Rw2G035150

Protein GAMETE EXPRESSED

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
57893681 .. 57895903
2223 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G035150.1

Sequence Viewer

Length: 1776 bp
ATGGGTCGTCAGTGTTGTTATCTTCTAATTCTGCTAATTCTAGCATTGGCTTCAGCAAAGTCTCACTCATGGAGTTGGTTCCCTTCTTCAGAAGAGAATCAATCTACTGATGAGAACCCTTCTATTAGTGGAACTTCAGTTGGCAGGTTTTCCATGGAAGGTCATAATGATGACCCCAAGGCAATCAGACTTGTTGAAGATGCAGAGAAGAAGTTGGCAGGTCCAAACTCTTGTTGGCAAAATGCTTATCGGCATCTCTTTTCGGGGTGCTCGGAGGTCCATGCCGTTGAAGAGAAGCGCTCAAGATTTGCTTGGCATCTGAGTGATTGCTTTCAGAAGGACTCTGCAAGGCCTCCTTTTCCTTCATGTGACCCGAAATCTGCAATGTATAAATGCTTGAAAACTTTGAACGATGATCAGCACAAGGTCTATTTGGAATTCTACCTCGAAACTAACTCAATATGCCATCAGTTGCAGGCTCGCGCATTTAAGTTTGAAACAGAGAGAATTGTGAATGAACTTAAAAATTCAGCTCAGTATGCAGAAGGCAAGTTGGAAATAATTGAAGAGAAGGCAGAGCATCTACTGCAGGGGTCAAATCAAATATTTGAGTCTTTGAATTCGATTGATCTTCGAACACAGCAAGTTGCTCAGACTGCACAGAATGTGGAAGATCATATAGATGTGGTGTTGAAGCATTCCGCAGCAGTTTATGAGCAATCAAGGAAAATCCAAGATTCTCAATCTGAGCTGCAAGAAGGACAAGTAGAAATGAAGAAAAATTTGAAGGAAGGAATGGCAATGTTGCAGGATTCATACAGCCATTTGGGACAAGAAATCGCTAACTTGAAAAATGAAGCTGTTGAAGTTGAAAAAGAGATAACCAAAGTAGGAGACCAAATGTCGTCTAGGATGGAGAATCTGCAGGTCAAAGCAGATGACATTAGGAATATGGCAGGGCTCTCTTTGGACAAGCAAAAGCAGCTTCTAGATGGACAAACAACAGCTCTCAAGGAGCTCGACTTTTTAACCAAATTTCAATCCGAGGCACTAGAAGAGAGCAGGAAAACCCTACAACGGTTAACTGAATATGGTCACAGACAACAAGAAGAGCTTCTTCAGAAGCAACTACAGCTTCAAAAAGTTCATGATCACCTGATGGAAAACTCAAAGTCAATGTTGGAGGCACAGGAATCTTTTGAATCAAAGCAAGCCAGCATGTTCGCTGCATTAGACAAGCTATTGGCTTTGCACAATGCTATGCTGCTTGAATCACGGTTGATCAAAGCTTTCTTTATTTACTCTATATCAATCTTTGCTATCTACATGTTCACAAGCACAAAGCGAACATACACAGTTAGACCTCGGCTATATATCGGGCTGTGTTTGACTCTTTTAGTAGAAGTAGCAATACTTCGGCTCACAGGGCATGATATTGAACAGCAAACATGGAAGATAAACCTTCTCAGGTCTCTTTTTGCAGCGACTGCTTTAGTTCAGCTAATGCATGCAATTTTCACATACAGGGACTATGAAGTATTGAACCATCAACTATTGCATACATTGATTGAAAAGGTTAATGGCATTCAGAGGTACCAGAAGTTCTCTTGGGATGAAGATAGTGATTTGAACTGGTCCTCTTGGCTGGACAGCAACTTACCAGAAGATGAAGACTGTTCTGAAGACCCTGACTACGTAGTTCCCGAACAAGTTGGGGACAATTTAATCACAGCTTCAAGTATCAAACAATATGATCTCCGTCAACGTCTTCATTGA

Protein Analysis

591

Amino Acids

68.04

Weight (kDa)

5.43

Isoelectric Point (pI)

