Prupe.3G112200_v2.0.a1

F-box associated

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
9357188 .. 9359632
2445 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G112200.2

Sequence Viewer

Length: 1494 bp
ATGACCCATGCCAAACAAGCAGAGCCCTCTTTTCCGCCCAAGAGATTGGAGAATTCTTGGTGTGAAGCCATTGCATCAAAATCCACAGCTTCAGCCACCCCAATACGAAACACAGAAATGGGTCCTTTTATAACAGATGTTCCAAAGTCTGTCCTTCAAGATGTTATAATGAAGCTGCCACCAAGGAGCATTATCATGTGCAAAAGCGTCTGCAAGACTTGGTATTCTCTAATTTCGGACCCTGCATTTGCTAGGCTGCATTTCGCACAAGCAGAGGCCTATCCTATGGTCCGGCCCGTGGATGGAAGAAGCGTGTCAAGAAACCTTTTCTTGGTTGAGCCTGAAGATAGCTCTGGTTTTGATTTGAAGGACTATGATTGTAACCGGTCTCGTGTCCACATGAATCTTTCCAAATATAAATTCCCATTGTGTCATGCTGAGGAGTTACTCAATTACCATAGGAATGGCAATGTGATGCCTAGTCATGAAACTGAAAGAGAGGTTCACATGAAGATGACGAAAATTGATGACAACAACAACGAGGTGGATTGGGGTGAAAGTATCGCTTTCATGATGCAATATGATCACAACAACTACAACTTGGTAAATTCTTGTAACGGTTTGCTTTGCCTGTCTGATTATTTCGTGAAGTACCCTGCTGCTGTGTGCAATCCAATAACCGGCGAATTTATAAACCTTCCCCATGGTCCTCAACATGAGAAGGCAATGACTTTAATCGGTAGTGGATTAGGTTTCAGTCCGAGGACTAACGAATATAAGGTGGTGAGAATTCTTAAGGAACGGACACGTGATCCCAATAAGGTTGCTGAGATACACACCCTGGGAACAGGTTCATGGAAATCTGTTGGCGCTGCTCCCTGCTCAGACTCTCAGCAATCATTCCCCACTTGTGTGAAAGGAATGCTTTATTGGTTTTGCGGTGAGTGGACATGTGCTAGTGTGATTTCATTTGACTTGGATACTGAAGAGTTCGAATCGGTTCCATCACTGCCTTTTCGGGAGGGTGGTCGTGATGTGGGCATGGGAGATTTGGGAGGTAGCCTTTGTCTGTGTAAAATTGAGAGTTTTGAAATCAATGTGTGGGTAATGAATGATTCTGGTCCACAAAAACTTTGGATGAAGAAGATATCGATTTGTACTGCTTTTACTCGAAGTTGGCCAAGTGGCGTATACATACCCATGAAATACTTTGAGAATGATGGTCTGTTGATGTTTAATTCTCGTCTCAATGCCTTCTTTTACCATCACCCAGGAAACCACAGTCCATTCATTTATCTTAAGCTTCGAGAGATGAATTATTCAGCTTCTGAGGCAATTAGTCATGTTCCGAGCTTTATTTCGCTCAAGGATATTCTGGTGGGGAAGGATGTAGAAATACTGAATATCAATTCAAGGTGTGCAGTGTTGAAGCTGCCCGGAGAGACCGAAGCCCTATCTCTGGTGGAAGAAAATGCCAGTTCGATACGCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

498

Amino Acids

56.08

Weight (kDa)

6.13

Isoelectric Point (pI)

