FvH4_6g33230

Protein GAMETE EXPRESSED

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
26319371 .. 26321441
2071 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g33230.t1

Sequence Viewer

Length: 1626 bp
ATGGAAGGTCATAATGATGACCCCAAGGCAATCAGGCTTGTTGAAGATGCAGAGAAGAAGTTGGTAGGTCCTAACTCTTGTTGGCAAAATGCTTACCGGCATCTCTTTTCGGGGTGCTCGGAGGTGCATGCCGTTGAAGAGAAGCGCTCAAGATTCGCTTGGCATCTAAGTGATTGCTTTCAGAAGGACTCAGCAAGGCCTCCTTTCCCTGCGTGTGACCCGAAATCTGCAATGTATAAGTGCCTGAAAACTTTGAACAATGATCAGCACAAGGTCTATTTGGAATTCTACCTTGAAACCAACTCAATATGCCATCAGTTGCAGGCTCGCGCATTCAAGTATGAAACAGAGAGACTTGTGAATGAACTTAAAAATTCAGCTCAGTATGCAGAAGACAAGTTGGAAATAATTGAAGAGAAGGCAGAGCAGCTACTGCAGGGGTCGAGTGAAATATTTGATTCTTTGAATTCAATTGATCTTCGAACACAGCAAGTTGCTCAGACTGCAGAGAATGTGGAAGATCATATCGATGTGGTGTTGAAGCATTCTACAGAAGTTTATGAGCAATCAAGGAAAATCCAAGAATCTCAATCCGAGCTGCAAGAAGGACAAGTAGAAATGAAGAAGAACTTGAAGGAAGGAATGGCAATGCTGCAAGATTCATATATTCATTTGGGACAAGAAATCGATAATTTGAAAACTGAGGCTGTTGAAATTGAAAAAGAGATCATCAAAGTTGGAGACCAAATGTACTCTAGGATGGAAAATCTGCAAGTCAAAGCAGATGACATTGGGAATATGGCAGGGCTCTCTTTGGACAAGCAAAAGCAACTTCTAGATGGACAAACAACAGCTCTCAAGGAGTTAGACTTTTTGACCAAATTTCAATCTGAGGCATTGGAAGAGAGCAGGAGAACCCTACAACGGTTAACCGAATATGGCCAGAGACAACAAGAAGAGCTTCTTCAGAAGCAAATACAGCTTCAAAAAGTTCATGATCACCTGATGGAAAACTCAAAGTCAATGTTGGAGGCACAGGAATCTTTTGAATCAAAGCAAGCCAGCATGTTCGCTGCACTAGACAAGCTATTGGCTTTGCACAATGCTATGCTGCTTGAATCACGCGTGATCAAAGCTTTCTTTATTTACTCTATATCAATCTTTGTCATCTACATGTTCACAAGCACAAAGCGAACATACACAGTTAGACCTCGGCTATATATTGGACTTTGTTTAACTCTCTTAGTAGAAGTAGCAATACTTCGGCTCACAGGGAATGACATTGAACAGCAAACATGGAAGATAAACCTTCTCAGGACTCTCTTTGCAGCCACTGCTTTGGTTCAGCTAATGCATGCAATTTTCACATACAGGGACTATGAAGTATTGAACCATCAACTGCTGCATACATTGATTGAGAAGGTTAATGGTATGCAGAGATACCAGAAGTTCACATGGGATAGAGATAGTGATTTAAACTGGTCCTCTTGGCTTGACAGCAACTTACCAGAAGATGAAGACTGTTCTGATGACCCTGACTACTTGGTTCCCGAACAAGTTGGGGATAATTTGATCACAGCGTCAAGTATCAAAGAATATGATCTCCGCCAACGTCTTCATTTTTGA

Protein Analysis

542

Amino Acids

62.88

Weight (kDa)

5.16

Isoelectric Point (pI)