52.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 135, 209, 916
Acc65I GGTACC 1 cut(s) 1593
AccB1I GGYRCC 1 cut(s) 1593
AccII CGCG 1 cut(s) 483
AciI CCGC 1 cut(s) 702
AcsI RAATTY 5 cut(s) 437, 526, 619, 781, 1034
AcuI CTGAAG 5 cut(s) 36, 72, 120, 1103, 1701
AfaI GTAC 1 cut(s) 1595
AfeI AGCGCT 1 cut(s) 299
AfiI CCNNNNNNNGG 1 cut(s) 1077
AflIII ACRYGT 1 cut(s) 1326
AhdI GACNNNNNGTC 1 cut(s) 901
Alw21I GWGCWC 2 cut(s) 272, 1020
Alw26I GTCTC 3 cut(s) 66, 888, 1476
AlwNI CAGNNNCTG 1 cut(s) 1487
Aor51HI AGCGCT 1 cut(s) 299
AoxI GGCC 1 cut(s) 350
ApeKI GCWGC 6 cut(s) 704, 751, 982, 1226, 1264, 1481
ApoI RAATTY 5 cut(s) 437, 526, 619, 781, 1034
Asp700I GAANNNNTTC 1 cut(s) 1113
Asp718I GGTACC 1 cut(s) 1593
AspLEI GCGC 2 cut(s) 300, 485
AspS9I GGNCC 3 cut(s) 221, 277, 1635
AsuHPI GGTGA 1 cut(s) 1145
AsuII TTCGAA 1 cut(s) 634
AvaII GGWCC 3 cut(s) 221, 277, 1635
BanI GGYRCC 1 cut(s) 1593
BanII GRGCYC 2 cut(s) 963, 1020
BarI GAAGNNNNNNTAC 4 cut(s) 1395, 1398, 1427, 1430
BbsI GAAGAC 3 cut(s) 1677, 1689, 1760
Bbv12I GWGCWC 2 cut(s) 272, 1020
BbvI GCAGC 6 cut(s) 716, 738, 994, 1213, 1251, 1493
BccI CCATC 5 cut(s) 474, 907, 986, 1153, 1554
BceAI ACGGC 1 cut(s) 269
BclI TGATCA 3 cut(s) 415, 1150, 1281
BcoDI GTCTC 3 cut(s) 66, 888, 1476
BfaI CTAG 4 cut(s) 41, 909, 989, 1052
BfmI CTRYAG 3 cut(s) 587, 923, 1130
BfoI RGCGCY 1 cut(s) 301
BfuAI ACCTGC 3 cut(s) 135, 209, 916
BisI GCNGC 6 cut(s) 705, 752, 983, 1227, 1265, 1482
BlsI GCNGC 6 cut(s) 706, 753, 984, 1228, 1266, 1483
Bme18I GGWCC 3 cut(s) 221, 277, 1635
BmeRI GACNNNNNGTC 1 cut(s) 901
BmgT120I GGNCC 3 cut(s) 221, 277, 1635
BmiI GGNNCC 2 cut(s) 80, 1595
BmsI GCATC 4 cut(s) 190, 262, 325, 589
BpiI GAAGAC 3 cut(s) 1677, 1689, 1760
BplI GAGNNNNNCTC 2 cut(s) 284, 316
Bpu14I TTCGAA 1 cut(s) 634
BpuEI CTTGAG 2 cut(s) 286, 995
BsaAI YACGTR 1 cut(s) 1696
BsaI GGTCTC 2 cut(s) 888, 1476
BsaJI CCNNGG 4 cut(s) 153, 177, 1044, 1364
Bsc4I CCNNNNNNNGG 1 cut(s) 1077
Bse1I ACTGG 1 cut(s) 1637
Bse3DI GCAATG 2 cut(s) 390, 807
BseDI CCNNGG 4 cut(s) 153, 177, 1044, 1364
BseGI GGATG 2 cut(s) 918, 1618
BseLI CCNNNNNNNGG 1 cut(s) 1077
BseMI GCAATG 2 cut(s) 390, 807
BseMII CTCAG 5 cut(s) 311, 548, 665, 738, 1480
BseNI ACTGG 1 cut(s) 1637
BseXI GCAGC 6 cut(s) 716, 738, 994, 1213, 1251, 1493
BsgI GTGCAG 1 cut(s) 642
Bsh1236I CGCG 1 cut(s) 483
BshFI GGCC 1 cut(s) 352
BshNI GGYRCC 1 cut(s) 1593
BsiHKAI GWGCWC 2 cut(s) 272, 1020