44.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 131, 167, 692
AccI GTMKAC 1 cut(s) 1191
AciI CCGC 2 cut(s) 35, 939
AclWI GGATC 1 cut(s) 806
AcoI YGGCCR 1 cut(s) 1178
AcsI RAATTY 5 cut(s) 52, 419, 607, 686, 789
AcuI CTGAAG 3 cut(s) 75, 363, 1005
AcvI CACGTG 1 cut(s) 809
AfaI GTAC 2 cut(s) 653, 1159
AfiI CCNNNNNNNGG 5 cut(s) 298, 302, 331, 680, 1459
AflII CTTAAG 2 cut(s) 794, 1298
AflIII ACRYGT 2 cut(s) 806, 950
AgeI ACCGGT 1 cut(s) 384
AgsI TTSAA 5 cut(s) 158, 367, 1091, 1413, 1429
AjnI CCWGG 2 cut(s) 840, 1270
AjuI GAANNNNNNNTTGG 4 cut(s) 404, 436, 913, 945
AleI CACNNNNGTG 1 cut(s) 911
AluBI AGCT 7 cut(s) 89, 175, 351, 1303, 1325, 1353, 1432
AluI AGCT 7 cut(s) 89, 175, 351, 1303, 1325, 1353, 1432
Alw26I GTCTC 3 cut(s) 393, 1250, 1436
AlwI GGATC 1 cut(s) 806
AlwNI CAGNNNCTG 1 cut(s) 1328
AoxI GGCC 3 cut(s) 276, 293, 1178
ApeKI GCWGC 5 cut(s) 175, 256, 659, 872, 1432
ApoI RAATTY 5 cut(s) 52, 419, 607, 686, 789
ArsI GACNNNNNNTTYG 2 cut(s) 230, 262
AsiGI ACCGGT 1 cut(s) 384
Asp700I GAANNNNTTC 2 cut(s) 850, 999
AspLEI GCGC 1 cut(s) 872
AspS9I GGNCC 6 cut(s) 122, 238, 289, 294, 707, 1121
AsuC2I CCSGG 1 cut(s) 1437
AsuHPI GGTGA 4 cut(s) 566, 796, 953, 1259
AsuII TTCGAA 1 cut(s) 993
AvaII GGWCC 5 cut(s) 122, 238, 289, 707, 1121
BalI TGGCCA 1 cut(s) 1180
BanII GRGCYC 1 cut(s) 27
BauI CACGAG 1 cut(s) 390
BbrPI CACGTG 1 cut(s) 809
BbvCI CCTCAGC 1 cut(s) 438
BbvI GCAGC 5 cut(s) 162, 243, 646, 859, 1419
BccI CCATC 4 cut(s) 296, 1012, 1214, 1272
BciT130I CCWGG 2 cut(s) 842, 1272
BciVI GTATCC 1 cut(s) 973
BclI TGATCA 1 cut(s) 583
BcnI CCSGG 1 cut(s) 1437
BcoDI GTCTC 3 cut(s) 393, 1250, 1436
BfaI CTAG 3 cut(s) 252, 480, 957
BfoI RGCGCY 1 cut(s) 873
BfrI CTTAAG 2 cut(s) 794, 1298
BfuI GTATCC 1 cut(s) 973
BisI GCNGC 5 cut(s) 176, 257, 660, 873, 1433
BlsI GCNGC 5 cut(s) 177, 258, 661, 874, 1434
Bme1390I CCNGG 3 cut(s) 842, 1272, 1437
Bme18I GGWCC 5 cut(s) 122, 238, 289, 707, 1121
BmgT120I GGNCC 6 cut(s) 122, 238, 289, 294, 707, 1121
BmiI GGNNCC 3 cut(s) 123, 240, 1002
BmrFI CCNGG 3 cut(s) 842, 1272, 1437
BmsI GCATC 3 cut(s) 83, 465, 564
Bpu10I CCTNAGC 1 cut(s) 438
Bpu14I TTCGAA 1 cut(s) 993
