Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001722

Physical Location & Seq

Genomic Coordinates Reverse (-)

73886856 .. 73888827

Gene Structure 1972 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52626

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1536 bp

ATGGGCCGATTCAAATCTCTTCTCTTCATGTTGATCTTCCTAACTCTATCAAGGTCTTGTATGTCTGATTGGTGGTTCTTTTCTTCTTCTTCTTCTAGCAAGACTACTGGCCAGAAACCTCCAGAAACTCTGCAAATATCCGGTGATGTTTCGGTTGAATTCTCCATGAAAGCTTTCCACAATGAAAAGGCAATTGAACGAATAGAAGAGGCTGATAAAAGAAAACTGAAATCTTGTTGGGATGATGCTTATAAAGCACTAGTTACATCATGCTCCGAAATTTCCAGTGACAAGAATGATATGAAGAAGAGGTTTTCTTGGGAACTAAGCAACTGCTTTCAGAAAGACATCGGAAGGCCTCCTTTTCCTACGTGCCGTGAAGGCTCTCCCATGAAAGATTGCCTTACAAAATTGGACGACAGTGCTATTCAGACTTACCGGGCATTCTTCCTCGAGACCGAGTCTATTTGCTATCAGTTACAGTCTCATGTATTCAGGGCTGAGACAGAAAAGTTGGTGAATGAATTGGTGAAGTCAGCTGATTATGCAGAGGGCAAATTAGACACCATAGCAGAACAATCAGAGAAATTGTTGGAGGGTTCAAAAAATATACACATATCTTTGACTTCAATTGACAAGCAGACACAAGAAATGGCTCAAACTTCCAAGAAAGTTGGTGATCAAATTGGTAATATAGTGAAGCAGTCAGAGGTAATGTTTGAGCAATCTGAGAAGATTGCTGCATCTCAGTTAGAATTGCAAAAAGGGCAAGACAAAATGAAGGAAAATTTGCAAGAGGGCATGGAAGTGATTCATGAGTCTTATCATGCTCTAGGTAAAGAAATACACAGTTTACAGAATGAGACTATTGAAATAGAGAAGAAGGTAACCGAAGTTGGCGACACCGTGTCTACAAAGATGAATAGCCTCCAAAGTAAGGCTGATGATATTAGCAATGTAACAGAGATTTCCTTGGAAAAGCAAAAAGAACTTCTGGAAGGTCAATCCGAAGCTCTTGACGGGCTTCAGTCATTAACTAAATTCCAGGTTCAAGCTCTAGAAGAGAGCAGGGGTATTTTGCAGCAATTGGCTAAATTTGGTCGTGAACAGCAAGAAGAGCTGCTTCGGCAACAAGAACAGATTAAACAAGGCCATGACAATCTGGTTAAAAATTCGAAGTCCATACTGGCAGCTCAGGAAGCTTTTGAACAAAAGCAAGAAACCATGTTTATTGCTTTGGAAAAGCTATTCAAATTGCACAATGCCTTGTTGCTCGAATCGAGATCAATCAAAGCTTTCTTTCTTTATTCCATATCGATGTTTGTCATCTACTTGTCGACCAGCACAAAGCAAACTTACAAAGTGAGACCCATACTTTACATAGGTCTATGCGTTGCATTTTTGATTGAATTAGCAACGCTTAGGTTTTCAAGAAATGGAGTAGAGCAACAGACTTTGATAGTCAATGGTATTAGGCTCCTTTATGTGTTGTTTTCTTTAGTTCTGGTAGTATACGCCGCCTTCACATATAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

511

Amino Acids

58.28

Weight (kDa)

5.83

Isoelectric Point (pI)

