Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0004545

Physical Location & Seq

Genomic Coordinates Reverse (-)

53220085 .. 53222367

Gene Structure 2283 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG374100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGACAGGAGTGATCTATTGGTTTTACCGTGAGCTTTCTTCGTCTTGCATAGATTCTTTTGACATTGACAATGGAAGGTTCCAGTCAGTTCCACCACTTCCTTTTGAACTGAGAACAAGTAATCATCATGTTAGCTTGGGAGTTTTAGGTGATTTTCTTTCTGTGTGTGAAGTTGCTTTCCTTGATGACATTAATGTGTGGGTAGTGATAGATAATGGTGGAGAGAAGTCTTGGATGAAAGAACTATGTATTTGTACTTTTAGTCATGAAAAGCAGTGGCCGTTTGGCTTATATCAACCGATGAAATACACAATGGAGGTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

108

Amino Acids

12.58

Weight (kDa)

4.66

Isoelectric Point (pI)

38.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_1	PF07734	2 - 83	2.1e-06	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004545)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g27870 FvH4_6g28330
malus_domestica	MD01G1181800.v1.1 MD17G1263300.v1.1
prunus_persica	Prupe.3G111700_v2.0.a1 Prupe.3G112000_v2.0.a1 Prupe.3G112200_v2.0.a1 Prupe.3G112200_v2.0.a1 Prupe.3G112400_v2.0.a1 Prupe.3G112400_v2.0.a1
pyrus_communis	pycom17g26350
rosa_chinensis	RchiOBHm_Chr2g0131131
rosa_laevigata	RLG00000019173 RLG00000019176
rosa_multiflora	Rmu_sc0003629.1_g000070
rosa_roxburghii	Rroxscaffold_2G00113130
rosa_rugosa	Rorug02G0327300
rosa_samantha	Rh2AG347600 Rh2AG348000 Rh2BG355200 Rh2BG355300 Rh2CG333800 Rh2CG333900 Rh2CG334000 Rh2CG335100 Rh2DG373000 Rh2DG373300 Rh2DG374100
rosa_wichuraiana	Rw2G028230 Rw2G028250 Rw2G028280 Rw2G028310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	278
AfaI	GTAC	1 cut(s)	256
AgsI	TTSAA	1 cut(s)	107
AluBI	AGCT	2 cut(s)	34, 135
AluI	AGCT	2 cut(s)	34, 135
AoxI	GGCC	1 cut(s)	278
AseI	ATTAAT	1 cut(s)	192
AsuHPI	GGTGA	1 cut(s)	161
BceAI	ACGGC	1 cut(s)	265
BmiI	GGNNCC	1 cut(s)	80
BsaXI	ACNNNNNCTCC	1 cut(s)	308
Bse1I	ACTGG	1 cut(s)	82
BseGI	GGATG	1 cut(s)	240
BseMII	CTCAG	1 cut(s)	101
BseNI	ACTGG	1 cut(s)	82
BshFI	GGCC	1 cut(s)	280
BsnI	GGCC	1 cut(s)	280
Bsp143I	GATC	1 cut(s)	12
BspANI	GGCC	1 cut(s)	280
BspCNI	CTCAG	1 cut(s)	102
BspHI	TCATGA	1 cut(s)	265
BspLI	GGNNCC	1 cut(s)	80
BsrI	ACTGG	1 cut(s)	82
BssMI	GATC	1 cut(s)	12
Bst4CI	ACNGT	1 cut(s)	29
BstDEI	CTNAG	1 cut(s)	110
BstF5I	GGATG	1 cut(s)	240
BstKTI	GATC	1 cut(s)	15
BstMBI	GATC	1 cut(s)	12
BsuRI	GGCC	1 cut(s)	280
BtsCI	GGATG	1 cut(s)	240
BtsI	GCAGTG	1 cut(s)	281
BtsIMutI	CAGTG	1 cut(s)	281
CciI	TCATGA	1 cut(s)	265
Csp6I	GTAC	1 cut(s)	255
CviAII	CATG	2 cut(s)	128, 266
CviJI	RGCY	4 cut(s)	34, 135, 280, 288
CviKI_1	RGCY	4 cut(s)	34, 135, 280, 288
CviQI	GTAC	1 cut(s)	255
DdeI	CTNAG	1 cut(s)	110
DpnI	GATC	1 cut(s)	14
DpnII	GATC	1 cut(s)	12
EaeI	YGGCCR	1 cut(s)	278
FaeI	CATG	2 cut(s)	131, 269
FaiI	YATR	5 cut(s)	50, 129, 247, 267, 292
FatI	CATG	2 cut(s)	127, 265
FokI	GGATG	1 cut(s)	247
HaeIII	GGCC	1 cut(s)	280
Hin1II	CATG	2 cut(s)	131, 269
HinfI	GANTC	1 cut(s)	53
HphI	GGTGA	1 cut(s)	161
Hpy188III	TCNNGA	1 cut(s)	266
HpyAV	CCTTC	1 cut(s)	69
HpyCH4III	ACNGT	1 cut(s)	29
HpyCH4V	TGCA	1 cut(s)	48
HpyF3I	CTNAG	1 cut(s)	110
Hsp92II	CATG	2 cut(s)	131, 269
Kzo9I	GATC	1 cut(s)	12
LpnPI	CCDG	1 cut(s)	95
MalI	GATC	1 cut(s)	14
MboI	GATC	1 cut(s)	12
MboII	GAAGA	1 cut(s)	30
MnlI	CCTC	1 cut(s)	310
MseI	TTAA	1 cut(s)	192
MslI	CAYNNNNRTG	1 cut(s)	194
NdeII	GATC	1 cut(s)	12
NlaIII	CATG	2 cut(s)	131, 269
NlaIV	GGNNCC	1 cut(s)	80
PagI	TCATGA	1 cut(s)	265
PfeI	GAWTC	1 cut(s)	53
PshBI	ATTAAT	1 cut(s)	192
PspN4I	GGNNCC	1 cut(s)	80
RsaI	GTAC	1 cut(s)	256
RsaNI	GTAC	1 cut(s)	255
RseI	CAYNNNNRTG	1 cut(s)	194
SaqAI	TTAA	1 cut(s)	192
Sau3AI	GATC	1 cut(s)	12
SetI	ASST	5 cut(s)	36, 80, 137, 151, 321
SmiMI	CAYNNNNRTG	1 cut(s)	194
TaaI	ACNGT	1 cut(s)	29
TatI	WGTACW	1 cut(s)	254
TfiI	GAWTC	1 cut(s)	53
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TscAI	CASTG	1 cut(s)	281
TspDTI	ATGAA	3 cut(s)	251, 282, 317
TspRI	CASTG	1 cut(s)	281
VspI	ATTAAT	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.