53.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 330, 1125
AciI CCGC 1 cut(s) 1606
AcoI YGGCCR 1 cut(s) 940
AcsI RAATTY 4 cut(s) 284, 373, 466, 881
AcuI CTGAAG 1 cut(s) 950
AfaI GTAC 1 cut(s) 752
AfeI AGCGCT 1 cut(s) 146
AfiI CCNNNNNNNGG 1 cut(s) 924
AflIII ACRYGT 2 cut(s) 1123, 1173
AluBI AGCT 9 cut(s) 380, 430, 598, 854, 961, 982, 1087, 1136, 1348
AluI AGCT 9 cut(s) 380, 430, 598, 854, 961, 982, 1087, 1136, 1348
Alw21I GWGCWC 1 cut(s) 119
Alw26I GTCTC 3 cut(s) 346, 735, 940
AlwNI CAGNNNCTG 2 cut(s) 433, 1334
Aor51HI AGCGCT 1 cut(s) 146
AoxI GGCC 2 cut(s) 197, 940
ApeKI GCWGC 7 cut(s) 427, 598, 652, 1073, 1111, 1328, 1402
ApoI RAATTY 4 cut(s) 284, 373, 466, 881
Asp700I GAANNNNTTC 1 cut(s) 960
AspLEI GCGC 2 cut(s) 147, 332
AspS9I GGNCC 2 cut(s) 68, 1482
AsuHPI GGTGA 1 cut(s) 992
AsuII TTCGAA 1 cut(s) 481
AvaII GGWCC 2 cut(s) 68, 1482
BalI TGGCCA 1 cut(s) 942
BanII GRGCYC 1 cut(s) 810
BarI GAAGNNNNNNTAC 4 cut(s) 1242, 1245, 1274, 1277
BbsI GAAGAC 3 cut(s) 399, 1524, 1607
Bbv12I GWGCWC 1 cut(s) 119
BbvI GCAGC 7 cut(s) 439, 585, 639, 1060, 1098, 1340, 1389
BccI CCATC 5 cut(s) 321, 754, 833, 1000, 1401
BceAI ACGGC 1 cut(s) 116
BclI TGATCA 4 cut(s) 262, 997, 1128, 1572
BcoDI GTCTC 3 cut(s) 346, 735, 940
BfaI CTAG 3 cut(s) 756, 836, 1079
BfmI CTRYAG 3 cut(s) 434, 504, 549
BfoI RGCGCY 1 cut(s) 148
BisI GCNGC 7 cut(s) 428, 599, 653, 1074, 1112, 1329, 1403
BlsI GCNGC 7 cut(s) 429, 600, 654, 1075, 1113, 1330, 1404
Bme18I GGWCC 2 cut(s) 68, 1482
BmgT120I GGNCC 2 cut(s) 68, 1482
BmiI GGNNCC 1 cut(s) 1548
BmsI GCATC 3 cut(s) 37, 109, 172
BpiI GAAGAC 3 cut(s) 399, 1524, 1607
BplI GAGNNNNNCTC 2 cut(s) 131, 163
Bpu14I TTCGAA 1 cut(s) 481
BpuEI CTTGAG 2 cut(s) 133, 842
Bsa29I ATCGAT 2 cut(s) 528, 687
BsaI GGTCTC 1 cut(s) 735
BsaJI CCNNGG 2 cut(s) 24, 1211
Bsc4I CCNNNNNNNGG 1 cut(s) 924
Bse118I RCCGGY 1 cut(s) 96
Bse1I ACTGG 1 cut(s) 1484
Bse3DI GCAATG 2 cut(s) 237, 654
BseCI ATCGAT 2 cut(s) 528, 687
BseDI CCNNGG 2 cut(s) 24, 1211
BseGI GGATG 1 cut(s) 765
BseLI CCNNNNNNNGG 1 cut(s) 924
BseMI GCAATG 2 cut(s) 237, 654
BseMII CTCAG 6 cut(s) 204, 395, 512, 693, 882, 1327
