Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004545

Physical Location & Seq

Genomic Coordinates Forward (+)

9339829 .. 9341879

Gene Structure 2051 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G112000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1392 bp

ATGGGTCCTTTTATAACAGATGTTCCAAAGTCTGTCCTTCAAGATGTTATATTAAAGCTGCCAACAAAGAGCATTATCTTGTGCAAAAGCGTCTGCAAGACTTGGTATTCTCTAATTTCGGACCCTGCATTTGCTAGGCTGCATTTCGCACAAGCAGAGGCCTATCCTTTGGTCCGGCCCGTGGATGGAAGAAGCGTGTCAAGAAACCTTTTCTTGGTTGAGCCTGAAGATACCTTTGGTTTTGATTTGAAGGACCATGATTGTAACCGGTCTCGTGTCCACATGAATCTTTCCAAATATAAATTCCCATTGTGTCATGCTGAGGAGTTACTCAATTACCATAGGAATGGCAATGTGATGCCTAGTCATGAAACTGAAAGAGAGGTTCACATGAAGATAACGAATATTGATGACAACAACAACGAGGTGGATTGGGGTGAAGGTATCGCTTTCATGATGCAATATGATCACAACAACTACAACTTGGTAAATTCTTGTAACGGTTTGCTCTGCCTGTCTGATTTTTTCGTGAATTACCCTGCTGCTGTGTGCAATCCAATAACCGGCGAATTTATAAACCTTCCCTATGGTCCTAAACATGAGAAGGCAATGACTTTAATCGGTAGTGGATTAGGTTTCAGTCCGAGGACTAACGAATATAAGGTGGTGAGAATTCTTAAGGAACGGACACCTGATCCCAAGGTTGCTGAGATACACACCCTGGGAACAGGTTCATGGAAATCTGTTGGCACTGCTCCCTTTTCAGACGCTGAGCTATCATTCCCCACTTGTGTGAAAGGAATGCTTTATTGGTTTTGCGATAGGTGGACAGGTTGTAGTGTGATTTCATTTGACTTGGATACTGAAGAGTTCCAATCGGTTCCATCACTGCCTTTTATGGAGGATGATTGTGATGTGGGCATGGGAGATTTGGGAGGTAGTCTTTGTCTGTGTGAAACTGAGAGTTTTGAAATCAATGTGTGGGTAATGAATGATTCTGGTCCACAAAAACTTTGGATGAAGAAGTTATCAATTCGTACTGGTTTTTCTGGAAGGTGGCCAGATGACGTATACATACCCATGAAATACTTTGAGAATGATGGTCTGTTGATGTTTAATTCTCGTCTCAATGCCTTCTTTTACTATCACCCAGGAAACCATAGTCCATTCATTTATCTTAAGCTTCGAGAGATCAATAAATCTTCTTCTGAGGCAATTAGTCATGTTCCGAGCTTTATTTCGTTGAAGGATATTCTGGTGGGGAAGGATGTAGAAATACTGAATATAAATTCAAGGTGTGCAGTGTTGAAGCTGCCCGGAGAGACCGAAGCCCTATCTCTGGTGGAAGAAAATGCCAGTTCGAGATACTCTTCTGACAGTTGGGAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

464

Amino Acids

52.47

Weight (kDa)

5.21

Isoelectric Point (pI)

