |
| Bsu15I | ATCGAT | 1 cut(s) | 1035 |
| Bsu36I | CCTNAGG | 1 cut(s) | 429 |
| BsuI | GTATCC | 1 cut(s) | 1183 |
| BsuRI | GGCC | 2 cut(s) | 382, 1126 |
| BsuTUI | ATCGAT | 1 cut(s) | 1035 |
| BtgI | CCRYGG | 1 cut(s) | 1385 |
| BtsCI | GGATG | 3 cut(s) | 88, 757, 1213 |
| BtsIMutI | CAGTG | 1 cut(s) | 921 |
| Cac8I | GCNNGC | 3 cut(s) | 312, 572, 1124 |
| CciI | TCATGA | 1 cut(s) | 742 |
| CfoI | GCGC | 2 cut(s) | 423, 1066 |
| Cfr10I | RCCGGY | 1 cut(s) | 347 |
| Cfr13I | GGNCC | 3 cut(s) | 86, 202, 599 |
| Cfr42I | CCGCGG | 1 cut(s) | 1388 |
| ClaI | ATCGAT | 1 cut(s) | 1035 |
| Csp6I | GTAC | 6 cut(s) | 175, 544, 883, 1270, 1346, 1375 |
| CspAI | ACCGGT | 1 cut(s) | 347 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1116, 1151 |
| CviAII | CATG | 8 cut(s) | 160, 188, 650, 743, 807, 982, 1058, 1334 |
| CviQI | GTAC | 6 cut(s) | 175, 544, 883, 1270, 1346, 1375 |
| DdeI | CTNAG | 3 cut(s) | 315, 429, 924 |
| DpnI | GATC | 9 cut(s) | 102, 112, 260, 537, 756, 1056, 1234, 1251, 1338 |
| DpnII | GATC | 9 cut(s) | 100, 110, 258, 535, 754, 1054, 1232, 1249, 1336 |
| DraI | TTTAAA | 1 cut(s) | 1183 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1398 |
| EaeI | YGGCCR | 1 cut(s) | 1124 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1398 |
| Ecl136II | GAGCTC | 1 cut(s) | 1169 |
| Eco130I | CCWWGG | 1 cut(s) | 1200 |
| Eco24I | GRGCYC | 1 cut(s) | 1171 |
| Eco47I | GGWCC | 3 cut(s) | 86, 202, 599 |
| Eco53kI | GAGCTC | 1 cut(s) | 1169 |
| Eco57I | CTGAAG | 1 cut(s) | 606 |
| Eco81I | CCTNAGG | 1 cut(s) | 429 |
| EcoICRI | GAGCTC | 1 cut(s) | 1169 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 271 |
| EcoRI | GAATTC | 1 cut(s) | 556 |
| EcoRII | CCWGG | 2 cut(s) | 266, 377 |
| EcoT14I | CCWWGG | 1 cut(s) | 1200 |
| EcoT22I | ATGCAT | 1 cut(s) | 683 |
| EcoT38I | GRGCYC | 1 cut(s) | 1171 |
| ErhI | CCWWGG | 1 cut(s) | 1200 |
| FaeI | CATG | 8 cut(s) | 163, 191, 653, 746, 810, 985, 1061, 1337 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 858, 890 |
| FaqI | GGGAC | 1 cut(s) | 811 |
| FatI | CATG | 8 cut(s) | 159, 187, 649, 742, 806, 981, 1057, 1333 |
| FauI | CCCGC | 1 cut(s) | 1380 |
| FauNDI | CATATG | 1 cut(s) | 843 |
| Fnu4HI | GCNGC | 3 cut(s) | 278, 1382, 1385 |
| FokI | GGATG | 3 cut(s) | 95, 744, 1200 |
| FriOI | GRGCYC | 1 cut(s) | 1171 |
| Fsp4HI | GCNGC | 3 cut(s) | 278, 1382, 1385 |
| FspBI | CTAG | 3 cut(s) | 794, 1340, 1395 |
| FspI | TGCGCA | 2 cut(s) | 422, 1065 |
| GlaI | GCGC | 2 cut(s) | 422, 1065 |
| GluI | GCNGC | 3 cut(s) | 278, 1382, 1385 |
| HaeIII | GGCC | 2 cut(s) | 382, 1126 |
| HapII | CCGG | 1 cut(s) | 348 |
| HhaI | GCGC | 2 cut(s) | 423, 1066 |
| Hin1II | CATG | 8 cut(s) | 163, 191, 653, 746, 810, 985, 1061, 1337 |
| Hin6I | GCGC | 2 cut(s) | 421, 1064 |
| HinP1I | GCGC | 2 cut(s) | 421, 1064 |