58.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490
fragaria_vesca	FvH4_6g33230 FvH4_6g41730
malus_domestica	MD09G1119800.v1.1 MD09G1266100.v1.1 MD17G1110600.v1.1
prunus_persica	Prupe.3G163900_v2.0.a1 Prupe.3G204300_v2.0.a1 Prupe.3G204300_v2.0.a1
pyrus_communis	pycom07g05510
rosa_chinensis	RchiOBHm_Chr2g0139401 RchiOBHm_Chr2g0142951 RchiOBHm_Chr2g0157531
rosa_laevigata	RLG00000020000 RLG00000020995
rosa_multiflora	Rmu_co8048568.1_g000001 Rmu_sc0000083.1_g000018 Rmu_sc0002277.1_g000037 Rmu_sc0036081.1_g000001 Rmu_sc0036082.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092150 Rroxscaffold_2G00102200 Rroxscaffold_2G00147380
rosa_rugosa	Rorug02G0377400 Rorug02G0461800
rosa_samantha	Rh1CG268300 Rh2AG430400 Rh2AG525900 Rh2BG439400 Rh2BG540600 Rh2CG416100 Rh2CG510600 Rh2DG449400 Rh2DG549100 Rh4BG060600 Rh4CG066400 Rh5DG444200 Rh7DG175700
rosa_wichuraiana	Rw2G035150 Rw2G043560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	252
AccI	GTMKAC	3 cut(s)	911, 1337, 1512
AciI	CCGC	1 cut(s)	1518
AcoI	YGGCCR	1 cut(s)	109
AcsI	RAATTY	6 cut(s)	158, 279, 787, 1040, 1094, 1171
AcuI	CTGAAG	1 cut(s)	1010
AfiI	CCNNNNNNNGG	1 cut(s)	937
AhdI	GACNNNNNGTC	1 cut(s)	907
AhlI	ACTAGT	1 cut(s)	259
AjnI	CCWGG	1 cut(s)	1044
AluBI	AGCT	9 cut(s)	173, 539, 1013, 1055, 1120, 1193, 1202, 1246, 1295
AluI	AGCT	9 cut(s)	173, 539, 1013, 1055, 1120, 1193, 1202, 1246, 1295
Alw26I	GTCTC	5 cut(s)	449, 489, 497, 857, 1360
Ama87I	CYCGRG	1 cut(s)	452
AoxI	GGCC	4 cut(s)	4, 109, 356, 1150
ApeKI	GCWGC	4 cut(s)	740, 1081, 1120, 1190
ApoI	RAATTY	6 cut(s)	158, 279, 787, 1040, 1094, 1171
Asp700I	GAANNNNTTC	2 cut(s)	173, 810
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	440
AsuHPI	GGTGA	4 cut(s)	155, 529, 541, 689
AsuII	TTCGAA	1 cut(s)	1175
AvaI	CYCGRG	1 cut(s)	452
BalI	TGGCCA	1 cut(s)	111
BbvI	GCAGC	4 cut(s)	727, 1093, 1107, 1202
BceAI	ACGGC	1 cut(s)	360
BciT130I	CCWGG	1 cut(s)	1046
BclI	TGATCA	1 cut(s)	679
BcnI	CCSGG	1 cut(s)	440
BcoDI	GTCTC	5 cut(s)	449, 489, 497, 857, 1360
BcuI	ACTAGT	1 cut(s)	259
BfaI	CTAG	4 cut(s)	96, 260, 833, 1058
BglI	GCCNNNNNGGC	1 cut(s)	381
BisI	GCNGC	5 cut(s)	741, 1082, 1121, 1191, 1518
BlsI	GCNGC	5 cut(s)	742, 1083, 1122, 1192, 1519
Bme1390I	CCNGG	2 cut(s)	440, 1046
BmeRI	GACNNNNNGTC	1 cut(s)	907
BmeT110I	CYCGRG	1 cut(s)	452
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	1478
BmrFI	CCNGG	2 cut(s)	440, 1046
BmsI	GCATC	2 cut(s)	235, 752
BpmI	CTGGAG	1 cut(s)	105
