Rh2AG348000

F-box associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0004545
Physical Location & Seq
Reverse (-)
51146775 .. 51147272
498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG348000.1

Sequence Viewer

Length: 498 bp
ATGACAGGAGTGATCTATTGGTTTTACCGTGAGCTTTCTTCGTCTTGCATAGATTCTTTTGACATTGACAATGGAAGGTTCCAGTCAGTTCCACCACTTCCTTTTGAACTGAGAACAAGTAATCGTCACGTTAGCTTATTGGGAGTTTTAGGTGATTTTCTTTCTGTGTGTGAAGTTGCTTTCCTTGATGACATTAATGTGTGGGTAATGATAGATAATGGCGGAGAGAAGTCTTGGATGAAAGAGCTTTGTATTTGTACTTTAATTCATGAAAGGCAGTGGCCATTTGGCTTATATCAACCGATGAAGTACTTAAACAATGGAGGTTTGGTGATGTTTCATTCTAGTAGTAATGCCTTCATGTACTACCACCCAAAACACCAAACATACAAATACCTTAAGCTTTGCGGATCTCAATCAAATTGTGAAGCCGTTAGTCATGTTCCAACCTTCATTTCGCTCAAGAGCATTTTAACTGGGGCCAAAACAGAAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

165

Amino Acids

18.88

Weight (kDa)

6.28

Isoelectric Point (pI)