| HinfI | GANTC | 5 cut(s) | 235, 667, 735, 799, 1000 |
| HpaII | CCGG | 1 cut(s) | 348 |
| HphI | GGTGA | 4 cut(s) | 362, 565, 739, 843 |
| Hpy166II | GTNNAC | 2 cut(s) | 175, 1207 |
| Hpy188I | TCNGA | 3 cut(s) | 202, 263, 708 |
| Hpy188III | TCNNGA | 8 cut(s) | 122, 239, 428, 743, 971, 1247, 1340, 1362 |
| Hpy8I | GTNNAC | 2 cut(s) | 175, 1207 |
| Hpy99I | CGWCG | 1 cut(s) | 59 |
| HpyAV | CCTTC | 5 cut(s) | 612, 740, 749, 841, 1271 |
| HpyCH4IV | ACGT | 1 cut(s) | 484 |
| HpyCH4V | TGCA | 8 cut(s) | 165, 223, 408, 513, 615, 681, 752, 1370 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 277, 576 |
| HpyF3I | CTNAG | 3 cut(s) | 315, 429, 924 |
| HpySE526I | ACGT | 1 cut(s) | 484 |
| Hsp92II | CATG | 8 cut(s) | 163, 191, 653, 746, 810, 985, 1061, 1337 |
| HspAI | GCGC | 2 cut(s) | 421, 1064 |
| KspI | CCGCGG | 1 cut(s) | 1388 |
| Kzo9I | GATC | 9 cut(s) | 100, 110, 258, 535, 754, 1054, 1232, 1249, 1336 |
| LmnI | GCTCC | 3 cut(s) | 144, 307, 1166 |
| Lsp1109I | GCAGC | 2 cut(s) | 264, 1368 |
| LweI | GCATC | 2 cut(s) | 522, 1186 |
| MaeI | CTAG | 3 cut(s) | 794, 1340, 1395 |
| MaeII | ACGT | 1 cut(s) | 484 |
| MaeIII | GTNAC | 4 cut(s) | 350, 563, 668, 1314 |
| MalI | GATC | 9 cut(s) | 102, 112, 260, 537, 756, 1056, 1234, 1251, 1338 |
| MboI | GATC | 9 cut(s) | 100, 110, 258, 535, 754, 1054, 1232, 1249, 1336 |
| MfeI | CAATTG | 2 cut(s) | 403, 1406 |
| MflI | RGATCY | 2 cut(s) | 100, 110 |
| MhlI | GDGCHC | 1 cut(s) | 1171 |
| MlsI | TGGCCA | 1 cut(s) | 1126 |
| MluNI | TGGCCA | 1 cut(s) | 1126 |
| MlyI | GAGTC | 4 cut(s) | 676, 744, 793, 1009 |
| MmeI | TCCRAC | 2 cut(s) | 286, 1087 |
| MnlI | CCTC | 8 cut(s) | 8, 12, 424, 427, 657, 683, 1256, 1391 |
| Mox20I | TGGCCA | 1 cut(s) | 1126 |
| Mph1103I | ATGCAT | 1 cut(s) | 683 |
| MroXI | GAANNNNTTC | 2 cut(s) | 66, 1290 |
| MscI | TGGCCA | 1 cut(s) | 1126 |
| MseI | TTAA | 7 cut(s) | 51, 134, 474, 1157, 1175, 1182, 1254 |
| MslI | CAYNNNNRTG | 5 cut(s) | 158, 348, 747, 767, 1420 |
| Msp20I | TGGCCA | 1 cut(s) | 1126 |
| MspA1I | CMGCKG | 1 cut(s) | 1387 |
| MspCI | CTTAAG | 1 cut(s) | 1253 |
| MspI | CCGG | 1 cut(s) | 348 |
| MspR9I | CCNGG | 2 cut(s) | 268, 379 |
| MunI | CAATTG | 2 cut(s) | 403, 1406 |
| Mva1269I | GAATGC | 2 cut(s) | 153, 437 |
| MvaI | CCWGG | 2 cut(s) | 268, 379 |
| MvnI | CGCG | 1 cut(s) | 1387 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 277, 576 |
| NdeI | CATATG | 1 cut(s) | 843 |
| NdeII | GATC | 9 cut(s) | 100, 110, 258, 535, 754, 1054, 1232, 1249, 1336 |
| NlaIII | CATG | 8 cut(s) | 163, 191, 653, 746, 810, 985, 1061, 1337 |
| NlaIV | GGNNCC | 2 cut(s) | 204, 309 |
| NmuCI | GTSAC | 3 cut(s) | 350, 668, 1314 |
| NsbI | TGCGCA | 2 cut(s) | 422, 1065 |
| NsiI | ATGCAT | 1 cut(s) | 683 |
| PagI | TCATGA | 1 cut(s) | 742 |
| PctI | GAATGC | 2 cut(s) | 153, 437 |
| PdmI | GAANNNNTTC | 2 cut(s) | 66, 1290 |