BslFI GGGAC 3 cut(s) 843, 1541, 1730
BslI CCNNNNNNNGG 1 cut(s) 1077
BsmAI GTCTC 3 cut(s) 66, 888, 1476
BsmFI GGGAC 3 cut(s) 843, 1541, 1730
BsmI GAATGC 2 cut(s) 697, 1584
BsnI GGCC 1 cut(s) 352
Bso31I GGTCTC 2 cut(s) 888, 1476
Bsp119I TTCGAA 1 cut(s) 634
Bsp1286I GDGCHC 3 cut(s) 272, 963, 1020
Bsp143I GATC 6 cut(s) 415, 628, 673, 1150, 1281, 1753
Bsp19I CCATGG 1 cut(s) 153
BspACI CCGC 1 cut(s) 702
BspANI GGCC 1 cut(s) 352
BspCNI CTCAG 5 cut(s) 312, 547, 664, 739, 1479
BspFNI CGCG 1 cut(s) 483
BspHI TCATGA 1 cut(s) 1147
BspLI GGNNCC 2 cut(s) 80, 1595
BspMAI CTGCAG 2 cut(s) 591, 927
BspMI ACCTGC 3 cut(s) 135, 209, 916
BspQI GCTCTTC 1 cut(s) 1104
BspT104I TTCGAA 1 cut(s) 634
BspT107I GGYRCC 1 cut(s) 1593
BspTNI GGTCTC 2 cut(s) 888, 1476
BsrDI GCAATG 2 cut(s) 390, 807
BsrI ACTGG 1 cut(s) 1637
BssECI CCNNGG 4 cut(s) 153, 177, 1044, 1364
BssMI GATC 6 cut(s) 415, 628, 673, 1150, 1281, 1753
BssT1I CCWWGG 2 cut(s) 153, 177
Bst4CI ACNGT 4 cut(s) 1080, 1278, 1357, 1676
Bst6I CTCTTC 5 cut(s) 87, 285, 561, 1050, 1104
BstAPI GCANNNNNTGC 2 cut(s) 586, 1487
BstBAI YACGTR 1 cut(s) 1696
BstBI TTCGAA 1 cut(s) 634
BstC8I GCNNGC 5 cut(s) 477, 481, 1212, 1216, 1509
BstDEI CTNAG 5 cut(s) 320, 534, 651, 747, 1466
BstDSI CCRYGG 1 cut(s) 153
BstF5I GGATG 2 cut(s) 918, 1618
BstFNI CGCG 1 cut(s) 483
BstH2I RGCGCY 1 cut(s) 301
BstHHI GCGC 2 cut(s) 300, 485
BstKTI GATC 6 cut(s) 418, 631, 676, 1153, 1284, 1756
BstMAI GTCTC 3 cut(s) 66, 888, 1476
BstMBI GATC 6 cut(s) 415, 628, 673, 1150, 1281, 1753
BstMWI GCNNNNNNNGC 7 cut(s) 539, 586, 656, 982, 1132, 1426, 1487
BstNSI RCATGY 3 cut(s) 1222, 1330, 1511
BstSFI CTRYAG 3 cut(s) 587, 923, 1130
BstSNI TACGTA 1 cut(s) 1696
BstUI CGCG 1 cut(s) 483
BstV1I GCAGC 6 cut(s) 716, 738, 994, 1213, 1251, 1493
BstV2I GAAGAC 3 cut(s) 1677, 1689, 1760
BsuRI GGCC 1 cut(s) 352
BtgI CCRYGG 1 cut(s) 153
BtsCI GGATG 2 cut(s) 918, 1618
BtsIMutI CAGTG 1 cut(s) 17
BveI ACCTGC 3 cut(s) 135, 209, 916
Cac8I GCNNGC 5 cut(s) 477, 481, 1212, 1216, 1509
CaiI CAGNNNCTG 1 cut(s) 1487
CciI TCATGA 1 cut(s) 1147
CfoI GCGC 2 cut(s) 300, 485
Cfr13I GGNCC 3 cut(s) 221, 277, 1635
Csp6I GTAC 1 cut(s) 1594
CviQI GTAC 1 cut(s) 1594
DdeI CTNAG 5 cut(s) 320, 534, 651, 747, 1466
DpnI GATC 6 cut(s) 417, 630, 675, 1152, 1283, 1755
DpnII GATC 6 cut(s) 415, 628, 673, 1150, 1281, 1753
DriI GACNNNNNGTC 1 cut(s) 901
Eam1104I CTCTTC 5 cut(s) 87, 285, 561, 1050, 1104
Eam1105I GACNNNNNGTC 1 cut(s) 901
