Rw2G028280

F-box associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0004545
Physical Location & Seq
Reverse (-)
45084361 .. 45091725
7365 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G028280.1

Sequence Viewer

Length: 612 bp
ATGACAGGAGTGATCTATTGGTTTTACCGTGAGCTTTCTTCGTCTTGCATAGATTCTTTTGACATGGACAATGGAAGGTTCCAGTCAGTTCCACCACTTCCTTTTGAACTGAGAACAAGTAATCATCATGTTAGCTTGGGAGTTTTAGGTGATTTTCTTTCTGTGTGTGAAGTAGCTTTCCTTGATGACATTAATGTGTGGGTAATGATAGATAATGGTGGAGAGAAGTCTTGGATGAAAGAACTATGTATTTGTACTTTTTGCCATGAAAGGCAGTGGCCGTTTGGCTTATATCAACCGATTAAATACTCTCACAATGGAGGTTTGGTGATCTTTCATTCTAGTAGTAATGCCTTCATGTACTATCACCCAAAAGACCAAACATACAAATACCTTAAGCTTTGCGGATCTCAATCAAATTGTGAAGCCGTTAGTCATGTTCCAACCTTCATTTCGCTCAAGAACATTTTAACTGGGGCCAAAACAGAATTGCGCAGAGAGGGTAGAGCTCTTTCTTTGGAGGAAGAAGAAATTCAAATTTGCTTTCCAAAGGAAGTAAATGAAGAAATAACCTTAGTGGTGGTGTTGACTGGGAATAGAATGCAGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

203

Amino Acids

23.28

Weight (kDa)

5.47

Isoelectric Point (pI)