BpuEI CTTGAG 1 cut(s) 1349
BpuMI CCSGG 1 cut(s) 1437
Bsa29I ATCGAT 1 cut(s) 1151
BsaAI YACGTR 1 cut(s) 809
BsaI GGTCTC 2 cut(s) 393, 1436
BsaJI CCNNGG 7 cut(s) 182, 297, 703, 761, 840, 841, 1270
BsaWI WCCGGW 1 cut(s) 384
Bsc4I CCNNNNNNNGG 5 cut(s) 298, 302, 331, 680, 1459
Bse118I RCCGGY 2 cut(s) 384, 680
Bse1I ACTGG 1 cut(s) 1476
Bse3DI GCAATG 3 cut(s) 69, 475, 732
BseBI CCWGG 2 cut(s) 842, 1272
BseCI ATCGAT 1 cut(s) 1151
BseDI CCNNGG 7 cut(s) 182, 297, 703, 761, 840, 841, 1270
BseGI GGATG 3 cut(s) 307, 1143, 1393
BseLI CCNNNNNNNGG 5 cut(s) 298, 302, 331, 680, 1459
BseMI GCAATG 3 cut(s) 69, 475, 732
BseMII CTCAG 5 cut(s) 429, 819, 897, 905, 1320
BseNI ACTGG 1 cut(s) 1476
BseRI GAGGAG 1 cut(s) 455
BseXI GCAGC 5 cut(s) 162, 243, 646, 859, 1419
BsgI GTGCAG 1 cut(s) 1440
BshFI GGCC 3 cut(s) 278, 295, 1180
BshTI ACCGGT 1 cut(s) 384
BshVI ATCGAT 1 cut(s) 1151
BsiSI CCGG 4 cut(s) 292, 385, 681, 1437
BslI CCNNNNNNNGG 5 cut(s) 298, 302, 331, 680, 1459
BsmAI GTCTC 3 cut(s) 393, 1250, 1436
BsmBI CGTCTC 1 cut(s) 1250
BsmI GAATGC 1 cut(s) 927
BsnI GGCC 3 cut(s) 278, 295, 1180
Bso31I GGTCTC 2 cut(s) 393, 1436
Bsp119I TTCGAA 1 cut(s) 993
Bsp1286I GDGCHC 1 cut(s) 27
Bsp143I GATC 2 cut(s) 583, 811
Bsp19I CCATGG 1 cut(s) 703
BspACI CCGC 2 cut(s) 35, 939
BspANI GGCC 3 cut(s) 278, 295, 1180
BspCNI CTCAG 5 cut(s) 430, 820, 896, 904, 1321
BspDI ATCGAT 1 cut(s) 1151
BspHI TCATGA 2 cut(s) 484, 570
BspLI GGNNCC 3 cut(s) 123, 240, 1002
BspPI GGATC 1 cut(s) 806
BspT104I TTCGAA 1 cut(s) 993
BspTI CTTAAG 2 cut(s) 794, 1298
BspTNI GGTCTC 2 cut(s) 393, 1436
BsrDI GCAATG 3 cut(s) 69, 475, 732
BsrFI RCCGGY 2 cut(s) 384, 680
BsrI ACTGG 1 cut(s) 1476
BssAI RCCGGY 2 cut(s) 384, 680
BssECI CCNNGG 7 cut(s) 182, 297, 703, 761, 840, 841, 1270
BssMI GATC 2 cut(s) 583, 811
BssNAI GTATAC 1 cut(s) 1192
BssSI CACGAG 1 cut(s) 390
BssT1I CCWWGG 2 cut(s) 182, 703
Bst1107I GTATAC 1 cut(s) 1192
Bst2BI CACGAG 1 cut(s) 390
Bst2UI CCWGG 2 cut(s) 842, 1272
Bst4CI ACNGT 2 cut(s) 620, 1283
Bst6I CTCTTC 1 cut(s) 981
BstAFI CTTAAG 2 cut(s) 794, 1298
BstBAI YACGTR 1 cut(s) 809
BstBI TTCGAA 1 cut(s) 993
BstDEI CTNAG 5 cut(s) 438, 828, 883, 891, 1329
