MD01G1181800.v1.1

f-box protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Forward (+)
28075535 .. 28077634
2100 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1181800.v1.1.491

Sequence Viewer

Length: 1434 bp
ATGGTGAAAAACGATGAACACATTCAACAACTGGGAACTAACATAACCGATCTTCCAAAGTCTTTCATTCACGATGTTCTACTGAAGCTCCCGACGAGGAACATTATTGCGTGCAAATGTGCATGCAAGACTTGGTATGGTCTAATTTCGGACCCCGAATTTGCTAAGTTACACTTTTCACAAGCACAGCCCTTTCCCATCATCCGGCCCCTGGATCCGTCCCGTGTGTCAAGAATCCTTTACTTGGCTGAGCTGGAAGACGGGTCTGGTTTTGATTTGAGGAAGTGCACCTGTAAGATTAACTATGATCGGTCTGGGGGTGGAAAGTCTTACATCCACATGAAACTCACCAAATACAAAATCCCGTTGCGCAATGCGGATGAGGTAATCGATAGCCAGGGCAATGTGGCGAGTTCGGTGGGTGGGAGGAACCATCATGGCAGGAAACGGAAGCCTTGTATCAGGATAAGGCCGAATCATCACAAGTACAAGGTGGTAAATTCGTGTAACGGCTTCCTTTGCCTGTCTAGTCCAGTCACTAATGACCCTGTTGTTGTCTGCAATCCGATCACCGGCGAGTTTATACACCTTCCGGAATCAGCCTCTAAGTGCGAGAAGGAAAAGGAATCGTATGATTGTGGATTTGGTTTCAATCCAAAGACAAATGAATATAAGGTGTTGAGAATATTTCAGCAAAGGGAACCCTACACTAAAGTGGCTGAGGTGCACACACTTGGGACAGACTCGTGGAAATTTGTTGGTCCTGCTCCATTCTTCCTATCCATGCTAGAACACACCACCTATGTGAAAGGAGCACTTTATTCGTTCTACTACGAGAGTTTAGGTTATAAAATATACTCTTTTGACTTGGAAACCGAAAAGTCTGAATCTGTTCCATCACCTCCTATTCGACTGGAGAAATCTCGTACTGTGAGCATGGGAGTTTTGGGAGATTGCCTTTGTTTGTGTGATTATGACGTTTTACGCATCAAGTTTTGGGTATTGGATGATCACGGTGCACAGAAAATATGGAGGCAGAAGATTTCTGTTTATACTGAAAATTGTGGAAGGTGGCCATATGGCTTATATAAATCGATGAACTACTTAAAGAATGGGGCTTTGTTGATGTTTCATTCCCGCACTAATTCCTTTTTCTACTATCACCCAAGAAGATATCGTAAGGCCATTTATCTTAAGATTCGTGGGTTTAAGTCGGATTTTGAAGCAATTAGTCATGTTCCAAGCTTGATTTCACTCAAGGACATTCTGGTGGGAAGTGATGTACAAGTCCTGCATATACATTCAAGGTGCGCAGAGTTGAGGCTGCTAGGAGAGTCCAAAGCTCTTTTTCTGGATGAAGAAATTGCGGAGTTGGCATCTGATTTTAATTCTTCCGACAGTGGTGGTGAAGATGAAGATGAAGATGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

478

Amino Acids

54.53

Weight (kDa)

8.2

Isoelectric Point (pI)

