Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0004545

Physical Location & Seq

Genomic Coordinates Reverse (-)

43901384 .. 43902013

Gene Structure 630 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG333800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGCGTGTGGCAAGAACTCTTTACTCAATAACTCTGGTTTTGATTTGGAAGACCATGCTGATGACGATGGCACATTAAGGTCTATGCCTTGGCCTGTCCGCATGAGTATTACCAATTGTAAAATTCCCTTGCGCAATCCTGAGGATGCATTCAACTACTACAATAAGCTCATTAATTATATGCTTAACAGGAAACGTGGTGCTAAAAGGAAACATAGATCTTGGATCAACAACATAAATCCACTCGATCAGAAGTACATGTTGGTGAATTCGTGTAACAGCTTGCTTTGCTTGGCTGAAGAATGCAATGGACCTTCTGTCGTGTGCAATCCAATAACTGGAGAGTTCATACACCTTCCTCAAGTTTTGAAGAATGAGAGCCACAAGAGATGTATTAGTCGAGGATCTGGTTTCAGTCCGAAGAATAACAAGTATAAGGTGATAAGAATCATTCATGAAGGCGCAGAGCATCCCATTCGGGTGGTTGATATAGAGATACACACACTTGGGACTCATTCATGGAAAGATGTTGGTAGTTCTCCCTTGGCCGAGCATATGGCATATCCCATCTATTTGAAAGGTGCTCTTTATTGGTATAACCGTATAACTACAGCAGTTTGGATTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

209

Amino Acids

23.88

Weight (kDa)

9.05

Isoelectric Point (pI)

