Rh2AG347600

F-box associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0004545
Physical Location & Seq
Reverse (-)
51095811 .. 51100151
4341 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG347600.1

Sequence Viewer

Length: 1581 bp
ATGCTTAGCTCTCACAGTACTGGGAATGCTCTCTCTAAGGGAAATTGGGTTAAGTGGGTCAATCCCCAGCGATCTTGTAGCATTCAGCCTCAACGTTGTGTTCCTAGGATAGCTATGAAAAGGAAAAGGAAGTCAATAACTTATCCCACCAAAGTAGGCAACAAAGATGAACACATTGAACAAATGGGCCCTGTTATAACAGATCTTCCAAAGTTTATTTGTCAAATCATTCTACTAAAGCTCCCAACACGCAGCATTCTCATATGCAAATGTGTATGCAAGACTTGGCGTGTGCTAATTTCTGACCCAGAATTTGCCAAGATGCACTTTGCACAAGCAGAGGCCTATCCCATGGTCCAACCTTGGGGACCAACACGGGTGTCAAGAACCCTTTACTTGGTTGAACCTGAAGATGACTTCAGTTTGGCTATAAAGGACAAGGACTATTTGTCCGATTGTGACTATGGCTCATTGAAGTTTGACAAGTGTCATTTCCGCATGAATCTTGCCAAATATAAATTACCATTGCGGGATGCTGAGAAGGTAATGAATAATGACGATAATGTCAATCTGATGCGCAATAGGAAACATGGCAGTAAAAGGATGCCTTGCATCAAGATTAGGCCCAACGATCACAAATACAATGTGGTGAATTTGTGCAATGGCTTCCTTTGTTTGTCTGAACCAATTTTTAATGACCCAGTTGTTGTCTGCAACCCTGTAACAGGCGAGTTTATGCACCTTCCTGAAGCTTCTAAGCAGGAGAACCAAAAGGTTACCATCCACTGCGGAATTGGTTTCAGTCCAAAAGCTAACAGATATAAGGTGGTGCGAATCTTTGATAAAGGGTTACCTCATCCTATTACAATGGCTGAGGTACACACTCTTGGGTCAAGTTCATGGAAACTCATTGGTAGTTGTCCCTGCTCATCATATAACCAGCTAGCGTTCCCCACCTATATTGAAGGAGCACTTTATTGGTTTTACTATGATCCTTTAAAATATGTCATACTTTCATTTGACTTGGACAGTGAGAACTTCCAATCACTTCCACCACTGCCTTTTCAACGAGAGCAATATCGTAATGTGAGCATGGGAGTTTTGGGAAATTGCCTTTGTGTCTGTGATGCTCATGGTATTCGTATCAATTTGTGGGTACTGAAAAATCATGGTGCAAAAAGATCTTGGAGGAGGAAGATTTCTATTCAAACAGATCATTTTGGGTTTGATGGTGAAAGGTGGCCTTCTGGCTTATATAAACCAATGAAATACTGTAAGGATGGGGGCTTGTTGATGTTTAACTATCGTACTAATGCGTTGATTTACCATCACCCAAAAACCCACAGATTTATTTATCTCAAGCTTCGTGGGATCAAGTCAAATTTTTCAGCTATCAGTCATGTTCCAAGCTTTATTTCACTCAAGGACATTTTGGTGGGGGATGATGTCAACATACTGAATATAAATTCAAGGTGTGCACAGATGAAGCTGCTAGGAGAGACAAGAGCTCTTTTTCTGGAGGAAGAAATTGCAGATTTAGCATCAGACTTTTTCACGTCTAATAGTAGCGATGAAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

526

Amino Acids

60.4

Weight (kDa)

9.1

Isoelectric Point (pI)