43.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004545)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g27870 FvH4_6g28330
malus_domestica	MD01G1181800.v1.1 MD17G1263300.v1.1
prunus_persica	Prupe.3G111700_v2.0.a1 Prupe.3G112000_v2.0.a1 Prupe.3G112200_v2.0.a1 Prupe.3G112200_v2.0.a1 Prupe.3G112400_v2.0.a1 Prupe.3G112400_v2.0.a1
pyrus_communis	pycom17g26350
rosa_chinensis	RchiOBHm_Chr2g0131131
rosa_laevigata	RLG00000019173 RLG00000019176
rosa_multiflora	Rmu_sc0003629.1_g000070
rosa_roxburghii	Rroxscaffold_2G00113130
rosa_rugosa	Rorug02G0327300
rosa_samantha	Rh2AG347600 Rh2AG348000 Rh2BG355200 Rh2BG355300 Rh2CG333800 Rh2CG333900 Rh2CG334000 Rh2CG335100 Rh2DG373000 Rh2DG373300 Rh2DG374100
rosa_wichuraiana	Rw2G028230 Rw2G028250 Rw2G028280 Rw2G028310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	14, 575
AccI	GTMKAC	1 cut(s)	1071
AclWI	GGATC	1 cut(s)	689
AcoI	YGGCCR	1 cut(s)	1058
AcsI	RAATTY	5 cut(s)	302, 490, 569, 672, 1288
AcuI	CTGAAG	2 cut(s)	246, 885
AfaI	GTAC	1 cut(s)	1039
AfiI	CCNNNNNNNGG	5 cut(s)	181, 185, 214, 563, 1339
AflII	CTTAAG	2 cut(s)	677, 1178
AgeI	ACCGGT	1 cut(s)	267
AgsI	TTSAA	6 cut(s)	41, 250, 971, 1246, 1293, 1309
AjnI	CCWGG	2 cut(s)	720, 1150
AjuI	GAANNNNNNNTTGG	6 cut(s)	219, 251, 287, 319, 793, 825
AleI	CACNNNNGTG	1 cut(s)	791
AluBI	AGCT	5 cut(s)	58, 775, 1183, 1233, 1312
AluI	AGCT	5 cut(s)	58, 775, 1183, 1233, 1312
Alw26I	GTCTC	3 cut(s)	276, 1130, 1316
AlwI	GGATC	1 cut(s)	689
AlwNI	CAGNNNCTG	1 cut(s)	770
AoxI	GGCC	3 cut(s)	159, 176, 1058
ApeKI	GCWGC	4 cut(s)	58, 139, 542, 1312
ApoI	RAATTY	5 cut(s)	302, 490, 569, 672, 1288
ArsI	GACNNNNNNTTYG	2 cut(s)	113, 145
AsiGI	ACCGGT	1 cut(s)	267
Asp700I	GAANNNNTTC	1 cut(s)	730
AspS9I	GGNCC	7 cut(s)	5, 121, 172, 177, 253, 590, 1001
AsuC2I	CCSGG	1 cut(s)	1317
AsuHPI	GGTGA	3 cut(s)	449, 679, 1139
AvaII	GGWCC	6 cut(s)	5, 121, 172, 253, 590, 1001
BalI	TGGCCA	1 cut(s)	1060
BauI	CACGAG	1 cut(s)	273
BbvCI	CCTCAGC	1 cut(s)	321
BbvI	GCAGC	4 cut(s)	45, 126, 529, 1299
BccI	CCATC	3 cut(s)	179, 892, 1094
BciT130I	CCWGG	2 cut(s)	722, 1152
BciVI	GTATCC	1 cut(s)	853
BclI	TGATCA	1 cut(s)	466
BcnI	CCSGG	1 cut(s)	1317
BcoDI	GTCTC	3 cut(s)	276, 1130, 1316
BfaI	CTAG	2 cut(s)	135, 363
BfrI	CTTAAG	2 cut(s)	677, 1178
BfuI	GTATCC	1 cut(s)	853
BisI	GCNGC	4 cut(s)	59, 140, 543, 1313
BlpI	GCTNAGC	1 cut(s)	771
BlsI	GCNGC	4 cut(s)	60, 141, 544, 1314
Bme1390I	CCNGG	3 cut(s)	722, 1152, 1317
Bme18I	GGWCC	6 cut(s)	5, 121, 172, 253, 590, 1001