52.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_1	PF07734	81 - 200	9.9e-14	F-box associated beta propeller domain
FBA_3	PF08268	85 - 202	2.9e-12	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004545)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g27870 FvH4_6g28330
malus_domestica	MD01G1181800.v1.1 MD17G1263300.v1.1
prunus_persica	Prupe.3G111700_v2.0.a1 Prupe.3G112000_v2.0.a1 Prupe.3G112200_v2.0.a1 Prupe.3G112200_v2.0.a1 Prupe.3G112400_v2.0.a1 Prupe.3G112400_v2.0.a1
pyrus_communis	pycom17g26350
rosa_chinensis	RchiOBHm_Chr2g0131131
rosa_laevigata	RLG00000019173 RLG00000019176
rosa_multiflora	Rmu_sc0003629.1_g000070
rosa_roxburghii	Rroxscaffold_2G00113130
rosa_rugosa	Rorug02G0327300
rosa_samantha	Rh2AG347600 Rh2AG348000 Rh2BG355200 Rh2BG355300 Rh2CG333800 Rh2CG333900 Rh2CG334000 Rh2CG335100 Rh2DG373000 Rh2DG373300 Rh2DG374100
rosa_wichuraiana	Rw2G028230 Rw2G028250 Rw2G028280 Rw2G028310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	134
AccB7I	CCANNNNNTGG	1 cut(s)	338
AciI	CCGC	1 cut(s)	100
AclWI	GGATC	2 cut(s)	233, 412
AcoI	YGGCCR	1 cut(s)	546
AcsI	RAATTY	2 cut(s)	123, 268
AcuI	CTGAAG	1 cut(s)	318
AfaI	GTAC	1 cut(s)	257
AfiI	CCNNNNNNNGG	1 cut(s)	338
AflIII	ACRYGT	1 cut(s)	258
AgsI	TTSAA	3 cut(s)	154, 370, 577
AhdI	GACNNNNNGTC	1 cut(s)	317
AjuI	GAANNNNNNNTTGG	2 cut(s)	245, 277
AluBI	AGCT	2 cut(s)	169, 282
AluI	AGCT	2 cut(s)	169, 282
Alw21I	GWGCWC	1 cut(s)	586
AlwI	GGATC	2 cut(s)	233, 412
AoxI	GGCC	2 cut(s)	92, 546
ApoI	RAATTY	2 cut(s)	123, 268
AseI	ATTAAT	1 cut(s)	174
AspLEI	GCGC	2 cut(s)	135, 464
AspS9I	GGNCC	1 cut(s)	311
AsuHPI	GGTGA	2 cut(s)	277, 451
AvaII	GGWCC	1 cut(s)	311
AxyI	CCTNAGG	1 cut(s)	141
BbsI	GAAGAC	1 cut(s)	57
Bbv12I	GWGCWC	1 cut(s)	586
BccI	CCATC	2 cut(s)	62, 575
BcgI	CGANNNNNNTGC	2 cut(s)	458, 492
BfmI	CTRYAG	1 cut(s)	609
BglII	AGATCT	1 cut(s)	218
Bme18I	GGWCC	1 cut(s)	311
BmeRI	GACNNNNNGTC	1 cut(s)	317
BmgT120I	GGNCC	1 cut(s)	311
BmsI	GCATC	2 cut(s)	136, 478
BpiI	GAAGAC	1 cut(s)	57
BpmI	CTGGAG	1 cut(s)	360
BpuEI	CTTGAG	1 cut(s)	345
BsaBI	GATNNNNATC	1 cut(s)	446
BsaJI	CCNNGG	2 cut(s)	89, 543
Bsc4I	CCNNNNNNNGG	1 cut(s)	338
Bse1I	ACTGG	1 cut(s)	343
Bse21I	CCTNAGG	1 cut(s)	141
Bse3DI	GCAATG	1 cut(s)	313
Bse8I	GATNNNNATC	1 cut(s)	446
BseDI	CCNNGG	2 cut(s)	89, 543
BseGI	GGATG	2 cut(s)	151, 469
BseJI	GATNNNNATC	1 cut(s)	446
BseLI	CCNNNNNNNGG	1 cut(s)	338
BseMI	GCAATG	1 cut(s)	313
BseMII	CTCAG	1 cut(s)	132
BseNI	ACTGG	1 cut(s)	343
