Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0004545

Physical Location & Seq

Genomic Coordinates Reverse (-)

45175242 .. 45178396

Gene Structure 3155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G028310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGACAGGAGTGATCTATTGGTTTTACCGTGAGCTTTCTTCGTCTTGCATAGATTCTTTTGACATTGACAATGGAAGGTTCCAGTCAGTTCCACCACTTCCTTTTGAACTGAGAACAAGTAATCATCATGTTAGATTGGGAGTTTTAGGTGATTTTCTTTCTGTGTGTGAAGTTGCTTTCCTTGATGACATTAATGTGTGGGTAGTGATAGATAATGAACTATGTATTTGTACTTTTAGTCATGAAAAGCAGTGGCCGTTTGGTTTGGTGATCTTTCATTCTAGTAGTAATGCCTTCATGTACTATCACCCAAAAGACCAAACATACAAATACATTAAGCTTTGCGGATCTCGATCAAATTATGAAGCCATTAGTCATGTTCCTACCTTCATTTTGCTCAAGAGCATTTTAACTGGGGCCAAAACAGAATTGCGCAGAGAGGGTAGAGCTCTTTCTTTGGAGGAAGAAGAAATTCAAATTTGCTTTCCAAAGAAAGTAAATGATGAAATAACCTCAGTGGTGGTGTCGACTGGTATTAGAAGCTACAAAATTATAGGCTTACCTGCTCTCATACCCTTATTGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1 FBA_3

Protein Analysis

195

Amino Acids

22.26

Weight (kDa)

5.85

Isoelectric Point (pI)