40.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 66 - 105 1.2e-06 F-box domain
F-box-like PF12937 66 - 105 2.2e-06 F-box-like
FBA_1 PF07734 208 - 403 4.6e-24 F-box associated beta propeller domain
FBA_3 PF08268 209 - 404 1.6e-22 F-box associated beta propeller domain
Beta-prop_KIB1-4 PF03478 212 - 398 4e-06 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 197
AasI GACNNNNNNGTC 1 cut(s) 563
Acc16I TGCGCA 1 cut(s) 578
AciI CCGC 3 cut(s) 496, 529, 789
AclI AACGTT 1 cut(s) 94
AclWI GGATC 2 cut(s) 986, 1379
AcsI RAATTY 4 cut(s) 311, 652, 1381, 1465
AcuI CTGAAG 3 cut(s) 403, 429, 768
AfaI GTAC 4 cut(s) 19, 879, 1158, 1309
AfiI CCNNNNNNNGG 3 cut(s) 364, 397, 725
AgsI TTSAA 7 cut(s) 179, 404, 475, 965, 1067, 1208, 1470
AhdI GACNNNNNGTC 1 cut(s) 448
AjiI CACGTC 1 cut(s) 1557
AjuI GAANNNNNNNTTGG 2 cut(s) 1399, 1431
Alw21I GWGCWC 3 cut(s) 973, 1480, 1510
Alw26I GTCTC 1 cut(s) 1493
Alw44I GTGCAC 1 cut(s) 1476
AlwI GGATC 2 cut(s) 986, 1379
AoxI GGCC 4 cut(s) 187, 342, 623, 1241
ApaI GGGCCC 1 cut(s) 191
ApaLI GTGCAC 1 cut(s) 1476
ApeKI GCWGC 2 cut(s) 252, 1489
ApoI RAATTY 4 cut(s) 311, 652, 1381, 1465
ArsI GACNNNNNNTTYG 2 cut(s) 296, 328
AspA2I CCTAGG 1 cut(s) 104
AspLEI GCGC 1 cut(s) 579
AspS9I GGNCC 5 cut(s) 187, 188, 355, 368, 624
AsuHPI GGTGA 3 cut(s) 661, 1244, 1322
AsuNHI GCTAGC 1 cut(s) 943
AvaII GGWCC 2 cut(s) 355, 368
AvrII CCTAGG 1 cut(s) 104
BaeGI GKGCMC 2 cut(s) 191, 1480
BanII GRGCYC 2 cut(s) 191, 1510
Bbv12I GWGCWC 3 cut(s) 973, 1480, 1510
BbvCI CCTCAGC 1 cut(s) 873
BbvI GCAGC 2 cut(s) 264, 1476
BccI CCATC 4 cut(s) 788, 1223, 1274, 1335
BcoDI GTCTC 1 cut(s) 1493
BfaI CTAG 3 cut(s) 105, 944, 1493
BglII AGATCT 2 cut(s) 202, 1181
BisI GCNGC 2 cut(s) 253, 1490
BlnI CCTAGG 1 cut(s) 104
BlpI GCTNAGC 1 cut(s) 5
BlsI GCNGC 2 cut(s) 254, 1491
BmcAI AGTACT 1 cut(s) 19
Bme18I GGWCC 2 cut(s) 355, 368
BmeRI GACNNNNNGTC 1 cut(s) 448
BmgBI CACGTC 1 cut(s) 1557
BmgT120I GGNCC 5 cut(s) 187, 188, 355, 368, 624
BmiI GGNNCC 2 cut(s) 189, 369
BmrI ACTGGG 2 cut(s) 30, 695
BmsI GCATC 7 cut(s) 312, 523, 564, 594, 621, 1117, 1550
BmtI GCTAGC 1 cut(s) 947
BmuI ACTGGG 2 cut(s) 30, 695
BoxI GACNNNNGTC 1 cut(s) 486
BpmI CTGGAG 1 cut(s) 1538
Bpu10I CCTNAGC 1 cut(s) 873
Bpu1102I GCTNAGC 1 cut(s) 5
BpuEI CTTGAG 2 cut(s) 1343, 1406
BsaJI CCNNGG 3 cut(s) 104, 351, 362
BsaXI ACNNNNNCTCC 2 cut(s) 225, 255
Bsc4I CCNNNNNNNGG 3 cut(s) 364, 397, 725
Bse1I ACTGG 2 cut(s) 25, 701
Bse3DI GCAATG 2 cut(s) 524, 667
BseDI CCNNGG 3 cut(s) 104, 351, 362
