Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8048568.1

Orthogroup ID

OG0001722

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 362

Gene Structure 362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8048568.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 362 bp

cagtttatgagcaatcaaggaaaatccaagattctcaatctgagctgcaagaaggacaagtagaaatgaagaaaaatttgaaggaaggaatggcaatgttgcaggattcatacagccatttgggacaagaaatcgataacttgaaaaatgaagctgttgaagttgaaaaagagataaccaaagtcggagaccaaatgtcgtctaggatggagaatctgcaggtcaaagcagatgacattaggaatatggcagggctctctttggacaagcaaaagcagcttctagatggacaaacaacagctctcaaggagctcgactttttaaccaaatttcaatccgaggcactagaagagagcaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0007275 GO:0008150 GO:0009553 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0016020 GO:0016021 GO:0022414 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0042802 GO:0044425 GO:0044459 GO:0044464 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

119

Amino Acids

13.61

Weight (kDa)

4.71

Isoelectric Point (pI)

61.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490
fragaria_vesca	FvH4_6g33230 FvH4_6g41730
malus_domestica	MD09G1119800.v1.1 MD09G1266100.v1.1 MD17G1110600.v1.1
prunus_persica	Prupe.3G163900_v2.0.a1 Prupe.3G204300_v2.0.a1 Prupe.3G204300_v2.0.a1
pyrus_communis	pycom07g05510
rosa_chinensis	RchiOBHm_Chr2g0139401 RchiOBHm_Chr2g0142951 RchiOBHm_Chr2g0157531
rosa_laevigata	RLG00000020000 RLG00000020995
rosa_multiflora	Rmu_co8048568.1_g000001 Rmu_sc0000083.1_g000018 Rmu_sc0002277.1_g000037 Rmu_sc0036081.1_g000001 Rmu_sc0036082.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092150 Rroxscaffold_2G00102200 Rroxscaffold_2G00147380
rosa_rugosa	Rorug02G0377400 Rorug02G0461800
rosa_samantha	Rh1CG268300 Rh2AG430400 Rh2AG525900 Rh2BG439400 Rh2BG540600 Rh2CG416100 Rh2CG510600 Rh2DG449400 Rh2DG549100 Rh4BG060600 Rh4CG066400 Rh5DG444200 Rh7DG175700
rosa_wichuraiana	Rw2G035150 Rw2G043560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	210, 347
AcsI	RAATTY	2 cut(s)	75, 328
AgsI	TTSAA	5 cut(s)	81, 144, 160, 166, 334
AhdI	GACNNNNNGTC	1 cut(s)	195
AluBI	AGCT	5 cut(s)	45, 154, 279, 301, 312
AluI	AGCT	5 cut(s)	45, 154, 279, 301, 312
Alw21I	GWGCWC	1 cut(s)	314
Alw26I	GTCTC	1 cut(s)	182
ApeKI	GCWGC	2 cut(s)	45, 276
ApoI	RAATTY	2 cut(s)	75, 328
BanII	GRGCYC	2 cut(s)	257, 314
Bbv12I	GWGCWC	1 cut(s)	314
BbvI	GCAGC	2 cut(s)	32, 288
BccI	CCATC	2 cut(s)	201, 280
BcoDI	GTCTC	1 cut(s)	182
BfaI	CTAG	3 cut(s)	203, 283, 346
BfmI	CTRYAG	1 cut(s)	217
BfuAI	ACCTGC	2 cut(s)	210, 347
BisI	GCNGC	2 cut(s)	46, 277
BlsI	GCNGC	2 cut(s)	47, 278
BmeRI	GACNNNNNGTC	1 cut(s)	195
BpuEI	CTTGAG	1 cut(s)	289
Bsa29I	ATCGAT	1 cut(s)	134
BsaI	GGTCTC	1 cut(s)	182
BsaJI	CCNNGG	1 cut(s)	338
Bse3DI	GCAATG	1 cut(s)	101
BseCI	ATCGAT	1 cut(s)	134
BseDI	CCNNGG	1 cut(s)	338