BseNI ACTGG 1 cut(s) 1484
BseXI GCAGC 7 cut(s) 439, 585, 639, 1060, 1098, 1340, 1389
BsgI GTGCAG 1 cut(s) 1059
Bsh1236I CGCG 2 cut(s) 330, 1125
BshFI GGCC 2 cut(s) 199, 942
BshVI ATCGAT 2 cut(s) 528, 687
BsiHKAI GWGCWC 1 cut(s) 119
BsiSI CCGG 1 cut(s) 97
BslFI GGGAC 2 cut(s) 690, 1388
BslI CCNNNNNNNGG 1 cut(s) 924
BsmAI GTCTC 3 cut(s) 346, 735, 940
BsmFI GGGAC 2 cut(s) 690, 1388
BsmI GAATGC 2 cut(s) 332, 544
BsnI GGCC 2 cut(s) 199, 942
Bso31I GGTCTC 1 cut(s) 735
Bsp119I TTCGAA 1 cut(s) 481
Bsp1286I GDGCHC 2 cut(s) 119, 810
Bsp143I GATC 8 cut(s) 262, 475, 520, 726, 997, 1128, 1572, 1600
BspACI CCGC 1 cut(s) 1606
BspANI GGCC 2 cut(s) 199, 942
BspCNI CTCAG 6 cut(s) 203, 394, 511, 694, 883, 1326
BspDI ATCGAT 2 cut(s) 528, 687
BspFNI CGCG 2 cut(s) 330, 1125
BspHI TCATGA 1 cut(s) 994
BspLI GGNNCC 1 cut(s) 1548
BspMAI CTGCAG 2 cut(s) 438, 508
BspQI GCTCTTC 1 cut(s) 951
BspT104I TTCGAA 1 cut(s) 481
BspTNI GGTCTC 1 cut(s) 735
BsrDI GCAATG 2 cut(s) 237, 654
BsrFI RCCGGY 1 cut(s) 96
BsrI ACTGG 1 cut(s) 1484
BssAI RCCGGY 1 cut(s) 96
BssECI CCNNGG 2 cut(s) 24, 1211
BssMI GATC 8 cut(s) 262, 475, 520, 726, 997, 1128, 1572, 1600
BssT1I CCWWGG 1 cut(s) 24
Bst4CI ACNGT 3 cut(s) 927, 1204, 1523
Bst6I CTCTTC 4 cut(s) 132, 408, 897, 951
BstAPI GCANNNNNTGC 2 cut(s) 433, 1334
BstBI TTCGAA 1 cut(s) 481
BstC8I GCNNGC 6 cut(s) 129, 324, 328, 1059, 1063, 1356
BstDEI CTNAG 8 cut(s) 167, 190, 381, 498, 702, 891, 1243, 1313
BstF5I GGATG 1 cut(s) 765
BstFNI CGCG 2 cut(s) 330, 1125
BstH2I RGCGCY 1 cut(s) 148
BstHHI GCGC 2 cut(s) 147, 332
BstKTI GATC 8 cut(s) 265, 478, 523, 729, 1000, 1131, 1575, 1603
BstMAI GTCTC 3 cut(s) 346, 735, 940
BstMBI GATC 8 cut(s) 262, 475, 520, 726, 997, 1128, 1572, 1600
BstMWI GCNNNNNNNGC 5 cut(s) 386, 433, 503, 979, 1334
BstNSI RCATGY 4 cut(s) 131, 1069, 1177, 1358
BstSFI CTRYAG 3 cut(s) 434, 504, 549
BstUI CGCG 2 cut(s) 330, 1125
BstV1I GCAGC 7 cut(s) 439, 585, 639, 1060, 1098, 1340, 1389
BstV2I GAAGAC 3 cut(s) 399, 1524, 1607
BstXI CCANNNNNNTGG 1 cut(s) 1339
Bsu15I ATCGAT 2 cut(s) 528, 687
BsuRI GGCC 2 cut(s) 199, 942
BsuTUI ATCGAT 2 cut(s) 528, 687