BmgT120I	GGNCC	7 cut(s)	5, 121, 172, 177, 253, 590, 1001
BmiI	GGNNCC	3 cut(s)	6, 123, 882
BmrFI	CCNGG	3 cut(s)	722, 1152, 1317
BmsI	GCATC	2 cut(s)	348, 447
Bpu10I	CCTNAGC	1 cut(s)	321
Bpu1102I	GCTNAGC	1 cut(s)	771
BpuMI	CCSGG	1 cut(s)	1317
BsaI	GGTCTC	2 cut(s)	276, 1316
BsaJI	CCNNGG	6 cut(s)	180, 644, 699, 720, 721, 1150
BsaWI	WCCGGW	1 cut(s)	267
Bsc4I	CCNNNNNNNGG	5 cut(s)	181, 185, 214, 563, 1339
Bse118I	RCCGGY	2 cut(s)	267, 563
Bse1I	ACTGG	2 cut(s)	1045, 1356
Bse3DI	GCAATG	2 cut(s)	358, 615
BseBI	CCWGG	2 cut(s)	722, 1152
BseDI	CCNNGG	6 cut(s)	180, 644, 699, 720, 721, 1150
BseGI	GGATG	4 cut(s)	190, 910, 1023, 1273
BseLI	CCNNNNNNNGG	5 cut(s)	181, 185, 214, 563, 1339
BseMI	GCAATG	2 cut(s)	358, 615
BseMII	CTCAG	5 cut(s)	312, 699, 762, 951, 1200
BseNI	ACTGG	2 cut(s)	1045, 1356
BseRI	GAGGAG	1 cut(s)	338
BseXI	GCAGC	4 cut(s)	45, 126, 529, 1299
BsgI	GTGCAG	1 cut(s)	1320
BshFI	GGCC	3 cut(s)	161, 178, 1060
BshTI	ACCGGT	1 cut(s)	267
BsiSI	CCGG	4 cut(s)	175, 268, 564, 1317
BslI	CCNNNNNNNGG	5 cut(s)	181, 185, 214, 563, 1339
BsmAI	GTCTC	3 cut(s)	276, 1130, 1316
BsmBI	CGTCTC	1 cut(s)	1130
BsmI	GAATGC	1 cut(s)	807
BsnI	GGCC	3 cut(s)	161, 178, 1060
Bso31I	GGTCTC	2 cut(s)	276, 1316
Bsp143I	GATC	3 cut(s)	466, 694, 1191
Bsp1720I	GCTNAGC	1 cut(s)	771
BspANI	GGCC	3 cut(s)	161, 178, 1060
BspCNI	CTCAG	5 cut(s)	313, 700, 763, 952, 1201
BspHI	TCATGA	2 cut(s)	367, 453
BspLI	GGNNCC	3 cut(s)	6, 123, 882
BspPI	GGATC	1 cut(s)	689
BspTI	CTTAAG	2 cut(s)	677, 1178
BspTNI	GGTCTC	2 cut(s)	276, 1316
BsrDI	GCAATG	2 cut(s)	358, 615
BsrFI	RCCGGY	2 cut(s)	267, 563
BsrI	ACTGG	2 cut(s)	1045, 1356
BssAI	RCCGGY	2 cut(s)	267, 563
BssECI	CCNNGG	6 cut(s)	180, 644, 699, 720, 721, 1150
BssMI	GATC	3 cut(s)	466, 694, 1191
BssNAI	GTATAC	1 cut(s)	1072
BssSI	CACGAG	1 cut(s)	273
BssT1I	CCWWGG	1 cut(s)	699
Bst1107I	GTATAC	1 cut(s)	1072
Bst2BI	CACGAG	1 cut(s)	273
Bst2UI	CCWGG	2 cut(s)	722, 1152
Bst4CI	ACNGT	2 cut(s)	503, 1379
Bst6I	CTCTTC	2 cut(s)	861, 1375
BstAFI	CTTAAG	2 cut(s)	677, 1178
BstDEI	CTNAG	5 cut(s)	321, 708, 771, 960, 1209
BstDSI	CCRYGG	1 cut(s)	180
BstF5I	GGATG	4 cut(s)	190, 910, 1023, 1273
BstKTI	GATC	3 cut(s)	469, 697, 1194
BstMAI	GTCTC	3 cut(s)	276, 1130, 1316
BstMBI	GATC	3 cut(s)	466, 694, 1191
BstNI	CCWGG	2 cut(s)	722, 1152
BstSCI	CCNGG	3 cut(s)	720, 1150, 1315
BstV1I	GCAGC	4 cut(s)	45, 126, 529, 1299
BstXI	CCANNNNNNTGG	1 cut(s)	347
BstZ17I	GTATAC	1 cut(s)	1072
BsuI	GTATCC	1 cut(s)	853