Bpu10I	CCTNAGC	2 cut(s)	1194, 1421
Bpu14I	TTCGAA	1 cut(s)	1175
BpuMI	CCSGG	1 cut(s)	440
Bsa29I	ATCGAT	1 cut(s)	1316
BsaAI	YACGTR	1 cut(s)	372
BsaBI	GATNNNNATC	1 cut(s)	13
BsaI	GGTCTC	2 cut(s)	449, 1360
BsaJI	CCNNGG	1 cut(s)	972
BsaWI	WCCGGW	1 cut(s)	140
Bsc4I	CCNNNNNNNGG	1 cut(s)	937
Bse1I	ACTGG	3 cut(s)	112, 285, 1191
Bse3DI	GCAATG	1 cut(s)	961
Bse8I	GATNNNNATC	1 cut(s)	13
BseBI	CCWGG	1 cut(s)	1046
BseCI	ATCGAT	1 cut(s)	1316
BseDI	CCNNGG	1 cut(s)	972
BseGI	GGATG	1 cut(s)	247
BseJI	GATNNNNATC	1 cut(s)	13
BseLI	CCNNNNNNNGG	1 cut(s)	937
BseMI	GCAATG	1 cut(s)	961
BseMII	CTCAG	4 cut(s)	492, 720, 761, 1208
BseNI	ACTGG	3 cut(s)	112, 285, 1191
BseXI	GCAGC	4 cut(s)	727, 1093, 1107, 1202
BshFI	GGCC	4 cut(s)	6, 111, 358, 1152
BshVI	ATCGAT	1 cut(s)	1316
BsiHKCI	CYCGRG	1 cut(s)	452
BsiSI	CCGG	2 cut(s)	141, 439
BslI	CCNNNNNNNGG	1 cut(s)	937
BsmAI	GTCTC	5 cut(s)	449, 489, 497, 857, 1360
BsmI	GAATGC	1 cut(s)	443
BsnI	GGCC	4 cut(s)	6, 111, 358, 1152
Bso31I	GGTCTC	2 cut(s)	449, 1360
BsoBI	CYCGRG	1 cut(s)	452
Bsp119I	TTCGAA	1 cut(s)	1175
Bsp143I	GATC	3 cut(s)	33, 679, 1283
BspACI	CCGC	1 cut(s)	1518
BspANI	GGCC	4 cut(s)	6, 111, 358, 1152
BspCNI	CTCAG	4 cut(s)	493, 721, 760, 1207
BspDI	ATCGAT	1 cut(s)	1316
BspHI	TCATGA	1 cut(s)	814
BspLI	GGNNCC	1 cut(s)	1478
BspQI	GCTCTTC	1 cut(s)	1110
BspT104I	TTCGAA	1 cut(s)	1175
BspTNI	GGTCTC	2 cut(s)	449, 1360
BsrDI	GCAATG	1 cut(s)	961
BsrI	ACTGG	3 cut(s)	112, 285, 1191
BssECI	CCNNGG	1 cut(s)	972
BssMI	GATC	3 cut(s)	33, 679, 1283
BssNAI	GTATAC	1 cut(s)	1513
BssT1I	CCWWGG	1 cut(s)	972
Bst1107I	GTATAC	1 cut(s)	1513
Bst2UI	CCWGG	1 cut(s)	1046
Bst4CI	ACNGT	4 cut(s)	422, 483, 851, 907
Bst6I	CTCTTC	6 cut(s)	24, 29, 201, 302, 1056, 1110
BstBAI	YACGTR	1 cut(s)	372
BstBI	TTCGAA	1 cut(s)	1175
BstDEI	CTNAG	6 cut(s)	326, 501, 729, 747, 1194, 1421
BstEII	GGTNACC	1 cut(s)	886
BstF5I	GGATG	1 cut(s)	247
BstKTI	GATC	3 cut(s)	36, 682, 1286
BstMAI	GTCTC	5 cut(s)	449, 489, 497, 857, 1360
BstMBI	GATC	3 cut(s)	33, 679, 1283
BstMWI	GCNNNNNNNGC	7 cut(s)	254, 381, 545, 766, 1117, 1126, 1199
BstNI	CCWGG	1 cut(s)	1046
BstPI	GGTNACC	1 cut(s)	886
BstSCI	CCNGG	2 cut(s)	438, 1044
BstV1I	GCAGC	4 cut(s)	727, 1093, 1107, 1202
BstZ17I	GTATAC	1 cut(s)	1513
Bsu15I	ATCGAT	1 cut(s)	1316
BsuRI	GGCC	4 cut(s)	6, 111, 358, 1152
BsuTUI	ATCGAT	1 cut(s)	1316
BtsCI	GGATG	1 cut(s)	247
BtsIMutI	CAGTG	2 cut(s)	292, 427
CciI	TCATGA	1 cut(s)	814
Cfr13I	GGNCC	1 cut(s)	4
ClaI	ATCGAT	1 cut(s)	1316
DdeI	CTNAG	6 cut(s)	326, 501, 729, 747, 1194, 1421