43.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 156 - 338 6.8e-09 KIB1-4 beta-propeller
FBA_1 PF07734 159 - 418 1.7e-22 F-box associated beta propeller domain
FBA_3 PF08268 159 - 391 3.4e-22 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 849
Acc16I TGCGCA 2 cut(s) 371, 1312
AccIII TCCGGA 1 cut(s) 592
AciI CCGC 3 cut(s) 377, 1138, 1367
AclWI GGATC 2 cut(s) 209, 222
AcoI YGGCCR 1 cut(s) 1073
AcsI RAATTY 3 cut(s) 158, 499, 752
AcuI CTGAAG 1 cut(s) 104
AfaI GTAC 3 cut(s) 488, 928, 1284
AfiI CCNNNNNNNGG 4 cut(s) 204, 211, 244, 572
AflII CTTAAG 1 cut(s) 1193
AgsI TTSAA 4 cut(s) 26, 652, 1223, 1305
AjnI CCWGG 2 cut(s) 210, 396
AjuI GAANNNNNNNTTGG 2 cut(s) 1234, 1266
AleI CACNNNNGTG 2 cut(s) 713, 803
AluBI AGCT 4 cut(s) 88, 253, 1245, 1343
AluI AGCT 4 cut(s) 88, 253, 1245, 1343
Alw21I GWGCWC 4 cut(s) 290, 729, 817, 1021
Alw44I GTGCAC 3 cut(s) 286, 725, 1017
AlwI GGATC 2 cut(s) 209, 222
Aor13HI TCCGGA 1 cut(s) 592
AoxI GGCC 4 cut(s) 206, 470, 1073, 1182
ApaLI GTGCAC 3 cut(s) 286, 725, 1017
ApeKI GCWGC 1 cut(s) 1324
ApoI RAATTY 3 cut(s) 158, 499, 752
ArsI GACNNNNNNTTYG 2 cut(s) 143, 175
Asp700I GAANNNNTTC 2 cut(s) 21, 891
AspLEI GCGC 2 cut(s) 372, 1313
AspS9I GGNCC 3 cut(s) 151, 207, 761
AsuHPI GGTGA 6 cut(s) 16, 340, 562, 891, 1154, 1418
AvaII GGWCC 2 cut(s) 151, 761
BaeGI GKGCMC 3 cut(s) 290, 729, 1021
BalI TGGCCA 1 cut(s) 1075
BamHI GGATCC 1 cut(s) 214
BauI CACGAG 1 cut(s) 745
BbsI GAAGAC 1 cut(s) 264
Bbv12I GWGCWC 4 cut(s) 290, 729, 817, 1021
BbvCI CCTCAGC 1 cut(s) 720
BbvI GCAGC 1 cut(s) 1311
BccI CCATC 3 cut(s) 206, 441, 904
BceAI ACGGC 1 cut(s) 526
BcgI CGANNNNNNTGC 2 cut(s) 804, 838
BciT130I CCWGG 2 cut(s) 212, 398
BclI TGATCA 1 cut(s) 1009
BfaI CTAG 3 cut(s) 528, 788, 1328
BfrI CTTAAG 1 cut(s) 1193
BisI GCNGC 1 cut(s) 1325
BlpI GCTNAGC 1 cut(s) 249
BlsI GCNGC 1 cut(s) 1326
Bme1390I CCNGG 2 cut(s) 212, 398
Bme18I GGWCC 2 cut(s) 151, 761
BmgT120I GGNCC 3 cut(s) 151, 207, 761
BmiI GGNNCC 5 cut(s) 153, 209, 216, 431, 702
BmrFI CCNGG 2 cut(s) 212, 398
BmrI ACTGGG 1 cut(s) 41
BmsI GCATC 2 cut(s) 996, 1385
BmuI ACTGGG 1 cut(s) 41
BpiI GAAGAC 1 cut(s) 264
BpmI CTGGAG 1 cut(s) 935
Bpu10I CCTNAGC 1 cut(s) 720
Bpu1102I GCTNAGC 1 cut(s) 249
BpuEI CTTGAG 1 cut(s) 1241
Bsa29I ATCGAT 2 cut(s) 390, 1094
BsaJI CCNNGG 2 cut(s) 210, 397
BsaWI WCCGGW 1 cut(s) 592
BsaXI ACNNNNNCTCC 2 cut(s) 72, 102
Bsc4I CCNNNNNNNGG 4 cut(s) 204, 211, 244, 572
Bse118I RCCGGY 1 cut(s) 572
Bse1I ACTGG 3 cut(s) 36, 533, 918
Bse3DI GCAATG 2 cut(s) 379, 409
BseAI TCCGGA 1 cut(s) 592
BseBI CCWGG 2 cut(s) 212, 398