50.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 2 - 149 5.9e-07 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 494
AciI CCGC 1 cut(s) 405
AclWI GGATC 1 cut(s) 415
AcoI YGGCCR 1 cut(s) 278
AcsI RAATTY 2 cut(s) 531, 537
AfaI GTAC 2 cut(s) 256, 362
AflII CTTAAG 1 cut(s) 395
AgsI TTSAA 2 cut(s) 107, 536
AjuI GAANNNNNNNTTGG 2 cut(s) 436, 468
AluBI AGCT 5 cut(s) 34, 135, 176, 400, 509
AluI AGCT 5 cut(s) 34, 135, 176, 400, 509
Alw21I GWGCWC 1 cut(s) 511
AlwI GGATC 1 cut(s) 415
AoxI GGCC 2 cut(s) 278, 477
ApoI RAATTY 2 cut(s) 531, 537
AseI ATTAAT 1 cut(s) 192
Asp700I GAANNNNTTC 1 cut(s) 531
AspLEI GCGC 1 cut(s) 495
AspS9I GGNCC 1 cut(s) 477
AsuHPI GGTGA 3 cut(s) 161, 340, 359
BanII GRGCYC 1 cut(s) 511
Bbv12I GWGCWC 1 cut(s) 511
BceAI ACGGC 2 cut(s) 265, 413
BfaI CTAG 1 cut(s) 342
BfrI CTTAAG 1 cut(s) 395
BmgT120I GGNCC 1 cut(s) 477
BmiI GGNNCC 2 cut(s) 80, 478
BmrI ACTGGG 2 cut(s) 483, 600
BmuI ACTGGG 2 cut(s) 483, 600
BpuEI CTTGAG 1 cut(s) 443
BsaBI GATNNNNATC 1 cut(s) 412
BsaXI ACNNNNNCTCC 2 cut(s) 312, 342
Bse1I ACTGG 3 cut(s) 82, 478, 595
Bse8I GATNNNNATC 1 cut(s) 412
BseGI GGATG 1 cut(s) 240
BseJI GATNNNNATC 1 cut(s) 412
BseMII CTCAG 1 cut(s) 101
BseNI ACTGG 3 cut(s) 82, 478, 595
BshFI GGCC 2 cut(s) 280, 479
BsiHKAI GWGCWC 1 cut(s) 511
BsmI GAATGC 1 cut(s) 606
BsnI GGCC 2 cut(s) 280, 479
Bsp1286I GDGCHC 1 cut(s) 511
Bsp143I GATC 3 cut(s) 12, 330, 407
BspACI CCGC 1 cut(s) 405
BspANI GGCC 2 cut(s) 280, 479
BspCNI CTCAG 1 cut(s) 102
BspLI GGNNCC 2 cut(s) 80, 478
BspPI GGATC 1 cut(s) 415
BspTI CTTAAG 1 cut(s) 395
BsrI ACTGG 3 cut(s) 82, 478, 595
BssMI GATC 3 cut(s) 12, 330, 407
Bst4CI ACNGT 1 cut(s) 29
BstAFI CTTAAG 1 cut(s) 395
BstDEI CTNAG 2 cut(s) 110, 574
BstF5I GGATG 1 cut(s) 240
BstHHI GCGC 1 cut(s) 495
BstKTI GATC 3 cut(s) 15, 333, 410
BstMBI GATC 3 cut(s) 12, 330, 407
BstX2I RGATCY 1 cut(s) 407
BstYI RGATCY 1 cut(s) 407
BsuRI GGCC 2 cut(s) 280, 479
BtsCI GGATG 1 cut(s) 240
BtsI GCAGTG 2 cut(s) 281, 611
BtsIMutI CAGTG 2 cut(s) 281, 611
CfoI GCGC 1 cut(s) 495
Cfr13I GGNCC 1 cut(s) 477
Csp6I GTAC 2 cut(s) 255, 361
CviAII CATG 5 cut(s) 64, 128, 266, 358, 437
CviJI RGCY 9 cut(s) 34, 135, 176, 280, 288, 400, 428, 479, 509
CviKI_1 RGCY 9 cut(s) 34, 135, 176, 280, 288, 400, 428, 479, 509
CviQI GTAC 2 cut(s) 255, 361
DdeI CTNAG 2 cut(s) 110, 574
DpnI GATC 3 cut(s) 14, 332, 409
DpnII GATC 3 cut(s) 12, 330, 407
EaeI YGGCCR 1 cut(s) 278
Ecl136II GAGCTC 1 cut(s) 509
Eco24I GRGCYC 1 cut(s) 511
Eco53kI GAGCTC 1 cut(s) 509
EcoICRI GAGCTC 1 cut(s) 509
EcoT38I GRGCYC 1 cut(s) 511
FaeI CATG 5 cut(s) 67, 131, 269, 361, 440
FaiI YATR 9 cut(s) 50, 65, 129, 247, 267, 292, 359, 385, 438
FatI CATG 5 cut(s) 63, 127, 265, 357, 436
FokI GGATG 1 cut(s) 247
FriOI GRGCYC 1 cut(s) 511
FspBI CTAG 1 cut(s) 342
FspI TGCGCA 1 cut(s) 494
GlaI GCGC 1 cut(s) 494
HaeIII GGCC 2 cut(s) 280, 479
HhaI GCGC 1 cut(s) 495
Hin1II CATG 5 cut(s) 67, 131, 269, 361, 440
Hin6I GCGC 1 cut(s) 493
HinP1I GCGC 1 cut(s) 493
HincII GTYRAC 1 cut(s) 588
HindII GTYRAC 1 cut(s) 588
HindIII AAGCTT 1 cut(s) 398
HinfI GANTC 1 cut(s) 53
HphI GGTGA 3 cut(s) 161, 340, 359
Hpy166II GTNNAC 1 cut(s) 588
Hpy188III TCNNGA 1 cut(s) 460
Hpy8I GTNNAC 1 cut(s) 588
HpyAV CCTTC 3 cut(s) 69, 364, 457
HpyCH4III ACNGT 1 cut(s) 29
HpyCH4V TGCA 2 cut(s) 48, 604
HpyF3I CTNAG 2 cut(s) 110, 574
Hsp92II CATG 5 cut(s) 67, 131, 269, 361, 440
HspAI GCGC 1 cut(s) 493
Kzo9I GATC 3 cut(s) 12, 330, 407
LpnPI CCDG 3 cut(s) 95, 459, 576
MaeI CTAG 1 cut(s) 342
MalI GATC 3 cut(s) 14, 332, 409
MboI GATC 3 cut(s) 12, 330, 407
MboII GAAGA 4 cut(s) 30, 536, 539, 575
MflI RGATCY 1 cut(s) 407
MhlI GDGCHC 1 cut(s) 511
MluCI AATT 4 cut(s) 418, 488, 531, 537
MmeI TCCRAC 1 cut(s) 467
MnlI CCTC 3 cut(s) 314, 493, 514
MroXI GAANNNNTTC 1 cut(s) 531
MseI TTAA 5 cut(s) 192, 303, 396, 470, 610
MslI CAYNNNNRTG 1 cut(s) 194
MspCI CTTAAG 1 cut(s) 395
Mva1269I GAATGC 1 cut(s) 606
NdeII GATC 3 cut(s) 12, 330, 407
NlaIII CATG 5 cut(s) 67, 131, 269, 361, 440
NlaIV GGNNCC 2 cut(s) 80, 478
NsbI TGCGCA 1 cut(s) 494
PctI GAATGC 1 cut(s) 606
PdmI GAANNNNTTC 1 cut(s) 531
PfeI GAWTC 1 cut(s) 53
PshBI ATTAAT 1 cut(s) 192
Psp124BI GAGCTC 1 cut(s) 511
PspN4I GGNNCC 2 cut(s) 80, 478
PspPI GGNCC 1 cut(s) 477
PsuI RGATCY 1 cut(s) 407
RsaI GTAC 2 cut(s) 256, 362
RsaNI GTAC 2 cut(s) 255, 361
RseI CAYNNNNRTG 1 cut(s) 194
SacI GAGCTC 1 cut(s) 511
SaqAI TTAA 5 cut(s) 192, 303, 396, 470, 610
Sau3AI GATC 3 cut(s) 12, 330, 407
Sau96I GGNCC 1 cut(s) 477
SduI GDGCHC 1 cut(s) 511
SmiMI CAYNNNNRTG 1 cut(s) 194
SmlI CTYRAG 2 cut(s) 395, 458
SmoI CTYRAG 2 cut(s) 395, 458
Sse9I AATT 4 cut(s) 418, 488, 531, 537
SsiI CCGC 1 cut(s) 405
SspMI CTAG 1 cut(s) 342
SstI GAGCTC 1 cut(s) 511
TaaI ACNGT 1 cut(s) 29
TasI AATT 4 cut(s) 418, 488, 531, 537
TatI WGTACW 2 cut(s) 254, 360
TfiI GAWTC 1 cut(s) 53
Tru1I TTAA 5 cut(s) 192, 303, 396, 470, 610
Tru9I TTAA 5 cut(s) 192, 303, 396, 470, 610
TscAI CASTG 2 cut(s) 281, 611
TspDTI ATGAA 6 cut(s) 251, 282, 326, 346, 439, 576
TspRI CASTG 2 cut(s) 281, 611
Vha464I CTTAAG 1 cut(s) 395
VspI ATTAAT 1 cut(s) 192
XapI RAATTY 2 cut(s) 531, 537
XmnI GAANNNNTTC 1 cut(s) 531
XspI CTAG 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.