48.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004545)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g27870 FvH4_6g28330
malus_domestica	MD01G1181800.v1.1 MD17G1263300.v1.1
prunus_persica	Prupe.3G111700_v2.0.a1 Prupe.3G112000_v2.0.a1 Prupe.3G112200_v2.0.a1 Prupe.3G112200_v2.0.a1 Prupe.3G112400_v2.0.a1 Prupe.3G112400_v2.0.a1
pyrus_communis	pycom17g26350
rosa_chinensis	RchiOBHm_Chr2g0131131
rosa_laevigata	RLG00000019173 RLG00000019176
rosa_multiflora	Rmu_sc0003629.1_g000070
rosa_roxburghii	Rroxscaffold_2G00113130
rosa_rugosa	Rorug02G0327300
rosa_samantha	Rh2AG347600 Rh2AG348000 Rh2BG355200 Rh2BG355300 Rh2CG333800 Rh2CG333900 Rh2CG334000 Rh2CG335100 Rh2DG373000 Rh2DG373300 Rh2DG374100
rosa_wichuraiana	Rw2G028230 Rw2G028250 Rw2G028280 Rw2G028310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	434
Acc36I	ACCTGC	1 cut(s)	571
AccI	GTMKAC	1 cut(s)	527
AciI	CCGC	1 cut(s)	345
AclWI	GGATC	1 cut(s)	355
AcoI	YGGCCR	1 cut(s)	254
AcsI	RAATTY	2 cut(s)	471, 477
AfaI	GTAC	2 cut(s)	232, 302
AgsI	TTSAA	2 cut(s)	107, 476
AluBI	AGCT	4 cut(s)	34, 340, 449, 543
AluI	AGCT	4 cut(s)	34, 340, 449, 543
Alw21I	GWGCWC	1 cut(s)	451
AlwI	GGATC	1 cut(s)	355
AoxI	GGCC	2 cut(s)	254, 417
ApoI	RAATTY	2 cut(s)	471, 477
AseI	ATTAAT	1 cut(s)	192
Asp700I	GAANNNNTTC	1 cut(s)	471
AspLEI	GCGC	1 cut(s)	435
AspS9I	GGNCC	1 cut(s)	417
AsuHPI	GGTGA	3 cut(s)	161, 280, 299
BanII	GRGCYC	1 cut(s)	451
Bbv12I	GWGCWC	1 cut(s)	451
BceAI	ACGGC	1 cut(s)	241
BfaI	CTAG	1 cut(s)	282
BfuAI	ACCTGC	1 cut(s)	571
BmgT120I	GGNCC	1 cut(s)	417
BmiI	GGNNCC	2 cut(s)	80, 418
BmrI	ACTGGG	1 cut(s)	423
BmuI	ACTGGG	1 cut(s)	423
BpuEI	CTTGAG	1 cut(s)	383
BsaBI	GATNNNNATC	1 cut(s)	352
Bse1I	ACTGG	3 cut(s)	82, 418, 535
Bse8I	GATNNNNATC	1 cut(s)	352
BseJI	GATNNNNATC	1 cut(s)	352
BseMII	CTCAG	2 cut(s)	101, 528
BseNI	ACTGG	3 cut(s)	82, 418, 535
BshFI	GGCC	2 cut(s)	256, 419
BsiHKAI	GWGCWC	1 cut(s)	451
BsnI	GGCC	2 cut(s)	256, 419
Bsp1286I	GDGCHC	1 cut(s)	451
Bsp143I	GATC	4 cut(s)	12, 270, 347, 353
BspACI	CCGC	1 cut(s)	345
BspANI	GGCC	2 cut(s)	256, 419
BspCNI	CTCAG	2 cut(s)	102, 527
BspHI	TCATGA	1 cut(s)	241
BspLI	GGNNCC	2 cut(s)	80, 418
BspMI	ACCTGC	1 cut(s)	571
BspPI	GGATC	1 cut(s)	355
BsrI	ACTGG	3 cut(s)	82, 418, 535
BssMI	GATC	4 cut(s)	12, 270, 347, 353
Bst4CI	ACNGT	1 cut(s)	29
BstDEI	CTNAG	2 cut(s)	110, 514
BstHHI	GCGC	1 cut(s)	435
BstKTI	GATC	4 cut(s)	15, 273, 350, 356
BstMBI	GATC	4 cut(s)	12, 270, 347, 353
BstX2I	RGATCY	1 cut(s)	347
BstYI	RGATCY	1 cut(s)	347
BsuRI	GGCC	2 cut(s)	256, 419
BtsI	GCAGTG	1 cut(s)	257
BtsIMutI	CAGTG	2 cut(s)	257, 522
BveI	ACCTGC	1 cut(s)	571
CciI	TCATGA	1 cut(s)	241
CfoI	GCGC	1 cut(s)	435
Cfr13I	GGNCC	1 cut(s)	417
Csp6I	GTAC	2 cut(s)	231, 301
CviAII	CATG	4 cut(s)	128, 242, 298, 377
CviJI	RGCY	8 cut(s)	34, 256, 340, 368, 419, 449, 543, 558
CviKI_1	RGCY	8 cut(s)	34, 256, 340, 368, 419, 449, 543, 558
CviQI	GTAC	2 cut(s)	231, 301