40.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 2 - 150 2.7e-08 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 222, 408
AclWI GGATC 1 cut(s) 418
AcoI YGGCCR 1 cut(s) 281
AfaI GTAC 3 cut(s) 259, 311, 365
AflII CTTAAG 1 cut(s) 398
AgsI TTSAA 1 cut(s) 107
AjuI GAANNNNNNNTTGG 2 cut(s) 439, 471
AluBI AGCT 4 cut(s) 34, 135, 247, 403
AluI AGCT 4 cut(s) 34, 135, 247, 403
AlwI GGATC 1 cut(s) 418
AoxI GGCC 2 cut(s) 281, 480
AseI ATTAAT 1 cut(s) 195
AspS9I GGNCC 1 cut(s) 480
AsuHPI GGTGA 2 cut(s) 164, 343
BalI TGGCCA 1 cut(s) 283
BceAI ACGGC 1 cut(s) 416
BfaI CTAG 1 cut(s) 345
BfrI CTTAAG 1 cut(s) 398
BmcAI AGTACT 1 cut(s) 311
BmgT120I GGNCC 1 cut(s) 480
BmiI GGNNCC 2 cut(s) 80, 481
BmrI ACTGGG 1 cut(s) 486
BmuI ACTGGG 1 cut(s) 486
BpuEI CTTGAG 1 cut(s) 446
BsaBI GATNNNNATC 1 cut(s) 415
BsaXI ACNNNNNCTCC 2 cut(s) 315, 345
Bse1I ACTGG 2 cut(s) 82, 481
Bse8I GATNNNNATC 1 cut(s) 415
BseGI GGATG 1 cut(s) 243
BseJI GATNNNNATC 1 cut(s) 415
BseMII CTCAG 1 cut(s) 101
BseNI ACTGG 2 cut(s) 82, 481
BshFI GGCC 2 cut(s) 283, 482
BsnI GGCC 2 cut(s) 283, 482
Bsp143I GATC 2 cut(s) 12, 410
BspACI CCGC 2 cut(s) 222, 408
BspANI GGCC 2 cut(s) 283, 482
BspCNI CTCAG 1 cut(s) 102
BspHI TCATGA 1 cut(s) 268
BspLI GGNNCC 2 cut(s) 80, 481
BspPI GGATC 1 cut(s) 418
BspTI CTTAAG 1 cut(s) 398
BsrI ACTGG 2 cut(s) 82, 481
BssMI GATC 2 cut(s) 12, 410
Bst4CI ACNGT 1 cut(s) 29
BstAFI CTTAAG 1 cut(s) 398
BstDEI CTNAG 1 cut(s) 110
BstF5I GGATG 1 cut(s) 243
BstKTI GATC 2 cut(s) 15, 413
BstMBI GATC 2 cut(s) 12, 410
BstX2I RGATCY 1 cut(s) 410
BstYI RGATCY 1 cut(s) 410
BsuRI GGCC 2 cut(s) 283, 482
BtsCI GGATG 1 cut(s) 243
BtsI GCAGTG 1 cut(s) 284
BtsIMutI CAGTG 1 cut(s) 284
CciI TCATGA 1 cut(s) 268
Cfr13I GGNCC 1 cut(s) 480
Csp6I GTAC 3 cut(s) 258, 310, 364
CviAII CATG 3 cut(s) 269, 361, 440
CviJI RGCY 8 cut(s) 34, 135, 247, 283, 291, 403, 431, 482
CviKI_1 RGCY 8 cut(s) 34, 135, 247, 283, 291, 403, 431, 482
CviQI GTAC 3 cut(s) 258, 310, 364
DdeI CTNAG 1 cut(s) 110
DpnI GATC 2 cut(s) 14, 412
DpnII GATC 2 cut(s) 12, 410
EaeI YGGCCR 1 cut(s) 281
EciI GGCGGA 1 cut(s) 237
FaeI CATG 3 cut(s) 272, 364, 443
FaiI YATR 7 cut(s) 50, 270, 295, 362, 388, 441, 496
FatI CATG 3 cut(s) 268, 360, 439
FokI GGATG 1 cut(s) 250
FspBI CTAG 1 cut(s) 345
HaeIII GGCC 2 cut(s) 283, 482
Hin1II CATG 3 cut(s) 272, 364, 443
HindIII AAGCTT 1 cut(s) 401
HinfI GANTC 1 cut(s) 53
HphI GGTGA 2 cut(s) 164, 343
Hpy188III TCNNGA 2 cut(s) 269, 463
HpyAV CCTTC 3 cut(s) 69, 367, 460
HpyCH4III ACNGT 1 cut(s) 29
HpyCH4IV ACGT 1 cut(s) 129
HpyCH4V TGCA 1 cut(s) 48
HpyF3I CTNAG 1 cut(s) 110
HpySE526I ACGT 1 cut(s) 129
Hsp92II CATG 3 cut(s) 272, 364, 443
Kzo9I GATC 2 cut(s) 12, 410
LpnPI CCDG 2 cut(s) 95, 462
MaeI CTAG 1 cut(s) 345
MaeII ACGT 1 cut(s) 129
MaeIII GTNAC 1 cut(s) 125
MalI GATC 2 cut(s) 14, 412
MboI GATC 2 cut(s) 12, 410
MboII GAAGA 1 cut(s) 30
MflI RGATCY 1 cut(s) 410
MlsI TGGCCA 1 cut(s) 283
MluCI AATT 2 cut(s) 264, 421
MluNI TGGCCA 1 cut(s) 283
MmeI TCCRAC 1 cut(s) 470
MnlI CCTC 1 cut(s) 317
Mox20I TGGCCA 1 cut(s) 283
MscI TGGCCA 1 cut(s) 283
MseI TTAA 5 cut(s) 195, 263, 314, 399, 473
MslI CAYNNNNRTG 1 cut(s) 197
Msp20I TGGCCA 1 cut(s) 283
MspCI CTTAAG 1 cut(s) 398
NdeII GATC 2 cut(s) 12, 410
NlaIII CATG 3 cut(s) 272, 364, 443
NlaIV GGNNCC 2 cut(s) 80, 481
NmuCI GTSAC 1 cut(s) 125
PagI TCATGA 1 cut(s) 268
PfeI GAWTC 1 cut(s) 53
PshBI ATTAAT 1 cut(s) 195
PspN4I GGNNCC 2 cut(s) 80, 481
PspPI GGNCC 1 cut(s) 480
PsuI RGATCY 1 cut(s) 410
RsaI GTAC 3 cut(s) 259, 311, 365
RsaNI GTAC 3 cut(s) 258, 310, 364
RseI CAYNNNNRTG 1 cut(s) 197
SaqAI TTAA 5 cut(s) 195, 263, 314, 399, 473
Sau3AI GATC 2 cut(s) 12, 410
Sau96I GGNCC 1 cut(s) 480
ScaI AGTACT 1 cut(s) 311
SmiMI CAYNNNNRTG 1 cut(s) 197
SmlI CTYRAG 2 cut(s) 398, 461
SmoI CTYRAG 2 cut(s) 398, 461
Sse9I AATT 2 cut(s) 264, 421
SsiI CCGC 2 cut(s) 222, 408
SspMI CTAG 1 cut(s) 345
TaaI ACNGT 1 cut(s) 29
TaiI ACGT 1 cut(s) 132
TasI AATT 2 cut(s) 264, 421
TatI WGTACW 3 cut(s) 257, 309, 363
TfiI GAWTC 1 cut(s) 53
Tru1I TTAA 5 cut(s) 195, 263, 314, 399, 473
Tru9I TTAA 5 cut(s) 195, 263, 314, 399, 473
TscAI CASTG 1 cut(s) 284
TseFI GTSAC 1 cut(s) 125
Tsp45I GTSAC 1 cut(s) 125
TspDTI ATGAA 7 cut(s) 254, 257, 285, 320, 329, 349, 442
TspRI CASTG 1 cut(s) 284
Vha464I CTTAAG 1 cut(s) 398
VspI ATTAAT 1 cut(s) 195
XspI CTAG 1 cut(s) 345
ZrmI AGTACT 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.