| PfeI | GAWTC | 1 cut(s) | 235 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 626 |
| PinAI | ACCGGT | 1 cut(s) | 347 |
| PkrI | GCNGC | 3 cut(s) | 279, 1383, 1386 |
| PleI | GAGTC | 4 cut(s) | 675, 743, 793, 1008 |
| PpsI | GAGTC | 4 cut(s) | 675, 743, 793, 1008 |
| PsiI | TTATAA | 1 cut(s) | 95 |
| Psp124BI | GAGCTC | 1 cut(s) | 1171 |
| Psp6I | CCWGG | 2 cut(s) | 266, 377 |
| PspGI | CCWGG | 2 cut(s) | 266, 377 |
| PspN4I | GGNNCC | 2 cut(s) | 204, 309 |
| PspPI | GGNCC | 3 cut(s) | 86, 202, 599 |
| PsuI | RGATCY | 2 cut(s) | 100, 110 |
| RsaI | GTAC | 6 cut(s) | 176, 545, 884, 1271, 1347, 1376 |
| RsaNI | GTAC | 6 cut(s) | 175, 544, 883, 1270, 1346, 1375 |
| RseI | CAYNNNNRTG | 5 cut(s) | 158, 348, 747, 767, 1420 |
| SacI | GAGCTC | 1 cut(s) | 1171 |
| SacII | CCGCGG | 1 cut(s) | 1388 |
| SaqAI | TTAA | 7 cut(s) | 51, 134, 474, 1157, 1175, 1182, 1254 |
| SatI | GCNGC | 3 cut(s) | 278, 1382, 1385 |
| Sau3AI | GATC | 9 cut(s) | 100, 110, 258, 535, 754, 1054, 1232, 1249, 1336 |
| Sau96I | GGNCC | 3 cut(s) | 86, 202, 599 |
| ScaI | AGTACT | 1 cut(s) | 1347 |
| SchI | GAGTC | 4 cut(s) | 676, 744, 793, 1009 |
| ScrFI | CCNGG | 2 cut(s) | 268, 379 |
| SduI | GDGCHC | 1 cut(s) | 1171 |
| SfaNI | GCATC | 2 cut(s) | 522, 1186 |
| Sfr303I | CCGCGG | 1 cut(s) | 1388 |
| SgrBI | CCGCGG | 1 cut(s) | 1388 |
| SinI | GGWCC | 3 cut(s) | 86, 202, 599 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 158, 348, 747, 767, 1420 |
| SmlI | CTYRAG | 2 cut(s) | 1253, 1319 |
| SmoI | CTYRAG | 2 cut(s) | 1253, 1319 |
| SsiI | CCGC | 2 cut(s) | 1385, 1387 |
| SspMI | CTAG | 3 cut(s) | 794, 1340, 1395 |
| SstI | GAGCTC | 1 cut(s) | 1171 |
| StyD4I | CCNGG | 2 cut(s) | 266, 377 |
| StyI | CCWWGG | 1 cut(s) | 1200 |
| TaiI | ACGT | 1 cut(s) | 487 |
| TaqI | TCGA | 3 cut(s) | 534, 912, 1035 |
| TatI | WGTACW | 3 cut(s) | 174, 1345, 1374 |
| TauI | GCSGC | 1 cut(s) | 1387 |
| TfiI | GAWTC | 1 cut(s) | 235 |
| Tru1I | TTAA | 7 cut(s) | 51, 134, 474, 1157, 1175, 1182, 1254 |
| Tru9I | TTAA | 7 cut(s) | 51, 134, 474, 1157, 1175, 1182, 1254 |
| TscAI | CASTG | 1 cut(s) | 928 |
| TseFI | GTSAC | 3 cut(s) | 350, 668, 1314 |
| TseI | GCWGC | 2 cut(s) | 277, 1381 |
| Tsp45I | GTSAC | 3 cut(s) | 350, 668, 1314 |
| TspDTI | ATGAA | 8 cut(s) | 48, 75, 218, 625, 731, 759, 795, 860 |
| TspGWI | ACGGA | 2 cut(s) | 405, 612 |
| TspRI | CASTG | 1 cut(s) | 928 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 626 |
| Vha464I | CTTAAG | 1 cut(s) | 1253 |
| VpaK11BI | GGWCC | 3 cut(s) | 86, 202, 599 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 271 |
| XapI | RAATTY | 6 cut(s) | 66, 126, 209, 411, 556, 1357 |
| XbaI | TCTAGA | 1 cut(s) | 1339 |
| XmnI | GAANNNNTTC | 2 cut(s) | 66, 1290 |
| XspI | CTAG | 3 cut(s) | 794, 1340, 1395 |
| ZrmI | AGTACT | 1 cut(s) | 1347 |
| Zsp2I | ATGCAT | 1 cut(s) | 683 |