BstDSI CCRYGG 2 cut(s) 297, 703
BstF5I GGATG 3 cut(s) 307, 1143, 1393
BstH2I RGCGCY 1 cut(s) 873
BstHHI GCGC 1 cut(s) 872
BstKTI GATC 2 cut(s) 586, 814
BstMAI GTCTC 3 cut(s) 393, 1250, 1436
BstMBI GATC 2 cut(s) 583, 811
BstMWI GCNNNNNNNGC 2 cut(s) 17, 1331
BstNI CCWGG 2 cut(s) 842, 1272
BstNSI RCATGY 1 cut(s) 954
BstSCI CCNGG 3 cut(s) 840, 1270, 1435
BstV1I GCAGC 5 cut(s) 162, 243, 646, 859, 1419
BstXI CCANNNNNNTGG 2 cut(s) 46, 464
BstZ17I GTATAC 1 cut(s) 1192
Bsu15I ATCGAT 1 cut(s) 1151
BsuI GTATCC 1 cut(s) 973
BsuRI GGCC 3 cut(s) 278, 295, 1180
BsuTUI ATCGAT 1 cut(s) 1151
BtgI CCRYGG 2 cut(s) 297, 703
BtsCI GGATG 3 cut(s) 307, 1143, 1393
BtsI GCAGTG 2 cut(s) 1007, 1428
BtsIMutI CAGTG 2 cut(s) 1007, 1428
CaiI CAGNNNCTG 1 cut(s) 1328
CciI TCATGA 2 cut(s) 484, 570
CfoI GCGC 1 cut(s) 872
Cfr10I RCCGGY 2 cut(s) 384, 680
Cfr13I GGNCC 6 cut(s) 122, 238, 289, 294, 707, 1121
ClaI ATCGAT 1 cut(s) 1151
CseI GACGC 1 cut(s) 196
Csp6I GTAC 2 cut(s) 652, 1158
CspAI ACCGGT 1 cut(s) 384
CviQI GTAC 2 cut(s) 652, 1158
DdeI CTNAG 5 cut(s) 438, 828, 883, 891, 1329
DpnI GATC 2 cut(s) 585, 813
DpnII GATC 2 cut(s) 583, 811
EaeI YGGCCR 1 cut(s) 1178
Eam1104I CTCTTC 1 cut(s) 981
EarI CTCTTC 1 cut(s) 981
EciI GGCGGA 1 cut(s) 24
Eco130I CCWWGG 2 cut(s) 182, 703
Eco147I AGGCCT 1 cut(s) 278
Eco24I GRGCYC 1 cut(s) 27
Eco31I GGTCTC 2 cut(s) 393, 1436
Eco32I GATATC 1 cut(s) 1149
Eco47I GGWCC 5 cut(s) 122, 238, 289, 707, 1121
Eco57I CTGAAG 3 cut(s) 75, 363, 1005
Eco72I CACGTG 1 cut(s) 809
EcoO109I RGGNCCY 1 cut(s) 122
EcoRI GAATTC 2 cut(s) 52, 789
EcoRII CCWGG 2 cut(s) 840, 1270
EcoRV GATATC 1 cut(s) 1149
EcoT14I CCWWGG 2 cut(s) 182, 703
EcoT38I GRGCYC 1 cut(s) 27
ErhI CCWWGG 2 cut(s) 182, 703
Esp3I CGTCTC 1 cut(s) 1250
FalI AAGNNNNNCTT 4 cut(s) 550, 582, 909, 941
FbaI TGATCA 1 cut(s) 583
FblI GTMKAC 1 cut(s) 1191
Fnu4HI GCNGC 5 cut(s) 176, 257, 660, 873, 1433
FokI GGATG 3 cut(s) 314, 1150, 1400
FriOI GRGCYC 1 cut(s) 27
Fsp4HI GCNGC 5 cut(s) 176, 257, 660, 873, 1433
FspBI CTAG 3 cut(s) 252, 480, 957
GlaI GCGC 1 cut(s) 871
GluI GCNGC 5 cut(s) 176, 257, 660, 873, 1433
HaeII RGCGCY 1 cut(s) 873