DdeI	CTNAG	2 cut(s)	110, 514
DpnI	GATC	4 cut(s)	14, 272, 349, 355
DpnII	GATC	4 cut(s)	12, 270, 347, 353
EaeI	YGGCCR	1 cut(s)	254
Ecl136II	GAGCTC	1 cut(s)	449
Eco24I	GRGCYC	1 cut(s)	451
Eco53kI	GAGCTC	1 cut(s)	449
EcoICRI	GAGCTC	1 cut(s)	449
EcoT38I	GRGCYC	1 cut(s)	451
FaeI	CATG	4 cut(s)	131, 245, 301, 380
FatI	CATG	4 cut(s)	127, 241, 297, 376
FblI	GTMKAC	1 cut(s)	527
FriOI	GRGCYC	1 cut(s)	451
FspBI	CTAG	1 cut(s)	282
FspI	TGCGCA	1 cut(s)	434
GlaI	GCGC	1 cut(s)	434
HaeIII	GGCC	2 cut(s)	256, 419
HhaI	GCGC	1 cut(s)	435
Hin1II	CATG	4 cut(s)	131, 245, 301, 380
Hin6I	GCGC	1 cut(s)	433
HinP1I	GCGC	1 cut(s)	433
HincII	GTYRAC	1 cut(s)	528
HindII	GTYRAC	1 cut(s)	528
HindIII	AAGCTT	1 cut(s)	338
HinfI	GANTC	1 cut(s)	53
HphI	GGTGA	3 cut(s)	161, 280, 299
Hpy166II	GTNNAC	1 cut(s)	528
Hpy188III	TCNNGA	3 cut(s)	242, 351, 400
Hpy8I	GTNNAC	1 cut(s)	528
HpyAV	CCTTC	3 cut(s)	69, 304, 397
HpyCH4III	ACNGT	1 cut(s)	29
HpyCH4V	TGCA	1 cut(s)	48
HpyF3I	CTNAG	2 cut(s)	110, 514
Hsp92II	CATG	4 cut(s)	131, 245, 301, 380
HspAI	GCGC	1 cut(s)	433
Kzo9I	GATC	4 cut(s)	12, 270, 347, 353
LpnPI	CCDG	4 cut(s)	95, 399, 516, 576
MaeI	CTAG	1 cut(s)	282
MalI	GATC	4 cut(s)	14, 272, 349, 355
MboI	GATC	4 cut(s)	12, 270, 347, 353
MboII	GAAGA	3 cut(s)	30, 476, 479
MflI	RGATCY	1 cut(s)	347
MhlI	GDGCHC	1 cut(s)	451
MluCI	AATT	5 cut(s)	358, 428, 471, 477, 549
MnlI	CCTC	3 cut(s)	433, 454, 523
MroXI	GAANNNNTTC	1 cut(s)	471
MseI	TTAA	3 cut(s)	192, 336, 410
MslI	CAYNNNNRTG	1 cut(s)	194
NdeII	GATC	4 cut(s)	12, 270, 347, 353
NlaIII	CATG	4 cut(s)	131, 245, 301, 380
NlaIV	GGNNCC	2 cut(s)	80, 418
NsbI	TGCGCA	1 cut(s)	434
PagI	TCATGA	1 cut(s)	241
PdmI	GAANNNNTTC	1 cut(s)	471
PfeI	GAWTC	1 cut(s)	53
PshBI	ATTAAT	1 cut(s)	192
Psp124BI	GAGCTC	1 cut(s)	451
PspN4I	GGNNCC	2 cut(s)	80, 418
PspPI	GGNCC	1 cut(s)	417
PsuI	RGATCY	1 cut(s)	347
RsaI	GTAC	2 cut(s)	232, 302
RsaNI	GTAC	2 cut(s)	231, 301
RseI	CAYNNNNRTG	1 cut(s)	194
SacI	GAGCTC	1 cut(s)	451
SalI	GTCGAC	1 cut(s)	526
SaqAI	TTAA	3 cut(s)	192, 336, 410
Sau3AI	GATC	4 cut(s)	12, 270, 347, 353
Sau96I	GGNCC	1 cut(s)	417
SduI	GDGCHC	1 cut(s)	451
SetI	ASST	9 cut(s)	36, 80, 151, 342, 389, 451, 515, 545, 565
SmiMI	CAYNNNNRTG	1 cut(s)	194
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
Sse9I	AATT	5 cut(s)	358, 428, 471, 477, 549
SsiI	CCGC	1 cut(s)	345
SspMI	CTAG	1 cut(s)	282
SstI	GAGCTC	1 cut(s)	451
TaaI	ACNGT	1 cut(s)	29
TaqI	TCGA	2 cut(s)	352, 527
TasI	AATT	5 cut(s)	358, 428, 471, 477, 549
TatI	WGTACW	2 cut(s)	230, 300
TfiI	GAWTC	1 cut(s)	53
Tru1I	TTAA	3 cut(s)	192, 336, 410
Tru9I	TTAA	3 cut(s)	192, 336, 410
TscAI	CASTG	2 cut(s)	257, 522
TspDTI	ATGAA	7 cut(s)	231, 258, 266, 286, 378, 379, 519
TspRI	CASTG	2 cut(s)	257, 522
VspI	ATTAAT	1 cut(s)	192
XapI	RAATTY	2 cut(s)	471, 477
XmiI	GTMKAC	1 cut(s)	527
XmnI	GAANNNNTTC	1 cut(s)	471
XspI	CTAG	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.