EarI CTCTTC 5 cut(s) 87, 285, 561, 1050, 1104
Ecl136II GAGCTC 1 cut(s) 1018
Eco105I TACGTA 1 cut(s) 1696
Eco130I CCWWGG 2 cut(s) 153, 177
Eco147I AGGCCT 1 cut(s) 352
Eco24I GRGCYC 2 cut(s) 963, 1020
Eco31I GGTCTC 2 cut(s) 888, 1476
Eco47I GGWCC 3 cut(s) 221, 277, 1635
Eco47III AGCGCT 1 cut(s) 299
Eco53kI GAGCTC 1 cut(s) 1018
Eco57I CTGAAG 5 cut(s) 36, 72, 120, 1103, 1701
EcoICRI GAGCTC 1 cut(s) 1018
EcoRI GAATTC 2 cut(s) 437, 619
EcoT14I CCWWGG 2 cut(s) 153, 177
EcoT22I ATGCAT 1 cut(s) 1509
EcoT38I GRGCYC 2 cut(s) 963, 1020
ErhI CCWWGG 2 cut(s) 153, 177
FalI AAGNNNNNCTT 8 cut(s) 295, 327, 340, 372, 1098, 1130, 1101, 1133
FaqI GGGAC 3 cut(s) 843, 1541, 1730
FbaI TGATCA 3 cut(s) 415, 1150, 1281
Fnu4HI GCNGC 6 cut(s) 705, 752, 983, 1227, 1265, 1482
FokI GGATG 2 cut(s) 925, 1625
FriOI GRGCYC 2 cut(s) 963, 1020
Fsp4HI GCNGC 6 cut(s) 705, 752, 983, 1227, 1265, 1482
FspBI CTAG 4 cut(s) 41, 909, 989, 1052
GlaI GCGC 2 cut(s) 299, 484
GluI GCNGC 6 cut(s) 705, 752, 983, 1227, 1265, 1482
HaeII RGCGCY 1 cut(s) 301
HaeIII GGCC 1 cut(s) 352
HhaI GCGC 2 cut(s) 300, 485
Hin6I GCGC 2 cut(s) 298, 483
HinP1I GCGC 2 cut(s) 298, 483
HincII GTYRAC 2 cut(s) 1083, 1763
HindII GTYRAC 2 cut(s) 1083, 1763
HindIII AAGCTT 1 cut(s) 1287
HpaI GTTAAC 1 cut(s) 1083
HphI GGTGA 1 cut(s) 1145
Hpy166II GTNNAC 3 cut(s) 1083, 1332, 1763
Hpy188III TCNNGA 4 cut(s) 303, 989, 1148, 1703
Hpy8I GTNNAC 3 cut(s) 1083, 1332, 1763
HpyCH4III ACNGT 4 cut(s) 1080, 1278, 1357, 1676
HpyCH4IV ACGT 2 cut(s) 1695, 1765
HpyF10VI GCNNNNNNNGC 7 cut(s) 539, 586, 656, 982, 1132, 1426, 1487
HpyF3I CTNAG 5 cut(s) 320, 534, 651, 747, 1466
HpySE526I ACGT 2 cut(s) 1695, 1765
HspAI GCGC 2 cut(s) 298, 483
KpnI GGTACC 1 cut(s) 1597
Ksp22I TGATCA 3 cut(s) 415, 1150, 1281
KspAI GTTAAC 1 cut(s) 1083
Kzo9I GATC 6 cut(s) 415, 628, 673, 1150, 1281, 1753
LguI GCTCTTC 1 cut(s) 1104
LmnI GCTCC 1 cut(s) 1015
Lsp1109I GCAGC 6 cut(s) 716, 738, 994, 1213, 1251, 1493
LweI GCATC 4 cut(s) 190, 262, 325, 589
MaeI CTAG 4 cut(s) 41, 909, 989, 1052
MaeII ACGT 2 cut(s) 1695, 1765
MaeIII GTNAC 2 cut(s) 368, 1094
MalI GATC 6 cut(s) 417, 630, 675, 1152, 1283, 1755
MboI GATC 6 cut(s) 415, 628, 673, 1150, 1281, 1753
MhlI GDGCHC 3 cut(s) 272, 963, 1020
MlyI GAGTC 3 cut(s) 335, 620, 1384
MmeI TCCRAC 2 cut(s) 534, 1161
MnlI CCTC 8 cut(s) 268, 363, 455, 1039, 1177, 1374, 1584, 1648
Mph1103I ATGCAT 1 cut(s) 1509
MroXI GAANNNNTTC 1 cut(s) 1113