BseCI ATCGAT 2 cut(s) 390, 1094
BseDI CCNNGG 2 cut(s) 210, 397
BseGI GGATG 5 cut(s) 201, 333, 385, 1012, 1360
BseLI CCNNNNNNNGG 4 cut(s) 204, 211, 244, 572
BseMI GCAATG 2 cut(s) 379, 409
BseMII CTCAG 2 cut(s) 240, 711
BseNI ACTGG 3 cut(s) 36, 533, 918
BseSI GKGCMC 3 cut(s) 290, 729, 1021
BseXI GCAGC 1 cut(s) 1311
BshFI GGCC 4 cut(s) 208, 472, 1075, 1184
BshVI ATCGAT 2 cut(s) 390, 1094
BsiHKAI GWGCWC 4 cut(s) 290, 729, 817, 1021
BsiSI CCGG 3 cut(s) 205, 573, 593
BslFI GGGAC 2 cut(s) 205, 751
BslI CCNNNNNNNGG 4 cut(s) 204, 211, 244, 572
BsmFI GGGAC 2 cut(s) 205, 751
BsnI GGCC 4 cut(s) 208, 472, 1075, 1184
Bsp1286I GDGCHC 4 cut(s) 290, 729, 817, 1021
Bsp13I TCCGGA 1 cut(s) 592
Bsp1407I TGTACA 1 cut(s) 1282
Bsp143I GATC 5 cut(s) 49, 214, 307, 567, 1009
Bsp1720I GCTNAGC 1 cut(s) 249
BspACI CCGC 3 cut(s) 377, 1138, 1367
BspANI GGCC 4 cut(s) 208, 472, 1075, 1184
BspCNI CTCAG 2 cut(s) 241, 712
BspDI ATCGAT 2 cut(s) 390, 1094
BspEI TCCGGA 1 cut(s) 592
BspLI GGNNCC 5 cut(s) 153, 209, 216, 431, 702
BspPI GGATC 2 cut(s) 209, 222
BspTI CTTAAG 1 cut(s) 1193
BsrDI GCAATG 2 cut(s) 379, 409
BsrFI RCCGGY 1 cut(s) 572
BsrGI TGTACA 1 cut(s) 1282
BsrI ACTGG 3 cut(s) 36, 533, 918
BssAI RCCGGY 1 cut(s) 572
BssECI CCNNGG 2 cut(s) 210, 397
BssMI GATC 5 cut(s) 49, 214, 307, 567, 1009
BssSI CACGAG 1 cut(s) 745
Bst2BI CACGAG 1 cut(s) 745
Bst2UI CCWGG 2 cut(s) 212, 398
Bst4CI ACNGT 3 cut(s) 931, 1016, 1400
BstAFI CTTAAG 1 cut(s) 1193
BstAUI TGTACA 1 cut(s) 1282
BstC8I GCNNGC 2 cut(s) 112, 124
BstDEI CTNAG 4 cut(s) 165, 249, 606, 720
BstF5I GGATG 5 cut(s) 201, 333, 385, 1012, 1360
BstHHI GCGC 2 cut(s) 372, 1313
BstKTI GATC 5 cut(s) 52, 217, 310, 570, 1012
BstMBI GATC 5 cut(s) 49, 214, 307, 567, 1009
BstMWI GCNNNNNNNGC 2 cut(s) 519, 1373
BstNI CCWGG 2 cut(s) 212, 398
BstNSI RCATGY 1 cut(s) 126
BstSCI CCNGG 2 cut(s) 210, 396
BstSLI GKGCMC 3 cut(s) 290, 729, 1021
BstV1I GCAGC 1 cut(s) 1311
BstV2I GAAGAC 1 cut(s) 264
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
Bsu15I ATCGAT 2 cut(s) 390, 1094
BsuRI GGCC 4 cut(s) 208, 472, 1075, 1184
BsuTUI ATCGAT 2 cut(s) 390, 1094
BtsCI GGATG 5 cut(s) 201, 333, 385, 1012, 1360
BtsIMutI CAGTG 1 cut(s) 1405
Cac8I GCNNGC 2 cut(s) 112, 124
CfoI GCGC 2 cut(s) 372, 1313
Cfr10I RCCGGY 1 cut(s) 572
Cfr13I GGNCC 3 cut(s) 151, 207, 761
ClaI ATCGAT 2 cut(s) 390, 1094
Csp6I GTAC 3 cut(s) 487, 927, 1283
CviAII CATG 6 cut(s) 123, 340, 437, 784, 937, 1235
CviQI GTAC 3 cut(s) 487, 927, 1283
DdeI CTNAG 4 cut(s) 165, 249, 606, 720
DpnI GATC 5 cut(s) 51, 216, 309, 569, 1011