HaeIII GGCC 3 cut(s) 278, 295, 1180
HapII CCGG 4 cut(s) 292, 385, 681, 1437
HgaI GACGC 1 cut(s) 196
HhaI GCGC 1 cut(s) 872
Hin6I GCGC 1 cut(s) 870
HinP1I GCGC 1 cut(s) 870
HindIII AAGCTT 1 cut(s) 1301
HinfI GANTC 4 cut(s) 403, 887, 995, 1115
HpaII CCGG 4 cut(s) 292, 385, 681, 1437
HphI GGTGA 4 cut(s) 566, 796, 953, 1259
Hpy166II GTNNAC 5 cut(s) 397, 505, 948, 1124, 1192
Hpy188I TCNGA 7 cut(s) 238, 637, 762, 886, 1330, 1350, 1493
Hpy188III TCNNGA 8 cut(s) 158, 318, 485, 571, 646, 1019, 1031, 1307
Hpy8I GTNNAC 5 cut(s) 397, 505, 948, 1124, 1192
HpyAV CCTTC 6 cut(s) 164, 361, 707, 715, 1264, 1378
HpyCH4III ACNGT 2 cut(s) 620, 1283
HpyCH4IV ACGT 1 cut(s) 808
HpyCH4V TGCA 8 cut(s) 74, 201, 213, 245, 259, 577, 669, 1421
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 1331
HpyF3I CTNAG 5 cut(s) 438, 828, 883, 891, 1329
HpySE526I ACGT 1 cut(s) 808
HspAI GCGC 1 cut(s) 870
Ksp22I TGATCA 1 cut(s) 583
Kzo9I GATC 2 cut(s) 583, 811
LmnI GCTCC 2 cut(s) 186, 880
Lsp1109I GCAGC 5 cut(s) 162, 243, 646, 859, 1419
LweI GCATC 3 cut(s) 83, 465, 564
MaeI CTAG 3 cut(s) 252, 480, 957
MaeII ACGT 1 cut(s) 808
MaeIII GTNAC 3 cut(s) 380, 444, 614
MalI GATC 2 cut(s) 585, 813
MboI GATC 2 cut(s) 583, 811
MboII GAAGA 7 cut(s) 318, 356, 523, 998, 1153, 1156, 1478
MhlI GDGCHC 1 cut(s) 27
MlsI TGGCCA 1 cut(s) 1180
MluNI TGGCCA 1 cut(s) 1180
MlyI GAGTC 1 cut(s) 881
Mox20I TGGCCA 1 cut(s) 1180
MroXI GAANNNNTTC 2 cut(s) 850, 999
MscI TGGCCA 1 cut(s) 1180
MseI TTAA 4 cut(s) 734, 795, 1236, 1299
MslI CAYNNNNRTG 6 cut(s) 116, 194, 462, 512, 911, 1199
Msp20I TGGCCA 1 cut(s) 1180
MspCI CTTAAG 2 cut(s) 794, 1298
MspI CCGG 4 cut(s) 292, 385, 681, 1437
MspR9I CCNGG 3 cut(s) 842, 1272, 1437
Mva1269I GAATGC 1 cut(s) 927
MvaI CCWGG 2 cut(s) 842, 1272
MwoI GCNNNNNNNGC 2 cut(s) 17, 1331
NciI CCSGG 1 cut(s) 1437
NcoI CCATGG 1 cut(s) 703
NdeII GATC 2 cut(s) 583, 811
NlaIV GGNNCC 3 cut(s) 123, 240, 1002
NspI RCATGY 1 cut(s) 954
NspV TTCGAA 1 cut(s) 993
OliI CACNNNNGTG 1 cut(s) 911
PagI TCATGA 2 cut(s) 484, 570
PasI CCCWGGG 1 cut(s) 841
PceI AGGCCT 1 cut(s) 278
PciI ACATGT 1 cut(s) 950
PctI GAATGC 1 cut(s) 927
PdmI GAANNNNTTC 2 cut(s) 850, 999