BtsCI GGATG 1 cut(s) 765
BtsI GCAGTG 1 cut(s) 1332
BtsIMutI CAGTG 1 cut(s) 1332
Cac8I GCNNGC 6 cut(s) 129, 324, 328, 1059, 1063, 1356
CaiI CAGNNNCTG 2 cut(s) 433, 1334
CciI TCATGA 1 cut(s) 994
CfoI GCGC 2 cut(s) 147, 332
Cfr10I RCCGGY 1 cut(s) 96
Cfr13I GGNCC 2 cut(s) 68, 1482
ClaI ATCGAT 2 cut(s) 528, 687
CseI GACGC 1 cut(s) 1569
Csp6I GTAC 1 cut(s) 751
CviAII CATG 7 cut(s) 128, 995, 1066, 1174, 1296, 1355, 1455
CviQI GTAC 1 cut(s) 751
DdeI CTNAG 8 cut(s) 167, 190, 381, 498, 702, 891, 1243, 1313
DpnI GATC 8 cut(s) 264, 477, 522, 728, 999, 1130, 1574, 1602
DpnII GATC 8 cut(s) 262, 475, 520, 726, 997, 1128, 1572, 1600
DraI TTTAAA 1 cut(s) 1476
EaeI YGGCCR 1 cut(s) 940
Eam1104I CTCTTC 4 cut(s) 132, 408, 897, 951
EarI CTCTTC 4 cut(s) 132, 408, 897, 951
EciI GGCGGA 1 cut(s) 1595
Eco130I CCWWGG 1 cut(s) 24
Eco147I AGGCCT 1 cut(s) 199
Eco24I GRGCYC 1 cut(s) 810
Eco31I GGTCTC 1 cut(s) 735
Eco47I GGWCC 2 cut(s) 68, 1482
Eco47III AGCGCT 1 cut(s) 146
Eco57I CTGAAG 1 cut(s) 950
EcoO109I RGGNCCY 1 cut(s) 68
EcoRI GAATTC 2 cut(s) 284, 466
EcoT14I CCWWGG 1 cut(s) 24
EcoT22I ATGCAT 1 cut(s) 1356
EcoT38I GRGCYC 1 cut(s) 810
ErhI CCWWGG 1 cut(s) 24
FaeI CATG 7 cut(s) 131, 998, 1069, 1177, 1299, 1358, 1458
FaqI GGGAC 2 cut(s) 690, 1388
FatI CATG 7 cut(s) 127, 994, 1065, 1173, 1295, 1354, 1454
FbaI TGATCA 4 cut(s) 262, 997, 1128, 1572
Fnu4HI GCNGC 7 cut(s) 428, 599, 653, 1074, 1112, 1329, 1403
FokI GGATG 1 cut(s) 772
FriOI GRGCYC 1 cut(s) 810
Fsp4HI GCNGC 7 cut(s) 428, 599, 653, 1074, 1112, 1329, 1403
FspBI CTAG 3 cut(s) 756, 836, 1079
GlaI GCGC 2 cut(s) 146, 331
GluI GCNGC 7 cut(s) 428, 599, 653, 1074, 1112, 1329, 1403
HaeII RGCGCY 1 cut(s) 148
HaeIII GGCC 2 cut(s) 199, 942
HapII CCGG 1 cut(s) 97
HgaI GACGC 1 cut(s) 1569
HhaI GCGC 2 cut(s) 147, 332
Hin1II CATG 7 cut(s) 131, 998, 1069, 1177, 1299, 1358, 1458
Hin6I GCGC 2 cut(s) 145, 330
HinP1I GCGC 2 cut(s) 145, 330
HincII GTYRAC 1 cut(s) 930
HindII GTYRAC 1 cut(s) 930
HindIII AAGCTT 1 cut(s) 1134
HinfI GANTC 9 cut(s) 153, 188, 458, 584, 659, 1040, 1049, 1118, 1318
HpaI GTTAAC 1 cut(s) 930
HpaII CCGG 1 cut(s) 97