BsuRI	GGCC	3 cut(s)	161, 178, 1060
BtgI	CCRYGG	1 cut(s)	180
BtsCI	GGATG	4 cut(s)	190, 910, 1023, 1273
BtsI	GCAGTG	3 cut(s)	750, 887, 1308
BtsIMutI	CAGTG	3 cut(s)	750, 887, 1308
CaiI	CAGNNNCTG	1 cut(s)	770
CciI	TCATGA	2 cut(s)	367, 453
Cfr10I	RCCGGY	2 cut(s)	267, 563
Cfr13I	GGNCC	7 cut(s)	5, 121, 172, 177, 253, 590, 1001
CseI	GACGC	2 cut(s)	79, 776
Csp6I	GTAC	1 cut(s)	1038
CspAI	ACCGGT	1 cut(s)	267
CviQI	GTAC	1 cut(s)	1038
DdeI	CTNAG	5 cut(s)	321, 708, 771, 960, 1209
DpnI	GATC	3 cut(s)	468, 696, 1193
DpnII	GATC	3 cut(s)	466, 694, 1191
EaeI	YGGCCR	1 cut(s)	1058
Eam1104I	CTCTTC	2 cut(s)	861, 1375
EarI	CTCTTC	2 cut(s)	861, 1375
Eco130I	CCWWGG	1 cut(s)	699
Eco147I	AGGCCT	1 cut(s)	161
Eco31I	GGTCTC	2 cut(s)	276, 1316
Eco47I	GGWCC	6 cut(s)	5, 121, 172, 253, 590, 1001
Eco57I	CTGAAG	2 cut(s)	246, 885
EcoO109I	RGGNCCY	1 cut(s)	5
EcoRI	GAATTC	1 cut(s)	672
EcoRII	CCWGG	2 cut(s)	720, 1150
EcoT14I	CCWWGG	1 cut(s)	699
ErhI	CCWWGG	1 cut(s)	699
Esp3I	CGTCTC	1 cut(s)	1130
FalI	AAGNNNNNCTT	2 cut(s)	789, 821
FbaI	TGATCA	1 cut(s)	466
FblI	GTMKAC	1 cut(s)	1071
Fnu4HI	GCNGC	4 cut(s)	59, 140, 543, 1313
FokI	GGATG	4 cut(s)	197, 917, 1030, 1280
Fsp4HI	GCNGC	4 cut(s)	59, 140, 543, 1313
FspBI	CTAG	2 cut(s)	135, 363
GluI	GCNGC	4 cut(s)	59, 140, 543, 1313
HaeIII	GGCC	3 cut(s)	161, 178, 1060
HapII	CCGG	4 cut(s)	175, 268, 564, 1317
HgaI	GACGC	2 cut(s)	79, 776
HindIII	AAGCTT	1 cut(s)	1181
HinfI	GANTC	2 cut(s)	286, 995
HpaII	CCGG	4 cut(s)	175, 268, 564, 1317
HphI	GGTGA	3 cut(s)	449, 679, 1139
Hpy166II	GTNNAC	5 cut(s)	280, 388, 828, 1004, 1072
Hpy188I	TCNGA	7 cut(s)	121, 520, 645, 766, 1210, 1230, 1375
Hpy188III	TCNNGA	8 cut(s)	41, 201, 368, 454, 529, 1050, 1187, 1362
Hpy8I	GTNNAC	5 cut(s)	280, 388, 828, 1004, 1072
HpyAV	CCTTC	9 cut(s)	47, 244, 434, 590, 598, 1047, 1144, 1240, 1258
HpyCH4III	ACNGT	2 cut(s)	503, 1379
HpyCH4IV	ACGT	1 cut(s)	1068
HpyCH4V	TGCA	7 cut(s)	84, 96, 128, 142, 460, 552, 1301
HpyF3I	CTNAG	5 cut(s)	321, 708, 771, 960, 1209
HpySE526I	ACGT	1 cut(s)	1068
Ksp22I	TGATCA	1 cut(s)	466
Kzo9I	GATC	3 cut(s)	466, 694, 1191
LmnI	GCTCC	1 cut(s)	760
Lsp1109I	GCAGC	4 cut(s)	45, 126, 529, 1299
LweI	GCATC	2 cut(s)	348, 447
MaeI	CTAG	2 cut(s)	135, 363
MaeII	ACGT	1 cut(s)	1068
MaeIII	GTNAC	3 cut(s)	263, 327, 497
MalI	GATC	3 cut(s)	468, 696, 1193
MboI	GATC	3 cut(s)	466, 694, 1191
MboII	GAAGA	9 cut(s)	201, 239, 406, 878, 1033, 1194, 1197, 1358, 1362
MlsI	TGGCCA	1 cut(s)	1060
MluNI	TGGCCA	1 cut(s)	1060