BseGI GGATG 6 cut(s) 538, 609, 780, 856, 1285, 1447
BseLI CCNNNNNNNGG 3 cut(s) 364, 397, 725
BseMI GCAATG 2 cut(s) 524, 667
BseMII CTCAG 2 cut(s) 528, 864
BseNI ACTGG 2 cut(s) 25, 701
BseRI GAGGAG 1 cut(s) 1204
BseSI GKGCMC 2 cut(s) 191, 1480
BseXI GCAGC 2 cut(s) 264, 1476
BseYI CCCAGC 1 cut(s) 66
BshFI GGCC 4 cut(s) 189, 344, 625, 1243
BsiHKAI GWGCWC 3 cut(s) 973, 1480, 1510
BslFI GGGAC 2 cut(s) 381, 906
BslI CCNNNNNNNGG 3 cut(s) 364, 397, 725
BsmAI GTCTC 1 cut(s) 1493
BsmFI GGGAC 2 cut(s) 381, 906
BsmI GAATGC 3 cut(s) 31, 81, 255
BsnI GGCC 4 cut(s) 189, 344, 625, 1243
Bsp120I GGGCCC 1 cut(s) 187
Bsp1286I GDGCHC 4 cut(s) 191, 973, 1480, 1510
Bsp143I GATC 7 cut(s) 71, 202, 631, 991, 1181, 1213, 1371
Bsp1720I GCTNAGC 1 cut(s) 5
Bsp19I CCATGG 1 cut(s) 351
BspACI CCGC 3 cut(s) 496, 529, 789
BspANI GGCC 4 cut(s) 189, 344, 625, 1243
BspCNI CTCAG 2 cut(s) 529, 865
BspLI GGNNCC 2 cut(s) 189, 369
BspOI GCTAGC 1 cut(s) 947
BspPI GGATC 2 cut(s) 986, 1379
BsrDI GCAATG 2 cut(s) 524, 667
BsrI ACTGG 2 cut(s) 25, 701
BssECI CCNNGG 3 cut(s) 104, 351, 362
BssMI GATC 7 cut(s) 71, 202, 631, 991, 1181, 1213, 1371
BssT1I CCWWGG 3 cut(s) 104, 351, 362
Bst4CI ACNGT 3 cut(s) 17, 1031, 1274
BstC8I GCNNGC 1 cut(s) 945
BstDEI CTNAG 5 cut(s) 5, 36, 537, 756, 873
BstDSI CCRYGG 1 cut(s) 351
BstEII GGTNACC 2 cut(s) 775, 849
BstENI CCTNNNNNAGG 1 cut(s) 723
BstF5I GGATG 6 cut(s) 538, 609, 780, 856, 1285, 1447
BstHHI GCGC 1 cut(s) 579
BstKTI GATC 7 cut(s) 74, 205, 634, 994, 1184, 1216, 1374
BstMAI GTCTC 1 cut(s) 1493
BstMBI GATC 7 cut(s) 71, 202, 631, 991, 1181, 1213, 1371
BstMWI GCNNNNNNNGC 1 cut(s) 1538
BstPAI GACNNNNGTC 1 cut(s) 486
BstPI GGTNACC 2 cut(s) 775, 849
BstSLI GKGCMC 2 cut(s) 191, 1480
BstV1I GCAGC 2 cut(s) 264, 1476
BstX2I RGATCY 2 cut(s) 202, 1181
BstYI RGATCY 2 cut(s) 202, 1181
BsuRI GGCC 4 cut(s) 189, 344, 625, 1243
BtgI CCRYGG 1 cut(s) 351
BtrI CACGTC 1 cut(s) 1557
BtsCI GGATG 6 cut(s) 538, 609, 780, 856, 1285, 1447
BtsI GCAGTG 2 cut(s) 784, 1055
BtsIMutI CAGTG 3 cut(s) 784, 1036, 1055
Cac8I GCNNGC 1 cut(s) 945
CfoI GCGC 1 cut(s) 579
Cfr13I GGNCC 5 cut(s) 187, 188, 355, 368, 624
Csp6I GTAC 4 cut(s) 18, 878, 1157, 1308
CspCI CAANNNNNGTGG 4 cut(s) 943, 978, 1348, 1383
CviAII CATG 8 cut(s) 352, 499, 590, 900, 1093, 1133, 1169, 1400
CviQI GTAC 4 cut(s) 18, 878, 1157, 1308
DdeI CTNAG 5 cut(s) 5, 36, 537, 756, 873
DpnI GATC 7 cut(s) 73, 204, 633, 993, 1183, 1215, 1373
DpnII GATC 7 cut(s) 71, 202, 631, 991, 1181, 1213, 1371
