Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004545

Physical Location & Seq

Genomic Coordinates Reverse (-)

47799690 .. 47800839

Gene Structure 1150 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019176

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGAGCAAATTCAACACATGGATCCTTTTTGCAACAAATATTCCAAAATCTGTTATTCAAGATGTCCTACTAAGGCTCCCAAGTCCCAACTACGAGTATTATATATCATCTGCAAATGTGTATGCAAGACTTGGCATGATCTACTTTCGGAACCTGAGTTTGCTAAGCTTCATTTTGCACAAGCAGAGGCCTATCCATTGGTCTAGCCCTGGCATCCAACTCGTGTGTCATTGTGTCAAGACCCTTTACTTGCTTGAGCCTGAAGATAACTTGGTTTTTGGTTTAAAGGACTGCGAGTGCAACAACAGAAAATTGAATCAAGGCACTGCAAGGAAGAGCTGCATCAAGATTTTGTCAAATGAGCACAAGTACAAGGTGGTGAATTCCTGTAATGGATTTCTTTGCTTGTCTGAACCGATCTTCGGTGATCCTCTTGTTGTGTGCAATCCAATAACCAGGGAGTTTATACTCCTACCTGAAGCTTCTAAGCATACTAACAATGAAGAAGTATCTGTTGTGTGTAGATTTGGTTTTAGTCTGAAGACTAACCAATATAAGGTAATAAGAATTTTTGAAGAAGGAACACCTCGTCTGAGCCAAGTAGCTGAGGTACACACACTTGGGACTGGTTCATGGGAATGTGTTGGTAGTATTCCCTTTTCAAATGCTTCGTTCTCAAGATATAAGGCAGAGTTCACCGCCTATATGACAGGAGTGATCTTTTGGTTTTACCCTGAGCTTTATTCATCTTGCATAGATTCTTTTGACATTGACAATGGAAGGTTCCAGTCATTTCCACCACTTCCTTTTGAACTGAGAACAAGTAATCATCATGTTAGCTTGGGAGTTTTAGGTGATTTTCTTTCTGTGTGTGAAGTTGCTTTCCTTGATGACATTAATGTGTGGGTAATGATAGATAATGGTGGAGAGAAGTCTTGGATGAATGAGCTCTGTATTTGTACTTTTAGTCATGAAAGGCAGTGGCCATTTGGCTTATATCAACCGATGAAGTACATAAAACAATGGAGGTTTGGTGATGTTTCATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

350

Amino Acids

40.16

Weight (kDa)

6.74

Isoelectric Point (pI)