DpnI	GATC	3 cut(s)	35, 681, 1285
DpnII	GATC	3 cut(s)	33, 679, 1283
DriI	GACNNNNNGTC	1 cut(s)	907
EaeI	YGGCCR	1 cut(s)	109
Eam1104I	CTCTTC	6 cut(s)	24, 29, 201, 302, 1056, 1110
Eam1105I	GACNNNNNGTC	1 cut(s)	907
EarI	CTCTTC	6 cut(s)	24, 29, 201, 302, 1056, 1110
Eco130I	CCWWGG	1 cut(s)	972
Eco147I	AGGCCT	1 cut(s)	358
Eco31I	GGTCTC	2 cut(s)	449, 1360
Eco57I	CTGAAG	1 cut(s)	1010
Eco88I	CYCGRG	1 cut(s)	452
Eco91I	GGTNACC	1 cut(s)	886
EcoO65I	GGTNACC	1 cut(s)	886
EcoRI	GAATTC	1 cut(s)	158
EcoRII	CCWGG	1 cut(s)	1044
EcoT14I	CCWWGG	1 cut(s)	972
ErhI	CCWWGG	1 cut(s)	972
FalI	AAGNNNNNCTT	6 cut(s)	346, 378, 387, 419, 1107, 1139
FbaI	TGATCA	1 cut(s)	679
FblI	GTMKAC	3 cut(s)	911, 1337, 1512
Fnu4HI	GCNGC	5 cut(s)	741, 1082, 1121, 1191, 1518
FokI	GGATG	1 cut(s)	254
Fsp4HI	GCNGC	5 cut(s)	741, 1082, 1121, 1191, 1518
FspBI	CTAG	4 cut(s)	96, 260, 833, 1058
GluI	GCNGC	5 cut(s)	741, 1082, 1121, 1191, 1518
GsuI	CTGGAG	1 cut(s)	105
HaeIII	GGCC	4 cut(s)	6, 111, 358, 1152
HapII	CCGG	2 cut(s)	141, 439
HincII	GTYRAC	1 cut(s)	1338
HindII	GTYRAC	1 cut(s)	1338
HindIII	AAGCTT	3 cut(s)	171, 1200, 1293
HinfI	GANTC	5 cut(s)	9, 461, 811, 818, 1277
HpaII	CCGG	2 cut(s)	141, 439
HphI	GGTGA	4 cut(s)	155, 529, 541, 689
Hpy166II	GTNNAC	5 cut(s)	854, 912, 1106, 1338, 1513
Hpy188I	TCNGA	9 cut(s)	67, 277, 342, 353, 432, 583, 709, 730, 1009
Hpy8I	GTNNAC	5 cut(s)	854, 912, 1106, 1338, 1513
HpyAV	CCTTC	6 cut(s)	348, 374, 775, 877, 992, 1531
HpyCH4III	ACNGT	4 cut(s)	422, 483, 851, 907
HpyCH4IV	ACGT	1 cut(s)	371
HpyCH4V	TGCA	8 cut(s)	133, 548, 743, 760, 793, 1081, 1258, 1397
HpyF10VI	GCNNNNNNNGC	7 cut(s)	254, 381, 545, 766, 1117, 1126, 1199
HpyF3I	CTNAG	6 cut(s)	326, 501, 729, 747, 1194, 1421
HpySE526I	ACGT	1 cut(s)	371
Ksp22I	TGATCA	1 cut(s)	679
Kzo9I	GATC	3 cut(s)	33, 679, 1283
LguI	GCTCTTC	1 cut(s)	1110
LmnI	GCTCC	2 cut(s)	278, 1482
Lsp1109I	GCAGC	4 cut(s)	727, 1093, 1107, 1202
LweI	GCATC	2 cut(s)	235, 752
MaeI	CTAG	4 cut(s)	96, 260, 833, 1058
MaeII	ACGT	1 cut(s)	371
MaeIII	GTNAC	5 cut(s)	262, 287, 477, 886, 958
MalI	GATC	3 cut(s)	35, 681, 1285
MboI	GATC	3 cut(s)	33, 679, 1283
MfeI	CAATTG	3 cut(s)	192, 630, 1085
MlsI	TGGCCA	1 cut(s)	111
MluNI	TGGCCA	1 cut(s)	111
MlyI	GAGTC	2 cut(s)	470, 827
MmeI	TCCRAC	1 cut(s)	573
Mox20I	TGGCCA	1 cut(s)	111
MroXI	GAANNNNTTC	2 cut(s)	173, 810
MscI	TGGCCA	1 cut(s)	111
MseI	TTAA	3 cut(s)	1034, 1143, 1167
MslI	CAYNNNNRTG	2 cut(s)	806, 1316
Msp20I	TGGCCA	1 cut(s)	111
MspA1I	CMGCKG	1 cut(s)	539