BshFI	GGCC	2 cut(s)	94, 548
BsiHKAI	GWGCWC	1 cut(s)	586
BslFI	GGGAC	1 cut(s)	523
BslI	CCNNNNNNNGG	1 cut(s)	338
BsmFI	GGGAC	1 cut(s)	523
BsmI	GAATGC	2 cut(s)	149, 308
BsnI	GGCC	2 cut(s)	94, 548
Bsp1286I	GDGCHC	1 cut(s)	586
Bsp143I	GATC	4 cut(s)	218, 225, 247, 404
BspACI	CCGC	1 cut(s)	100
BspANI	GGCC	2 cut(s)	94, 548
BspCNI	CTCAG	1 cut(s)	133
BspHI	TCATGA	1 cut(s)	454
BspPI	GGATC	2 cut(s)	233, 412
BsrDI	GCAATG	1 cut(s)	313
BsrI	ACTGG	1 cut(s)	343
BssECI	CCNNGG	2 cut(s)	89, 543
BssMI	GATC	4 cut(s)	218, 225, 247, 404
BssT1I	CCWWGG	2 cut(s)	89, 543
Bst4CI	ACNGT	1 cut(s)	602
BstC8I	GCNNGC	1 cut(s)	284
BstDEI	CTNAG	1 cut(s)	141
BstF5I	GGATG	2 cut(s)	151, 469
BstHHI	GCGC	2 cut(s)	135, 464
BstKTI	GATC	4 cut(s)	221, 228, 250, 407
BstMBI	GATC	4 cut(s)	218, 225, 247, 404
BstMWI	GCNNNNNNNGC	1 cut(s)	288
BstNSI	RCATGY	1 cut(s)	262
BstSFI	CTRYAG	1 cut(s)	609
BstV2I	GAAGAC	1 cut(s)	57
BstX2I	RGATCY	2 cut(s)	218, 404
BstXI	CCANNNNNNTGG	1 cut(s)	481
BstYI	RGATCY	2 cut(s)	218, 404
Bsu36I	CCTNAGG	1 cut(s)	141
BsuRI	GGCC	2 cut(s)	94, 548
BtsCI	GGATG	2 cut(s)	151, 469
Cac8I	GCNNGC	1 cut(s)	284
CciI	TCATGA	1 cut(s)	454
CfoI	GCGC	2 cut(s)	135, 464
Cfr13I	GGNCC	1 cut(s)	311
Csp6I	GTAC	1 cut(s)	256
CviAII	CATG	5 cut(s)	56, 103, 259, 455, 519
CviJI	RGCY	6 cut(s)	94, 169, 282, 296, 381, 548
CviKI_1	RGCY	6 cut(s)	94, 169, 282, 296, 381, 548
CviQI	GTAC	1 cut(s)	256
DdeI	CTNAG	1 cut(s)	141
DpnI	GATC	4 cut(s)	220, 227, 249, 406
DpnII	GATC	4 cut(s)	218, 225, 247, 404
DriI	GACNNNNNGTC	1 cut(s)	317
EaeI	YGGCCR	1 cut(s)	546
Eam1105I	GACNNNNNGTC	1 cut(s)	317
Eco130I	CCWWGG	2 cut(s)	89, 543
Eco47I	GGWCC	1 cut(s)	311
Eco57I	CTGAAG	1 cut(s)	318
Eco81I	CCTNAGG	1 cut(s)	141
EcoRI	GAATTC	1 cut(s)	268
EcoT14I	CCWWGG	2 cut(s)	89, 543
EcoT22I	ATGCAT	1 cut(s)	151
ErhI	CCWWGG	2 cut(s)	89, 543
FaeI	CATG	5 cut(s)	59, 106, 262, 458, 522
FalI	AAGNNNNNCTT	2 cut(s)	570, 602
FaqI	GGGAC	1 cut(s)	523
FatI	CATG	5 cut(s)	55, 102, 258, 454, 518
FauNDI	CATATG	1 cut(s)	555
FokI	GGATG	2 cut(s)	158, 456
FspI	TGCGCA	1 cut(s)	134
GlaI	GCGC	2 cut(s)	134, 463
GsuI	CTGGAG	1 cut(s)	360
HaeIII	GGCC	2 cut(s)	94, 548
HhaI	GCGC	2 cut(s)	135, 464
Hin1II	CATG	5 cut(s)	59, 106, 262, 458, 522
Hin6I	GCGC	2 cut(s)	133, 462
HinP1I	GCGC	2 cut(s)	133, 462
HinfI	GANTC	2 cut(s)	447, 511
HphI	GGTGA	2 cut(s)	277, 451
Hpy188I	TCNGA	2 cut(s)	252, 420
Hpy188III	TCNNGA	2 cut(s)	140, 455
HpyAV	CCTTC	3 cut(s)	324, 365, 452
HpyCH4III	ACNGT	1 cut(s)	602