41.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_3	PF08268	115 - 323	2.2e-16	F-box associated beta propeller domain
FBA_1	PF07734	119 - 317	1.6e-18	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004545)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g27870 FvH4_6g28330
malus_domestica	MD01G1181800.v1.1 MD17G1263300.v1.1
prunus_persica	Prupe.3G111700_v2.0.a1 Prupe.3G112000_v2.0.a1 Prupe.3G112200_v2.0.a1 Prupe.3G112200_v2.0.a1 Prupe.3G112400_v2.0.a1 Prupe.3G112400_v2.0.a1
pyrus_communis	pycom17g26350
rosa_chinensis	RchiOBHm_Chr2g0131131
rosa_laevigata	RLG00000019173 RLG00000019176
rosa_multiflora	Rmu_sc0003629.1_g000070
rosa_roxburghii	Rroxscaffold_2G00113130
rosa_rugosa	Rorug02G0327300
rosa_samantha	Rh2AG347600 Rh2AG348000 Rh2BG355200 Rh2BG355300 Rh2CG333800 Rh2CG333900 Rh2CG334000 Rh2CG335100 Rh2DG373000 Rh2DG373300 Rh2DG374100
rosa_wichuraiana	Rw2G028230 Rw2G028250 Rw2G028280 Rw2G028310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	699
AclWI	GGATC	3 cut(s)	16, 29, 422
AcoI	YGGCCR	1 cut(s)	983
AcsI	RAATTY	3 cut(s)	8, 382, 567
AcuI	CTGAAG	3 cut(s)	282, 498, 560
AfaI	GTAC	4 cut(s)	371, 612, 961, 1013
AfiI	CCNNNNNNNGG	2 cut(s)	422, 556
AgsI	TTSAA	6 cut(s)	13, 59, 316, 575, 663, 812
AjnI	CCWGG	2 cut(s)	208, 455
AluBI	AGCT	7 cut(s)	168, 339, 482, 605, 739, 840, 949
AluI	AGCT	7 cut(s)	168, 339, 482, 605, 739, 840, 949
Alw21I	GWGCWC	2 cut(s)	366, 951
AlwI	GGATC	3 cut(s)	16, 29, 422
AoxI	GGCC	2 cut(s)	188, 983
ApeKI	GCWGC	1 cut(s)	339
ApoI	RAATTY	3 cut(s)	8, 382, 567
AseI	ATTAAT	1 cut(s)	897
AsuHPI	GGTGA	5 cut(s)	391, 437, 688, 866, 1046
BalI	TGGCCA	1 cut(s)	985
BamHI	GGATCC	1 cut(s)	21
BanII	GRGCYC	1 cut(s)	951
BauI	CACGAG	1 cut(s)	221
BbsI	GAAGAC	1 cut(s)	548
Bbv12I	GWGCWC	2 cut(s)	366, 951
BbvCI	CCTCAGC	1 cut(s)	606
BbvI	GCAGC	1 cut(s)	326
BcgI	CGANNNNNNTGC	2 cut(s)	202, 236
BciT130I	CCWGG	2 cut(s)	210, 457
BfaI	CTAG	2 cut(s)	204, 1048
BisI	GCNGC	1 cut(s)	340
BlpI	GCTNAGC	1 cut(s)	164
BlsI	GCNGC	1 cut(s)	341
Bme1390I	CCNGG	2 cut(s)	210, 457
BmiI	GGNNCC	4 cut(s)	23, 77, 152, 785
BmrFI	CCNGG	2 cut(s)	210, 457
BmsI	GCATC	2 cut(s)	222, 351
BpiI	GAAGAC	1 cut(s)	548
Bpu10I	CCTNAGC	2 cut(s)	606, 735
Bpu1102I	GCTNAGC	1 cut(s)	164
BpuEI	CTTGAG	2 cut(s)	275, 661
BsaJI	CCNNGG	2 cut(s)	208, 456
BsaXI	ACNNNNNCTCC	4 cut(s)	60, 90, 1018, 1048
Bsc4I	CCNNNNNNNGG	2 cut(s)	422, 556
Bse1I	ACTGG	2 cut(s)	631, 787
BseBI	CCWGG	2 cut(s)	210, 457
BseDI	CCNNGG	2 cut(s)	208, 456
BseGI	GGATG	2 cut(s)	213, 945
BseLI	CCNNNNNNNGG	2 cut(s)	422, 556
BseMII	CTCAG	5 cut(s)	146, 584, 597, 726, 806