DpnII GATC 5 cut(s) 49, 214, 307, 567, 1009
EaeI YGGCCR 1 cut(s) 1073
Eco32I GATATC 1 cut(s) 1175
Eco47I GGWCC 2 cut(s) 151, 761
Eco57I CTGAAG 1 cut(s) 104
EcoRII CCWGG 2 cut(s) 210, 396
EcoRV GATATC 1 cut(s) 1175
FaeI CATG 6 cut(s) 126, 343, 440, 787, 940, 1238
FalI AAGNNNNNCTT 4 cut(s) 158, 190, 801, 833
FaqI GGGAC 2 cut(s) 205, 751
FatI CATG 6 cut(s) 122, 339, 436, 783, 936, 1234
FauI CCCGC 1 cut(s) 1145
FauNDI CATATG 1 cut(s) 1078
FbaI TGATCA 1 cut(s) 1009
Fnu4HI GCNGC 1 cut(s) 1325
FokI GGATG 5 cut(s) 188, 320, 392, 1019, 1367
Fsp4HI GCNGC 1 cut(s) 1325
FspBI CTAG 3 cut(s) 528, 788, 1328
FspI TGCGCA 2 cut(s) 371, 1312
GlaI GCGC 2 cut(s) 371, 1312
GluI GCNGC 1 cut(s) 1325
GsuI CTGGAG 1 cut(s) 935
HaeIII GGCC 4 cut(s) 208, 472, 1075, 1184
HapII CCGG 3 cut(s) 205, 573, 593
HhaI GCGC 2 cut(s) 372, 1313
Hin1II CATG 6 cut(s) 126, 343, 440, 787, 940, 1238
Hin6I GCGC 2 cut(s) 370, 1311
HinP1I GCGC 2 cut(s) 370, 1311
HindIII AAGCTT 1 cut(s) 1243
HinfI GANTC 8 cut(s) 234, 475, 596, 626, 743, 887, 1198, 1334
HpaII CCGG 3 cut(s) 205, 573, 593
HphI GGTGA 6 cut(s) 16, 340, 562, 891, 1154, 1418
Hpy166II GTNNAC 3 cut(s) 288, 727, 1019
Hpy188I TCNGA 6 cut(s) 151, 567, 886, 1216, 1381, 1396
Hpy188III TCNNGA 6 cut(s) 71, 91, 231, 463, 593, 1352
Hpy8I GTNNAC 3 cut(s) 288, 727, 1019
Hpy99I CGWCG 1 cut(s) 97
HpyAV CCTTC 3 cut(s) 599, 610, 1062
HpyCH4III ACNGT 3 cut(s) 931, 1016, 1400
HpyCH4IV ACGT 1 cut(s) 978
HpyCH4V TGCA 8 cut(s) 114, 122, 126, 288, 561, 727, 1019, 1294
HpyF10VI GCNNNNNNNGC 2 cut(s) 519, 1373
HpyF3I CTNAG 4 cut(s) 165, 249, 606, 720
HpySE526I ACGT 1 cut(s) 978
Hsp92II CATG 6 cut(s) 126, 343, 440, 787, 940, 1238
HspAI GCGC 2 cut(s) 370, 1311
Kpn2I TCCGGA 1 cut(s) 592
Ksp22I TGATCA 1 cut(s) 1009
Kzo9I GATC 5 cut(s) 49, 214, 307, 567, 1009
LmnI GCTCC 3 cut(s) 93, 772, 812
Lsp1109I GCAGC 1 cut(s) 1311
LweI GCATC 2 cut(s) 996, 1385
MaeI CTAG 3 cut(s) 528, 788, 1328
MaeII ACGT 1 cut(s) 978
MaeIII GTNAC 3 cut(s) 168, 506, 535
MalI GATC 5 cut(s) 51, 216, 309, 569, 1011
MboI GATC 5 cut(s) 49, 214, 307, 567, 1009
MflI RGATCY 1 cut(s) 214
MhlI GDGCHC 4 cut(s) 290, 729, 817, 1021
MlsI TGGCCA 1 cut(s) 1075
MluCI AATT 9 cut(s) 144, 158, 499, 752, 1060, 1144, 1227, 1362, 1387
MluNI TGGCCA 1 cut(s) 1075
MlyI GAGTC 2 cut(s) 737, 1343
MmeI TCCRAC 2 cut(s) 1194, 1419
MnlI CCTC 9 cut(s) 90, 273, 376, 420, 613, 715, 912, 1026, 1314
Mox20I TGGCCA 1 cut(s) 1075
MroI TCCGGA 1 cut(s) 592
MroXI GAANNNNTTC 2 cut(s) 21, 891
MscI TGGCCA 1 cut(s) 1075
MseI TTAA 5 cut(s) 300, 1106, 1194, 1209, 1386
MslI CAYNNNNRTG 4 cut(s) 338, 713, 803, 1268