HphI GGTGA 1 cut(s) 992
Hpy166II GTNNAC 3 cut(s) 930, 1179, 1452
Hpy188I TCNGA 7 cut(s) 121, 183, 501, 595, 892, 969, 1528
Hpy188III TCNNGA 5 cut(s) 150, 836, 995, 1315, 1550
Hpy8I GTNNAC 3 cut(s) 930, 1179, 1452
HpyAV CCTTC 7 cut(s) 178, 412, 599, 628, 632, 1319, 1414
HpyCH4III ACNGT 3 cut(s) 927, 1204, 1523
HpyCH4IV ACGT 1 cut(s) 1612
HpyF10VI GCNNNNNNNGC 5 cut(s) 386, 433, 503, 979, 1334
HpyF3I CTNAG 8 cut(s) 167, 190, 381, 498, 702, 891, 1243, 1313
HpySE526I ACGT 1 cut(s) 1612
Hsp92II CATG 7 cut(s) 131, 998, 1069, 1177, 1299, 1358, 1458
HspAI GCGC 2 cut(s) 145, 330
Ksp22I TGATCA 4 cut(s) 262, 997, 1128, 1572
KspAI GTTAAC 1 cut(s) 930
Kzo9I GATC 8 cut(s) 262, 475, 520, 726, 997, 1128, 1572, 1600
LguI GCTCTTC 1 cut(s) 951
Lsp1109I GCAGC 7 cut(s) 439, 585, 639, 1060, 1098, 1340, 1389
LweI GCATC 3 cut(s) 37, 109, 172
MaeI CTAG 3 cut(s) 756, 836, 1079
MaeII ACGT 1 cut(s) 1612
MaeIII GTNAC 1 cut(s) 215
MalI GATC 8 cut(s) 264, 477, 522, 728, 999, 1130, 1574, 1602
MboI GATC 8 cut(s) 262, 475, 520, 726, 997, 1128, 1572, 1600
MfeI CAATTG 1 cut(s) 471
MhlI GDGCHC 2 cut(s) 119, 810
MlsI TGGCCA 1 cut(s) 942
MluI ACGCGT 1 cut(s) 1123
MluNI TGGCCA 1 cut(s) 942
MlyI GAGTC 2 cut(s) 182, 1312
MmeI TCCRAC 3 cut(s) 381, 718, 1008
MnlI CCTC 7 cut(s) 115, 210, 697, 886, 1024, 1221, 1495
Mox20I TGGCCA 1 cut(s) 942
Mph1103I ATGCAT 1 cut(s) 1356
MroXI GAANNNNTTC 1 cut(s) 960
MscI TGGCCA 1 cut(s) 942
MseI TTAA 5 cut(s) 369, 929, 1235, 1425, 1475
MslI CAYNNNNRTG 4 cut(s) 15, 168, 528, 1172
Msp20I TGGCCA 1 cut(s) 942
MspI CCGG 1 cut(s) 97
MunI CAATTG 1 cut(s) 471
Mva1269I GAATGC 2 cut(s) 332, 544
MvnI CGCG 2 cut(s) 330, 1125
MwoI GCNNNNNNNGC 5 cut(s) 386, 433, 503, 979, 1334
NdeII GATC 8 cut(s) 262, 475, 520, 726, 997, 1128, 1572, 1600
NlaIII CATG 7 cut(s) 131, 998, 1069, 1177, 1299, 1358, 1458
NlaIV GGNNCC 1 cut(s) 1548
NmeAIII GCCGAG 1 cut(s) 1192
NmuCI GTSAC 1 cut(s) 215
NsiI ATGCAT 1 cut(s) 1356
NspI RCATGY 4 cut(s) 131, 1069, 1177, 1358
NspV TTCGAA 1 cut(s) 481
PaeI GCATGC 2 cut(s) 131, 1358
PagI TCATGA 1 cut(s) 994
PceI AGGCCT 1 cut(s) 199
PciI ACATGT 1 cut(s) 1173