BseNI	ACTGG	2 cut(s)	631, 787
BseXI	GCAGC	1 cut(s)	326
BshFI	GGCC	2 cut(s)	190, 985
BsiHKAI	GWGCWC	2 cut(s)	366, 951
BslFI	GGGAC	2 cut(s)	69, 637
BslI	CCNNNNNNNGG	2 cut(s)	422, 556
BsmFI	GGGAC	2 cut(s)	69, 637
BsnI	GGCC	2 cut(s)	190, 985
Bsp1286I	GDGCHC	2 cut(s)	366, 951
Bsp143I	GATC	5 cut(s)	21, 138, 417, 427, 717
Bsp1720I	GCTNAGC	1 cut(s)	164
BspACI	CCGC	1 cut(s)	699
BspANI	GGCC	2 cut(s)	190, 985
BspCNI	CTCAG	5 cut(s)	147, 585, 598, 727, 807
BspHI	TCATGA	1 cut(s)	970
BspLI	GGNNCC	4 cut(s)	23, 77, 152, 785
BspPI	GGATC	3 cut(s)	16, 29, 422
BspQI	GCTCTTC	1 cut(s)	329
BsrI	ACTGG	2 cut(s)	631, 787
BssECI	CCNNGG	2 cut(s)	208, 456
BssMI	GATC	5 cut(s)	21, 138, 417, 427, 717
BssSI	CACGAG	1 cut(s)	221
Bst2BI	CACGAG	1 cut(s)	221
Bst2UI	CCWGG	2 cut(s)	210, 457
Bst6I	CTCTTC	1 cut(s)	329
BstDEI	CTNAG	8 cut(s)	71, 155, 164, 486, 593, 606, 735, 815
BstF5I	GGATG	2 cut(s)	213, 945
BstKTI	GATC	5 cut(s)	24, 141, 420, 430, 720
BstMBI	GATC	5 cut(s)	21, 138, 417, 427, 717
BstNI	CCWGG	2 cut(s)	210, 457
BstSCI	CCNGG	2 cut(s)	208, 455
BstV1I	GCAGC	1 cut(s)	326
BstV2I	GAAGAC	1 cut(s)	548
BstX2I	RGATCY	1 cut(s)	21
BstYI	RGATCY	1 cut(s)	21
BsuRI	GGCC	2 cut(s)	190, 985
BtsCI	GGATG	2 cut(s)	213, 945
BtsI	GCAGTG	2 cut(s)	324, 986
BtsIMutI	CAGTG	2 cut(s)	324, 986
CciI	TCATGA	1 cut(s)	970
Csp6I	GTAC	4 cut(s)	370, 611, 960, 1012
CviAII	CATG	5 cut(s)	18, 136, 633, 833, 971
CviQI	GTAC	4 cut(s)	370, 611, 960, 1012
DdeI	CTNAG	8 cut(s)	71, 155, 164, 486, 593, 606, 735, 815
DpnI	GATC	5 cut(s)	23, 140, 419, 429, 719
DpnII	GATC	5 cut(s)	21, 138, 417, 427, 717
DraI	TTTAAA	1 cut(s)	285
EaeI	YGGCCR	1 cut(s)	983
Eam1104I	CTCTTC	1 cut(s)	329
EarI	CTCTTC	1 cut(s)	329
Ecl136II	GAGCTC	1 cut(s)	949
Eco147I	AGGCCT	1 cut(s)	190
Eco24I	GRGCYC	1 cut(s)	951
Eco53kI	GAGCTC	1 cut(s)	949
Eco57I	CTGAAG	3 cut(s)	282, 498, 560
EcoICRI	GAGCTC	1 cut(s)	949
EcoRI	GAATTC	1 cut(s)	382
EcoRII	CCWGG	2 cut(s)	208, 455
EcoT38I	GRGCYC	1 cut(s)	951
FaeI	CATG	5 cut(s)	21, 139, 636, 836, 974
FaqI	GGGAC	2 cut(s)	69, 637
FatI	CATG	5 cut(s)	17, 135, 632, 832, 970
Fnu4HI	GCNGC	1 cut(s)	340
FokI	GGATG	2 cut(s)	200, 952
FriOI	GRGCYC	1 cut(s)	951
Fsp4HI	GCNGC	1 cut(s)	340
FspBI	CTAG	2 cut(s)	204, 1048
GluI	GCNGC	1 cut(s)	340
HaeIII	GGCC	2 cut(s)	190, 985
Hin1II	CATG	5 cut(s)	21, 139, 636, 836, 974
HindIII	AAGCTT	2 cut(s)	166, 480
HinfI	GANTC	2 cut(s)	316, 758
HphI	GGTGA	5 cut(s)	391, 437, 688, 866, 1046
Hpy166II	GTNNAC	2 cut(s)	613, 696
Hpy188I	TCNGA	4 cut(s)	150, 412, 540, 594
Hpy188III	TCNNGA	5 cut(s)	59, 238, 346, 678, 971