DraI TTTAAA 1 cut(s) 999
DrdI GACNNNNNNGTC 1 cut(s) 563
DriI GACNNNNNGTC 1 cut(s) 448
DseDI GACNNNNNNGTC 1 cut(s) 563
Eam1105I GACNNNNNGTC 1 cut(s) 448
Ecl136II GAGCTC 1 cut(s) 1508
Eco130I CCWWGG 3 cut(s) 104, 351, 362
Eco147I AGGCCT 1 cut(s) 344
Eco24I GRGCYC 2 cut(s) 191, 1510
Eco47I GGWCC 2 cut(s) 355, 368
Eco53kI GAGCTC 1 cut(s) 1508
Eco57I CTGAAG 3 cut(s) 403, 429, 768
Eco91I GGTNACC 2 cut(s) 775, 849
EcoICRI GAGCTC 1 cut(s) 1508
EcoNI CCTNNNNNAGG 1 cut(s) 723
EcoO109I RGGNCCY 1 cut(s) 188
EcoO65I GGTNACC 2 cut(s) 775, 849
EcoT14I CCWWGG 3 cut(s) 104, 351, 362
EcoT38I GRGCYC 2 cut(s) 191, 1510
ErhI CCWWGG 3 cut(s) 104, 351, 362
FaeI CATG 8 cut(s) 355, 502, 593, 903, 1096, 1136, 1172, 1403
FalI AAGNNNNNCTT 8 cut(s) 311, 343, 592, 624, 957, 989, 1228, 1260
FaqI GGGAC 2 cut(s) 381, 906
FatI CATG 8 cut(s) 351, 498, 589, 899, 1092, 1132, 1168, 1399
FauI CCCGC 1 cut(s) 522
FauNDI CATATG 1 cut(s) 263
Fnu4HI GCNGC 2 cut(s) 253, 1490
FokI GGATG 6 cut(s) 545, 616, 767, 843, 1292, 1454
FriOI GRGCYC 2 cut(s) 191, 1510
Fsp4HI GCNGC 2 cut(s) 253, 1490
FspBI CTAG 3 cut(s) 105, 944, 1493
FspI TGCGCA 1 cut(s) 578
GlaI GCGC 1 cut(s) 578
GluI GCNGC 2 cut(s) 253, 1490
GsaI CCCAGC 1 cut(s) 70
GsuI CTGGAG 1 cut(s) 1538
HaeIII GGCC 4 cut(s) 189, 344, 625, 1243
HhaI GCGC 1 cut(s) 579
Hin1II CATG 8 cut(s) 355, 502, 593, 903, 1096, 1136, 1172, 1403
Hin6I GCGC 1 cut(s) 577
HinP1I GCGC 1 cut(s) 577
HincII GTYRAC 1 cut(s) 1450
HindII GTYRAC 1 cut(s) 1450
HindIII AAGCTT 3 cut(s) 750, 1361, 1408
HinfI GANTC 2 cut(s) 502, 834
HphI GGTGA 3 cut(s) 661, 1244, 1322
Hpy166II GTNNAC 3 cut(s) 880, 1450, 1478
Hpy188I TCNGA 5 cut(s) 304, 454, 573, 682, 1546
Hpy188III TCNNGA 4 cut(s) 384, 616, 746, 1517
Hpy8I GTNNAC 3 cut(s) 880, 1450, 1478
HpyAV CCTTC 4 cut(s) 535, 752, 959, 1254
HpyCH4III ACNGT 3 cut(s) 17, 1031, 1274
HpyCH4IV ACGT 2 cut(s) 94, 1556
HpyF10VI GCNNNNNNNGC 1 cut(s) 1538
HpyF3I CTNAG 5 cut(s) 5, 36, 537, 756, 873
HpySE526I ACGT 2 cut(s) 94, 1556
Hsp92II CATG 8 cut(s) 355, 502, 593, 903, 1096, 1136, 1172, 1403
HspAI GCGC 1 cut(s) 577
Kzo9I GATC 7 cut(s) 71, 202, 631, 991, 1181, 1213, 1371
LmnI GCTCC 2 cut(s) 246, 968
Lsp1109I GCAGC 2 cut(s) 264, 1476
LweI GCATC 7 cut(s) 312, 523, 564, 594, 621, 1117, 1550
MaeI CTAG 3 cut(s) 105, 944, 1493
MaeII ACGT 2 cut(s) 94, 1556
MaeIII GTNAC 4 cut(s) 458, 721, 775, 849
MalI GATC 7 cut(s) 73, 204, 633, 993, 1183, 1215, 1373
MboI GATC 7 cut(s) 71, 202, 631, 991, 1181, 1213, 1371