PciSI GCTCTTC 1 cut(s) 951
PctI GAATGC 2 cut(s) 332, 544
PdmI GAANNNNTTC 1 cut(s) 960
PfeI GAWTC 7 cut(s) 153, 458, 584, 659, 1040, 1049, 1118
PkrI GCNGC 7 cut(s) 429, 600, 654, 1075, 1113, 1330, 1404
PleI GAGTC 2 cut(s) 182, 1312
PpsI GAGTC 2 cut(s) 182, 1312
PpuMI RGGWCCY 1 cut(s) 68
PscI ACATGT 1 cut(s) 1173
Psp5II RGGWCCY 1 cut(s) 68
PspN4I GGNNCC 1 cut(s) 1548
PspPI GGNCC 2 cut(s) 68, 1482
PspPPI RGGWCCY 1 cut(s) 68
PstI CTGCAG 2 cut(s) 438, 508
PstNI CAGNNNCTG 2 cut(s) 433, 1334
RsaI GTAC 1 cut(s) 752
RsaNI GTAC 1 cut(s) 751
RseI CAYNNNNRTG 4 cut(s) 15, 168, 528, 1172
SapI GCTCTTC 1 cut(s) 951
SaqAI TTAA 5 cut(s) 369, 929, 1235, 1425, 1475
SatI GCNGC 7 cut(s) 428, 599, 653, 1074, 1112, 1329, 1403
Sau3AI GATC 8 cut(s) 262, 475, 520, 726, 997, 1128, 1572, 1600
Sau96I GGNCC 2 cut(s) 68, 1482
SchI GAGTC 2 cut(s) 182, 1312
SduI GDGCHC 2 cut(s) 119, 810
SfaNI GCATC 3 cut(s) 37, 109, 172
SfcI CTRYAG 3 cut(s) 434, 504, 549
SfuI TTCGAA 1 cut(s) 481
SinI GGWCC 2 cut(s) 68, 1482
SmiMI CAYNNNNRTG 4 cut(s) 15, 168, 528, 1172
SmlI CTYRAG 2 cut(s) 148, 857
SmoI CTYRAG 2 cut(s) 148, 857
SphI GCATGC 2 cut(s) 131, 1358
SseBI AGGCCT 1 cut(s) 199
SsiI CCGC 1 cut(s) 1606
SspI AATATT 1 cut(s) 453
SspMI CTAG 3 cut(s) 756, 836, 1079
StuI AGGCCT 1 cut(s) 199
StyI CCWWGG 1 cut(s) 24
TaaI ACNGT 3 cut(s) 927, 1204, 1523
TaiI ACGT 1 cut(s) 1615
TaqI TCGA 4 cut(s) 443, 481, 528, 687
TatI WGTACW 1 cut(s) 750
TfiI GAWTC 7 cut(s) 153, 458, 584, 659, 1040, 1049, 1118
Tru1I TTAA 5 cut(s) 369, 929, 1235, 1425, 1475
Tru9I TTAA 5 cut(s) 369, 929, 1235, 1425, 1475
TscAI CASTG 1 cut(s) 1339
TseFI GTSAC 1 cut(s) 215
TseI GCWGC 7 cut(s) 427, 598, 652, 1073, 1111, 1328, 1402
Tsp45I GTSAC 1 cut(s) 215
TspDTI ATGAA 9 cut(s) 357, 378, 635, 651, 659, 983, 1395, 1530, 1607
TspRI CASTG 1 cut(s) 1339
VpaK11BI GGWCC 2 cut(s) 68, 1482
XapI RAATTY 4 cut(s) 284, 373, 466, 881
XbaI TCTAGA 1 cut(s) 835
XceI RCATGY 4 cut(s) 131, 1069, 1177, 1358
XmnI GAANNNNTTC 1 cut(s) 960
XspI CTAG 3 cut(s) 756, 836, 1079
Zsp2I ATGCAT 1 cut(s) 1356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.