Hpy8I	GTNNAC	2 cut(s)	613, 696
HpyAV	CCTTC	2 cut(s)	572, 774
HpyCH4V	TGCA	9 cut(s)	32, 113, 125, 178, 300, 329, 342, 444, 753
HpyF3I	CTNAG	8 cut(s)	71, 155, 164, 486, 593, 606, 735, 815
Hsp92II	CATG	5 cut(s)	21, 139, 636, 836, 974
Kzo9I	GATC	5 cut(s)	21, 138, 417, 427, 717
LguI	GCTCTTC	1 cut(s)	329
LmnI	GCTCC	1 cut(s)	81
Lsp1109I	GCAGC	1 cut(s)	326
LweI	GCATC	2 cut(s)	222, 351
MaeI	CTAG	2 cut(s)	204, 1048
MalI	GATC	5 cut(s)	23, 140, 419, 429, 719
MboI	GATC	5 cut(s)	21, 138, 417, 427, 717
MboII	GAAGA	6 cut(s)	275, 346, 412, 515, 553, 587
MflI	RGATCY	1 cut(s)	21
MhlI	GDGCHC	2 cut(s)	366, 951
MlsI	TGGCCA	1 cut(s)	985
MluCI	AATT	4 cut(s)	8, 311, 382, 567
MluNI	TGGCCA	1 cut(s)	985
MmeI	TCCRAC	1 cut(s)	241
MnlI	CCTC	5 cut(s)	180, 441, 597, 601, 1020
Mox20I	TGGCCA	1 cut(s)	985
MscI	TGGCCA	1 cut(s)	985
MseI	TTAA	2 cut(s)	284, 897
MslI	CAYNNNNRTG	2 cut(s)	637, 899
Msp20I	TGGCCA	1 cut(s)	985
MspR9I	CCNGG	2 cut(s)	210, 457
MvaI	CCWGG	2 cut(s)	210, 457
NdeII	GATC	5 cut(s)	21, 138, 417, 427, 717
NlaIII	CATG	5 cut(s)	21, 139, 636, 836, 974
NlaIV	GGNNCC	4 cut(s)	23, 77, 152, 785
PagI	TCATGA	1 cut(s)	970
PceI	AGGCCT	1 cut(s)	190
PciSI	GCTCTTC	1 cut(s)	329
PfeI	GAWTC	2 cut(s)	316, 758
PkrI	GCNGC	1 cut(s)	341
PshBI	ATTAAT	1 cut(s)	897
Psp124BI	GAGCTC	1 cut(s)	951
Psp6I	CCWGG	2 cut(s)	208, 455
PspGI	CCWGG	2 cut(s)	208, 455
PspN4I	GGNNCC	4 cut(s)	23, 77, 152, 785
PsuI	RGATCY	1 cut(s)	21
RsaI	GTAC	4 cut(s)	371, 612, 961, 1013
RsaNI	GTAC	4 cut(s)	370, 611, 960, 1012
RseI	CAYNNNNRTG	2 cut(s)	637, 899
SacI	GAGCTC	1 cut(s)	951
SapI	GCTCTTC	1 cut(s)	329
SaqAI	TTAA	2 cut(s)	284, 897
SatI	GCNGC	1 cut(s)	340
Sau3AI	GATC	5 cut(s)	21, 138, 417, 427, 717
ScrFI	CCNGG	2 cut(s)	210, 457
SduI	GDGCHC	2 cut(s)	366, 951
SfaNI	GCATC	2 cut(s)	222, 351
SmiMI	CAYNNNNRTG	2 cut(s)	637, 899
SmlI	CTYRAG	2 cut(s)	254, 676
SmoI	CTYRAG	2 cut(s)	254, 676
Sse9I	AATT	4 cut(s)	8, 311, 382, 567
SseBI	AGGCCT	1 cut(s)	190
SsiI	CCGC	1 cut(s)	699
SspI	AATATT	1 cut(s)	40
SspMI	CTAG	2 cut(s)	204, 1048
SstI	GAGCTC	1 cut(s)	951
StuI	AGGCCT	1 cut(s)	190
StyD4I	CCNGG	2 cut(s)	208, 455
TasI	AATT	4 cut(s)	8, 311, 382, 567
TatI	WGTACW	3 cut(s)	369, 959, 1011
TfiI	GAWTC	2 cut(s)	316, 758
Tru1I	TTAA	2 cut(s)	284, 897
Tru9I	TTAA	2 cut(s)	284, 897
TscAI	CASTG	2 cut(s)	331, 986
TseI	GCWGC	1 cut(s)	339
TspDTI	ATGAA	8 cut(s)	160, 516, 621, 735, 956, 987, 1022, 1032
TspRI	CASTG	2 cut(s)	331, 986
VspI	ATTAAT	1 cut(s)	897
XapI	RAATTY	3 cut(s)	8, 382, 567
XspI	CTAG	2 cut(s)	204, 1048

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.