PfeI GAWTC 3 cut(s) 403, 995, 1115
PinAI ACCGGT 1 cut(s) 384
PkrI GCNGC 5 cut(s) 177, 258, 661, 874, 1434
PleI GAGTC 1 cut(s) 881
PmaCI CACGTG 1 cut(s) 809
PmlI CACGTG 1 cut(s) 809
PpsI GAGTC 1 cut(s) 881
Ppu21I YACGTR 1 cut(s) 809
PpuMI RGGWCCY 1 cut(s) 122
PscI ACATGT 1 cut(s) 950
PsiI TTATAA 3 cut(s) 131, 167, 692
Psp5II RGGWCCY 1 cut(s) 122
Psp6I CCWGG 2 cut(s) 840, 1270
PspCI CACGTG 1 cut(s) 809
PspGI CCWGG 2 cut(s) 840, 1270
PspN4I GGNNCC 3 cut(s) 123, 240, 1002
PspPI GGNCC 6 cut(s) 122, 238, 289, 294, 707, 1121
PspPPI RGGWCCY 1 cut(s) 122
PstNI CAGNNNCTG 1 cut(s) 1328
RsaI GTAC 2 cut(s) 653, 1159
RsaNI GTAC 2 cut(s) 652, 1158
RseI CAYNNNNRTG 6 cut(s) 116, 194, 462, 512, 911, 1199
SaqAI TTAA 4 cut(s) 734, 795, 1236, 1299
SatI GCNGC 5 cut(s) 176, 257, 660, 873, 1433
Sau3AI GATC 2 cut(s) 583, 811
Sau96I GGNCC 6 cut(s) 122, 238, 289, 294, 707, 1121
SchI GAGTC 1 cut(s) 881
ScrFI CCNGG 3 cut(s) 842, 1272, 1437
SduI GDGCHC 1 cut(s) 27
SfaNI GCATC 3 cut(s) 83, 465, 564
SfuI TTCGAA 1 cut(s) 993
SinI GGWCC 5 cut(s) 122, 238, 289, 707, 1121
SmiMI CAYNNNNRTG 6 cut(s) 116, 194, 462, 512, 911, 1199
SmlI CTYRAG 3 cut(s) 794, 1298, 1364
SmoI CTYRAG 3 cut(s) 794, 1298, 1364
SseBI AGGCCT 1 cut(s) 278
SsiI CCGC 2 cut(s) 35, 939
SspMI CTAG 3 cut(s) 252, 480, 957
StuI AGGCCT 1 cut(s) 278
StyD4I CCNGG 3 cut(s) 840, 1270, 1435
StyI CCWWGG 2 cut(s) 182, 703
TaaI ACNGT 2 cut(s) 620, 1283
TaiI ACGT 1 cut(s) 811
TaqI TCGA 5 cut(s) 993, 1151, 1171, 1306, 1481
TaqII GACCGA 1 cut(s) 1460
TatI WGTACW 1 cut(s) 1157
TfiI GAWTC 3 cut(s) 403, 995, 1115
Tru1I TTAA 4 cut(s) 734, 795, 1236, 1299
Tru9I TTAA 4 cut(s) 734, 795, 1236, 1299
TscAI CASTG 2 cut(s) 1014, 1428
TseI GCWGC 5 cut(s) 175, 256, 659, 872, 1432
TspGWI ACGGA 1 cut(s) 817
TspRI CASTG 2 cut(s) 1014, 1428
Vha464I CTTAAG 2 cut(s) 794, 1298
VpaK11BI GGWCC 5 cut(s) 122, 238, 289, 707, 1121
XapI RAATTY 5 cut(s) 52, 419, 607, 686, 789
XceI RCATGY 1 cut(s) 954
XcmI CCANNNNNNNNNTGG 1 cut(s) 1131
XmiI GTMKAC 1 cut(s) 1191
XmnI GAANNNNTTC 2 cut(s) 850, 999
XspI CTAG 3 cut(s) 252, 480, 957
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.