MspI	CCGG	2 cut(s)	141, 439
MspR9I	CCNGG	2 cut(s)	440, 1046
MunI	CAATTG	3 cut(s)	192, 630, 1085
Mva1269I	GAATGC	1 cut(s)	443
MvaI	CCWGG	1 cut(s)	1046
MwoI	GCNNNNNNNGC	7 cut(s)	254, 381, 545, 766, 1117, 1126, 1199
NciI	CCSGG	1 cut(s)	440
NdeII	GATC	3 cut(s)	33, 679, 1283
NlaIV	GGNNCC	1 cut(s)	1478
NmuCI	GTSAC	1 cut(s)	287
NspV	TTCGAA	1 cut(s)	1175
PaeR7I	CTCGAG	1 cut(s)	452
PagI	TCATGA	1 cut(s)	814
PceI	AGGCCT	1 cut(s)	358
PciSI	GCTCTTC	1 cut(s)	1110
PctI	GAATGC	1 cut(s)	443
PdmI	GAANNNNTTC	2 cut(s)	173, 810
PfeI	GAWTC	3 cut(s)	9, 811, 1277
PflFI	GACNNNGTC	1 cut(s)	460
PkrI	GCNGC	5 cut(s)	742, 1083, 1122, 1192, 1519
PleI	GAGTC	2 cut(s)	469, 826
PpsI	GAGTC	2 cut(s)	469, 826
Ppu21I	YACGTR	1 cut(s)	372
PsiI	TTATAA	1 cut(s)	252
Psp6I	CCWGG	1 cut(s)	1044
PspEI	GGTNACC	1 cut(s)	886
PspGI	CCWGG	1 cut(s)	1044
PspN4I	GGNNCC	1 cut(s)	1478
PspPI	GGNCC	1 cut(s)	4
PsyI	GACNNNGTC	1 cut(s)	460
PvuII	CAGCTG	1 cut(s)	539
RseI	CAYNNNNRTG	2 cut(s)	806, 1316
SalI	GTCGAC	1 cut(s)	1336
SapI	GCTCTTC	1 cut(s)	1110
SaqAI	TTAA	3 cut(s)	1034, 1143, 1167
SatI	GCNGC	5 cut(s)	741, 1082, 1121, 1191, 1518
Sau3AI	GATC	3 cut(s)	33, 679, 1283
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	2 cut(s)	470, 827
ScrFI	CCNGG	2 cut(s)	440, 1046
SfaNI	GCATC	2 cut(s)	235, 752
Sfr274I	CTCGAG	1 cut(s)	452
SfuI	TTCGAA	1 cut(s)	1175
SlaI	CTCGAG	1 cut(s)	452
SmiMI	CAYNNNNRTG	2 cut(s)	806, 1316
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
SpeI	ACTAGT	1 cut(s)	259
SseBI	AGGCCT	1 cut(s)	358
SsiI	CCGC	1 cut(s)	1518
SspMI	CTAG	4 cut(s)	96, 260, 833, 1058
StuI	AGGCCT	1 cut(s)	358
StyD4I	CCNGG	2 cut(s)	438, 1044
StyI	CCWWGG	1 cut(s)	972
TaaI	ACNGT	4 cut(s)	422, 483, 851, 907
TaiI	ACGT	1 cut(s)	374
TaqI	TCGA	6 cut(s)	453, 1175, 1275, 1280, 1316, 1337
TaqII	GACCGA	1 cut(s)	473
TauI	GCSGC	1 cut(s)	1520
TfiI	GAWTC	3 cut(s)	9, 811, 1277
Tru1I	TTAA	3 cut(s)	1034, 1143, 1167
Tru9I	TTAA	3 cut(s)	1034, 1143, 1167
TscAI	CASTG	2 cut(s)	292, 427
TseFI	GTSAC	1 cut(s)	287
TseI	GCWGC	4 cut(s)	740, 1081, 1120, 1190
Tsp45I	GTSAC	1 cut(s)	287
TspDTI	ATGAA	9 cut(s)	16, 182, 198, 317, 407, 537, 794, 803, 935
TspRI	CASTG	2 cut(s)	292, 427
Tth111I	GACNNNGTC	1 cut(s)	460
XapI	RAATTY	6 cut(s)	158, 279, 787, 1040, 1094, 1171
XbaI	TCTAGA	1 cut(s)	1057
XhoI	CTCGAG	1 cut(s)	452
XmiI	GTMKAC	3 cut(s)	911, 1337, 1512
XmnI	GAANNNNTTC	2 cut(s)	173, 810
XspI	CTAG	4 cut(s)	96, 260, 833, 1058

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.