Msp20I TGGCCA 1 cut(s) 1075
MspCI CTTAAG 1 cut(s) 1193
MspI CCGG 3 cut(s) 205, 573, 593
MspR9I CCNGG 2 cut(s) 212, 398
MvaI CCWGG 2 cut(s) 212, 398
MwoI GCNNNNNNNGC 2 cut(s) 519, 1373
NdeI CATATG 1 cut(s) 1078
NdeII GATC 5 cut(s) 49, 214, 307, 567, 1009
NlaIII CATG 6 cut(s) 126, 343, 440, 787, 940, 1238
NlaIV GGNNCC 5 cut(s) 153, 209, 216, 431, 702
NmuCI GTSAC 1 cut(s) 535
NsbI TGCGCA 2 cut(s) 371, 1312
NspI RCATGY 1 cut(s) 126
OliI CACNNNNGTG 2 cut(s) 713, 803
PaeI GCATGC 1 cut(s) 126
PdmI GAANNNNTTC 2 cut(s) 21, 891
PfeI GAWTC 6 cut(s) 234, 475, 596, 626, 887, 1198
PkrI GCNGC 1 cut(s) 1326
PleI GAGTC 2 cut(s) 737, 1342
PpsI GAGTC 2 cut(s) 737, 1342
PsiI TTATAA 1 cut(s) 849
Psp6I CCWGG 2 cut(s) 210, 396
PspGI CCWGG 2 cut(s) 210, 396
PspN4I GGNNCC 5 cut(s) 153, 209, 216, 431, 702
PspPI GGNCC 3 cut(s) 151, 207, 761
PsuI RGATCY 1 cut(s) 214
RsaI GTAC 3 cut(s) 488, 928, 1284
RsaNI GTAC 3 cut(s) 487, 927, 1283
RseI CAYNNNNRTG 4 cut(s) 338, 713, 803, 1268
SaqAI TTAA 5 cut(s) 300, 1106, 1194, 1209, 1386
SatI GCNGC 1 cut(s) 1325
Sau3AI GATC 5 cut(s) 49, 214, 307, 567, 1009
Sau96I GGNCC 3 cut(s) 151, 207, 761
SchI GAGTC 2 cut(s) 737, 1343
ScrFI CCNGG 2 cut(s) 212, 398
SduI GDGCHC 4 cut(s) 290, 729, 817, 1021
SfaNI GCATC 2 cut(s) 996, 1385
SgrAI CRCCGGYG 1 cut(s) 572
SinI GGWCC 2 cut(s) 151, 761
SmiMI CAYNNNNRTG 4 cut(s) 338, 713, 803, 1268
SmlI CTYRAG 2 cut(s) 1193, 1256
SmoI CTYRAG 2 cut(s) 1193, 1256
SphI GCATGC 1 cut(s) 126
Sse9I AATT 9 cut(s) 144, 158, 499, 752, 1060, 1144, 1227, 1362, 1387
SsiI CCGC 3 cut(s) 377, 1138, 1367
SspI AATATT 1 cut(s) 687
SspMI CTAG 3 cut(s) 528, 788, 1328
StyD4I CCNGG 2 cut(s) 210, 396
TaaI ACNGT 3 cut(s) 931, 1016, 1400
TaiI ACGT 1 cut(s) 981
TaqI TCGA 3 cut(s) 390, 910, 1094
TaqII GACCGA 1 cut(s) 300
TasI AATT 9 cut(s) 144, 158, 499, 752, 1060, 1144, 1227, 1362, 1387
TatI WGTACW 2 cut(s) 486, 1282
TfiI GAWTC 6 cut(s) 234, 475, 596, 626, 887, 1198
Tru1I TTAA 5 cut(s) 300, 1106, 1194, 1209, 1386
Tru9I TTAA 5 cut(s) 300, 1106, 1194, 1209, 1386
TscAI CASTG 1 cut(s) 1405
TseFI GTSAC 1 cut(s) 535
TseI GCWGC 1 cut(s) 1324
Tsp45I GTSAC 1 cut(s) 535
TspDTI ATGAA 9 cut(s) 30, 55, 356, 681, 1112, 1121, 1371, 1428, 1434
TspGWI ACGGA 2 cut(s) 207, 463
TspRI CASTG 1 cut(s) 1405
Vha464I CTTAAG 1 cut(s) 1193
VneI GTGCAC 3 cut(s) 286, 725, 1017
VpaK11BI GGWCC 2 cut(s) 151, 761
XapI RAATTY 3 cut(s) 158, 499, 752
XceI RCATGY 1 cut(s) 126
XmnI GAANNNNTTC 2 cut(s) 21, 891
XspI CTAG 3 cut(s) 528, 788, 1328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.