MnlI	CCTC	8 cut(s)	151, 316, 376, 418, 639, 895, 929, 1204
Mox20I	TGGCCA	1 cut(s)	1060
MroXI	GAANNNNTTC	1 cut(s)	730
MscI	TGGCCA	1 cut(s)	1060
MseI	TTAA	5 cut(s)	53, 617, 678, 1116, 1179
MslI	CAYNNNNRTG	3 cut(s)	345, 791, 1079
Msp20I	TGGCCA	1 cut(s)	1060
MspCI	CTTAAG	2 cut(s)	677, 1178
MspI	CCGG	4 cut(s)	175, 268, 564, 1317
MspR9I	CCNGG	3 cut(s)	722, 1152, 1317
Mva1269I	GAATGC	1 cut(s)	807
MvaI	CCWGG	2 cut(s)	722, 1152
NciI	CCSGG	1 cut(s)	1317
NdeII	GATC	3 cut(s)	466, 694, 1191
NlaIV	GGNNCC	3 cut(s)	6, 123, 882
OliI	CACNNNNGTG	1 cut(s)	791
PagI	TCATGA	2 cut(s)	367, 453
PasI	CCCWGGG	1 cut(s)	721
PceI	AGGCCT	1 cut(s)	161
PctI	GAATGC	1 cut(s)	807
PdmI	GAANNNNTTC	1 cut(s)	730
PfeI	GAWTC	2 cut(s)	286, 995
PinAI	ACCGGT	1 cut(s)	267
PkrI	GCNGC	4 cut(s)	60, 141, 544, 1314
PpuMI	RGGWCCY	1 cut(s)	5
PsiI	TTATAA	2 cut(s)	14, 575
Psp5II	RGGWCCY	1 cut(s)	5
Psp6I	CCWGG	2 cut(s)	720, 1150
PspGI	CCWGG	2 cut(s)	720, 1150
PspN4I	GGNNCC	3 cut(s)	6, 123, 882
PspPI	GGNCC	7 cut(s)	5, 121, 172, 177, 253, 590, 1001
PspPPI	RGGWCCY	1 cut(s)	5
PstNI	CAGNNNCTG	1 cut(s)	770
RsaI	GTAC	1 cut(s)	1039
RsaNI	GTAC	1 cut(s)	1038
RseI	CAYNNNNRTG	3 cut(s)	345, 791, 1079
SaqAI	TTAA	5 cut(s)	53, 617, 678, 1116, 1179
SatI	GCNGC	4 cut(s)	59, 140, 543, 1313
Sau3AI	GATC	3 cut(s)	466, 694, 1191
Sau96I	GGNCC	7 cut(s)	5, 121, 172, 177, 253, 590, 1001
ScrFI	CCNGG	3 cut(s)	722, 1152, 1317
SfaNI	GCATC	2 cut(s)	348, 447
SinI	GGWCC	6 cut(s)	5, 121, 172, 253, 590, 1001
SmiMI	CAYNNNNRTG	3 cut(s)	345, 791, 1079
SmlI	CTYRAG	2 cut(s)	677, 1178
SmoI	CTYRAG	2 cut(s)	677, 1178
SseBI	AGGCCT	1 cut(s)	161
SspI	AATATT	1 cut(s)	406
SspMI	CTAG	2 cut(s)	135, 363
StuI	AGGCCT	1 cut(s)	161
StyD4I	CCNGG	3 cut(s)	720, 1150, 1315
StyI	CCWWGG	1 cut(s)	699
TaaI	ACNGT	2 cut(s)	503, 1379
TaiI	ACGT	1 cut(s)	1071
TaqI	TCGA	2 cut(s)	1186, 1361
TaqII	GACCGA	1 cut(s)	1340
TfiI	GAWTC	2 cut(s)	286, 995
Tru1I	TTAA	5 cut(s)	53, 617, 678, 1116, 1179
Tru9I	TTAA	5 cut(s)	53, 617, 678, 1116, 1179
TscAI	CASTG	3 cut(s)	757, 894, 1308
TseI	GCWGC	4 cut(s)	58, 139, 542, 1312
TspGWI	ACGGA	1 cut(s)	700
TspRI	CASTG	3 cut(s)	757, 894, 1308
Vha464I	CTTAAG	2 cut(s)	677, 1178
VpaK11BI	GGWCC	6 cut(s)	5, 121, 172, 253, 590, 1001
XapI	RAATTY	5 cut(s)	302, 490, 569, 672, 1288
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1011
XmiI	GTMKAC	1 cut(s)	1071
XmnI	GAANNNNTTC	1 cut(s)	730
XspI	CTAG	2 cut(s)	135, 363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.