MboII GAAGA 4 cut(s) 197, 422, 1207, 1535
MflI RGATCY 2 cut(s) 202, 1181
MhlI GDGCHC 4 cut(s) 191, 973, 1480, 1510
MmeI TCCRAC 1 cut(s) 382
MnlI CCTC 7 cut(s) 99, 334, 864, 868, 1182, 1185, 1513
MseI TTAA 4 cut(s) 51, 693, 998, 1299
MslI CAYNNNNRTG 1 cut(s) 1433
Mva1269I GAATGC 3 cut(s) 31, 81, 255
MwoI GCNNNNNNNGC 1 cut(s) 1538
NcoI CCATGG 1 cut(s) 351
NdeI CATATG 1 cut(s) 263
NdeII GATC 7 cut(s) 71, 202, 631, 991, 1181, 1213, 1371
NheI GCTAGC 1 cut(s) 943
NlaIII CATG 8 cut(s) 355, 502, 593, 903, 1096, 1136, 1172, 1403
NlaIV GGNNCC 2 cut(s) 189, 369
NmuCI GTSAC 1 cut(s) 458
NsbI TGCGCA 1 cut(s) 578
PceI AGGCCT 1 cut(s) 344
PctI GAATGC 3 cut(s) 31, 81, 255
PfeI GAWTC 2 cut(s) 502, 834
PkrI GCNGC 2 cut(s) 254, 1491
PshAI GACNNNNGTC 1 cut(s) 486
PsiI TTATAA 1 cut(s) 197
Psp124BI GAGCTC 1 cut(s) 1510
Psp1406I AACGTT 1 cut(s) 94
PspEI GGTNACC 2 cut(s) 775, 849
PspFI CCCAGC 1 cut(s) 66
PspN4I GGNNCC 2 cut(s) 189, 369
PspOMI GGGCCC 1 cut(s) 187
PspPI GGNCC 5 cut(s) 187, 188, 355, 368, 624
PsuI RGATCY 2 cut(s) 202, 1181
RsaI GTAC 4 cut(s) 19, 879, 1158, 1309
RsaNI GTAC 4 cut(s) 18, 878, 1157, 1308
RseI CAYNNNNRTG 1 cut(s) 1433
SacI GAGCTC 1 cut(s) 1510
SaqAI TTAA 4 cut(s) 51, 693, 998, 1299
SatI GCNGC 2 cut(s) 253, 1490
Sau3AI GATC 7 cut(s) 71, 202, 631, 991, 1181, 1213, 1371
Sau96I GGNCC 5 cut(s) 187, 188, 355, 368, 624
ScaI AGTACT 1 cut(s) 19
SduI GDGCHC 4 cut(s) 191, 973, 1480, 1510
SfaNI GCATC 7 cut(s) 312, 523, 564, 594, 621, 1117, 1550
SinI GGWCC 2 cut(s) 355, 368
SmiMI CAYNNNNRTG 1 cut(s) 1433
SmlI CTYRAG 2 cut(s) 1358, 1421
SmoI CTYRAG 2 cut(s) 1358, 1421
SseBI AGGCCT 1 cut(s) 344
SsiI CCGC 3 cut(s) 496, 529, 789
SspMI CTAG 3 cut(s) 105, 944, 1493
SstI GAGCTC 1 cut(s) 1510
StuI AGGCCT 1 cut(s) 344
StyI CCWWGG 3 cut(s) 104, 351, 362
TaaI ACNGT 3 cut(s) 17, 1031, 1274
TaiI ACGT 2 cut(s) 97, 1559
TatI WGTACW 1 cut(s) 17
TfiI GAWTC 2 cut(s) 502, 834
Tru1I TTAA 4 cut(s) 51, 693, 998, 1299
Tru9I TTAA 4 cut(s) 51, 693, 998, 1299
TscAI CASTG 3 cut(s) 791, 1036, 1062
TseFI GTSAC 1 cut(s) 458
TseI GCWGC 2 cut(s) 252, 1489
Tsp45I GTSAC 1 cut(s) 458
TspDTI ATGAA 8 cut(s) 131, 183, 515, 563, 888, 1005, 1280, 1499
TspRI CASTG 3 cut(s) 791, 1036, 1062
VneI GTGCAC 1 cut(s) 1476
VpaK11BI GGWCC 2 cut(s) 355, 368
XagI CCTNNNNNAGG 1 cut(s) 723
XapI RAATTY 4 cut(s) 311, 652, 1381, 1465
XcmI CCANNNNNNNNNTGG 1 cut(s) 791
XmaJI CCTAGG 1 cut(s) 104
XspI CTAG 3 cut(s) 105, 944, 1493
ZrmI AGTACT 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.