HpyCH4IV	ACGT	1 cut(s)	196
HpyCH4V	TGCA	4 cut(s)	149, 306, 327, 626
HpyF10VI	GCNNNNNNNGC	1 cut(s)	288
HpyF3I	CTNAG	1 cut(s)	141
HpySE526I	ACGT	1 cut(s)	196
Hsp92II	CATG	5 cut(s)	59, 106, 262, 458, 522
HspAI	GCGC	2 cut(s)	133, 462
Kzo9I	GATC	4 cut(s)	218, 225, 247, 404
LpnPI	CCDG	6 cut(s)	21, 108, 153, 175, 324, 393
LweI	GCATC	2 cut(s)	136, 478
MaeII	ACGT	1 cut(s)	196
MaeIII	GTNAC	1 cut(s)	275
MalI	GATC	4 cut(s)	220, 227, 249, 406
MboI	GATC	4 cut(s)	218, 225, 247, 404
MboII	GAAGA	4 cut(s)	62, 311, 382, 433
MfeI	CAATTG	1 cut(s)	115
MflI	RGATCY	2 cut(s)	218, 404
MhlI	GDGCHC	1 cut(s)	586
MluCI	AATT	4 cut(s)	115, 123, 175, 268
MlyI	GAGTC	1 cut(s)	505
MnlI	CCTC	3 cut(s)	136, 369, 395
Mph1103I	ATGCAT	1 cut(s)	151
MseI	TTAA	3 cut(s)	77, 174, 186
MslI	CAYNNNNRTG	3 cut(s)	60, 263, 479
MunI	CAATTG	1 cut(s)	115
Mva1269I	GAATGC	2 cut(s)	149, 308
MwoI	GCNNNNNNNGC	1 cut(s)	288
NdeI	CATATG	1 cut(s)	555
NdeII	GATC	4 cut(s)	218, 225, 247, 404
NlaIII	CATG	5 cut(s)	59, 106, 262, 458, 522
NmeAIII	GCCGAG	1 cut(s)	574
NsbI	TGCGCA	1 cut(s)	134
NsiI	ATGCAT	1 cut(s)	151
NspI	RCATGY	1 cut(s)	262
PagI	TCATGA	1 cut(s)	454
PciI	ACATGT	1 cut(s)	258
PctI	GAATGC	2 cut(s)	149, 308
PfeI	GAWTC	1 cut(s)	447
PflMI	CCANNNNNTGG	1 cut(s)	338
PleI	GAGTC	1 cut(s)	505
PpsI	GAGTC	1 cut(s)	505
PscI	ACATGT	1 cut(s)	258
PshBI	ATTAAT	1 cut(s)	174
PspPI	GGNCC	1 cut(s)	311
PsuI	RGATCY	2 cut(s)	218, 404
RsaI	GTAC	1 cut(s)	257
RsaNI	GTAC	1 cut(s)	256
RseI	CAYNNNNRTG	3 cut(s)	60, 263, 479
SaqAI	TTAA	3 cut(s)	77, 174, 186
Sau3AI	GATC	4 cut(s)	218, 225, 247, 404
Sau96I	GGNCC	1 cut(s)	311
SchI	GAGTC	1 cut(s)	505
SduI	GDGCHC	1 cut(s)	586
SetI	ASST	8 cut(s)	83, 171, 199, 284, 316, 357, 441, 583
SfaNI	GCATC	2 cut(s)	136, 478
SfcI	CTRYAG	1 cut(s)	609
SinI	GGWCC	1 cut(s)	311
SmiMI	CAYNNNNRTG	3 cut(s)	60, 263, 479
SmlI	CTYRAG	1 cut(s)	360
SmoI	CTYRAG	1 cut(s)	360
Sse9I	AATT	4 cut(s)	115, 123, 175, 268
SsiI	CCGC	1 cut(s)	100
StyI	CCWWGG	2 cut(s)	89, 543
TaaI	ACNGT	1 cut(s)	602
TaiI	ACGT	1 cut(s)	199
TaqI	TCGA	2 cut(s)	246, 400
TasI	AATT	4 cut(s)	115, 123, 175, 268
TatI	WGTACW	1 cut(s)	255
TfiI	GAWTC	1 cut(s)	447
Tru1I	TTAA	3 cut(s)	77, 174, 186
Tru9I	TTAA	3 cut(s)	77, 174, 186
TspDTI	ATGAA	4 cut(s)	337, 443, 471, 507
Van91I	CCANNNNNTGG	1 cut(s)	338
VpaK11BI	GGWCC	1 cut(s)	311
VspI	ATTAAT	1 cut(s)	174
XapI	RAATTY	2 cut(s)	123, 268
XceI	RCATGY	1 cut(s)	262
Zsp2I	ATGCAT	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.