BseGI	GGATG	1 cut(s)	212
BseMI	GCAATG	1 cut(s)	101
BseMII	CTCAG	1 cut(s)	32
BseXI	GCAGC	2 cut(s)	32, 288
BshVI	ATCGAT	1 cut(s)	134
BsiHKAI	GWGCWC	1 cut(s)	314
BslFI	GGGAC	1 cut(s)	137
BsmAI	GTCTC	1 cut(s)	182
BsmFI	GGGAC	1 cut(s)	137
Bso31I	GGTCTC	1 cut(s)	182
Bsp1286I	GDGCHC	2 cut(s)	257, 314
BspCNI	CTCAG	1 cut(s)	33
BspDI	ATCGAT	1 cut(s)	134
BspMAI	CTGCAG	1 cut(s)	221
BspMI	ACCTGC	2 cut(s)	210, 347
BspTNI	GGTCTC	1 cut(s)	182
BsrDI	GCAATG	1 cut(s)	101
BssECI	CCNNGG	1 cut(s)	338
Bst6I	CTCTTC	1 cut(s)	344
BstDEI	CTNAG	1 cut(s)	41
BstF5I	GGATG	1 cut(s)	212
BstMAI	GTCTC	1 cut(s)	182
BstMWI	GCNNNNNNNGC	1 cut(s)	276
BstSFI	CTRYAG	1 cut(s)	217
BstV1I	GCAGC	2 cut(s)	32, 288
Bsu15I	ATCGAT	1 cut(s)	134
BsuTUI	ATCGAT	1 cut(s)	134
BtsCI	GGATG	1 cut(s)	212
BveI	ACCTGC	2 cut(s)	210, 347
ClaI	ATCGAT	1 cut(s)	134
CviJI	RGCY	7 cut(s)	45, 116, 154, 255, 279, 301, 312
CviKI_1	RGCY	7 cut(s)	45, 116, 154, 255, 279, 301, 312
DdeI	CTNAG	1 cut(s)	41
DriI	GACNNNNNGTC	1 cut(s)	195
Eam1104I	CTCTTC	1 cut(s)	344
Eam1105I	GACNNNNNGTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	344
Ecl136II	GAGCTC	1 cut(s)	312
Eco24I	GRGCYC	2 cut(s)	257, 314
Eco31I	GGTCTC	1 cut(s)	182
Eco53kI	GAGCTC	1 cut(s)	312
EcoICRI	GAGCTC	1 cut(s)	312
EcoT38I	GRGCYC	2 cut(s)	257, 314
FaiI	YATR	3 cut(s)	8, 111, 247
FaqI	GGGAC	1 cut(s)	137
Fnu4HI	GCNGC	2 cut(s)	46, 277
FokI	GGATG	1 cut(s)	219
FriOI	GRGCYC	2 cut(s)	257, 314
Fsp4HI	GCNGC	2 cut(s)	46, 277
FspBI	CTAG	3 cut(s)	203, 283, 346
GluI	GCNGC	2 cut(s)	46, 277
HinfI	GANTC	3 cut(s)	31, 106, 213
Hpy188I	TCNGA	3 cut(s)	42, 187, 339
Hpy188III	TCNNGA	1 cut(s)	283
HpyAV	CCTTC	3 cut(s)	46, 75, 79
HpyCH4V	TGCA	3 cut(s)	48, 102, 219
HpyF10VI	GCNNNNNNNGC	1 cut(s)	276
HpyF3I	CTNAG	1 cut(s)	41
LmnI	GCTCC	1 cut(s)	309
LpnPI	CCDG	4 cut(s)	88, 205, 236, 342
Lsp1109I	GCAGC	2 cut(s)	32, 288
MaeI	CTAG	3 cut(s)	203, 283, 346
MboII	GAAGA	2 cut(s)	81, 361
MhlI	GDGCHC	2 cut(s)	257, 314
MluCI	AATT	2 cut(s)	75, 328
MmeI	TCCRAC	1 cut(s)	165
MnlI	CCTC	1 cut(s)	333
MseI	TTAA	1 cut(s)	322
MwoI	GCNNNNNNNGC	1 cut(s)	276
PfeI	GAWTC	3 cut(s)	31, 106, 213
PkrI	GCNGC	2 cut(s)	47, 278
Psp124BI	GAGCTC	1 cut(s)	314
PstI	CTGCAG	1 cut(s)	221
SacI	GAGCTC	1 cut(s)	314
SaqAI	TTAA	1 cut(s)	322
SatI	GCNGC	2 cut(s)	46, 277
SduI	GDGCHC	2 cut(s)	257, 314
SetI	ASST	7 cut(s)	47, 156, 224, 281, 303, 314, 361
SfcI	CTRYAG	1 cut(s)	217
SmlI	CTYRAG	1 cut(s)	304
SmoI	CTYRAG	1 cut(s)	304
Sse9I	AATT	2 cut(s)	75, 328
SspMI	CTAG	3 cut(s)	203, 283, 346
SstI	GAGCTC	1 cut(s)	314
TaqI	TCGA	2 cut(s)	134, 314
TasI	AATT	2 cut(s)	75, 328
TfiI	GAWTC	3 cut(s)	31, 106, 213
Tru1I	TTAA	1 cut(s)	322
Tru9I	TTAA	1 cut(s)	322
TseI	GCWGC	2 cut(s)	45, 276
TspDTI	ATGAA	3 cut(s)	82, 98, 164
XapI	RAATTY	2 cut(s)	75, 328
XbaI	TCTAGA	1 cut(s)	282
XspI	CTAG	3 cut(s)	203, 283, 346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.