MseI TTAA 6 cut(s) 489, 522, 1028, 1082, 1578, 1724
MslI CAYNNNNRTG 3 cut(s) 168, 321, 681
Mva1269I GAATGC 2 cut(s) 697, 1584
MvnI CGCG 1 cut(s) 483
MwoI GCNNNNNNNGC 7 cut(s) 539, 586, 656, 982, 1132, 1426, 1487
NcoI CCATGG 1 cut(s) 153
NdeII GATC 6 cut(s) 415, 628, 673, 1150, 1281, 1753
NlaIV GGNNCC 2 cut(s) 80, 1595
NmeAIII GCCGAG 1 cut(s) 1345
NmuCI GTSAC 2 cut(s) 368, 1094
NsiI ATGCAT 1 cut(s) 1509
NspI RCATGY 3 cut(s) 1222, 1330, 1511
NspV TTCGAA 1 cut(s) 634
PaeI GCATGC 1 cut(s) 1511
PagI TCATGA 1 cut(s) 1147
PceI AGGCCT 1 cut(s) 352
PciI ACATGT 1 cut(s) 1326
PciSI GCTCTTC 1 cut(s) 1104
PcsI WCGNNNNNNNCGW 1 cut(s) 1701
PctI GAATGC 2 cut(s) 697, 1584
PdmI GAANNNNTTC 1 cut(s) 1113
PfeI GAWTC 7 cut(s) 97, 737, 812, 919, 1193, 1202, 1271
PkrI GCNGC 6 cut(s) 706, 753, 984, 1228, 1266, 1483
PleI GAGTC 3 cut(s) 335, 619, 1384
PpsI GAGTC 3 cut(s) 335, 619, 1384
Ppu21I YACGTR 1 cut(s) 1696
PscI ACATGT 1 cut(s) 1326
Psp124BI GAGCTC 1 cut(s) 1020
PspN4I GGNNCC 2 cut(s) 80, 1595
PspPI GGNCC 3 cut(s) 221, 277, 1635
PsrI GAACNNNNNNTAC 2 cut(s) 1586, 1618
PstI CTGCAG 2 cut(s) 591, 927
PstNI CAGNNNCTG 1 cut(s) 1487
RsaI GTAC 1 cut(s) 1595
RsaNI GTAC 1 cut(s) 1594
RseI CAYNNNNRTG 3 cut(s) 168, 321, 681
SacI GAGCTC 1 cut(s) 1020
SapI GCTCTTC 1 cut(s) 1104
SaqAI TTAA 6 cut(s) 489, 522, 1028, 1082, 1578, 1724
SatI GCNGC 6 cut(s) 705, 752, 983, 1227, 1265, 1482
Sau3AI GATC 6 cut(s) 415, 628, 673, 1150, 1281, 1753
Sau96I GGNCC 3 cut(s) 221, 277, 1635
SchI GAGTC 3 cut(s) 335, 620, 1384
SduI GDGCHC 3 cut(s) 272, 963, 1020
SfaNI GCATC 4 cut(s) 190, 262, 325, 589
SfcI CTRYAG 3 cut(s) 587, 923, 1130
SfuI TTCGAA 1 cut(s) 634
SinI GGWCC 3 cut(s) 221, 277, 1635
SmiMI CAYNNNNRTG 3 cut(s) 168, 321, 681
SmlI CTYRAG 2 cut(s) 301, 1010
SmoI CTYRAG 2 cut(s) 301, 1010
SnaBI TACGTA 1 cut(s) 1696
SphI GCATGC 1 cut(s) 1511
SseBI AGGCCT 1 cut(s) 352
SsiI CCGC 1 cut(s) 702
SspI AATATT 1 cut(s) 606
SspMI CTAG 4 cut(s) 41, 909, 989, 1052
SstI GAGCTC 1 cut(s) 1020
StuI AGGCCT 1 cut(s) 352
StyI CCWWGG 2 cut(s) 153, 177
TaaI ACNGT 4 cut(s) 1080, 1278, 1357, 1676
TaiI ACGT 2 cut(s) 1698, 1768
TaqI TCGA 4 cut(s) 447, 623, 634, 1020
TfiI GAWTC 7 cut(s) 97, 737, 812, 919, 1193, 1202, 1271
Tru1I TTAA 6 cut(s) 489, 522, 1028, 1082, 1578, 1724
Tru9I TTAA 6 cut(s) 489, 522, 1028, 1082, 1578, 1724
TscAI CASTG 1 cut(s) 17
TseFI GTSAC 2 cut(s) 368, 1094
TseI GCWGC 6 cut(s) 704, 751, 982, 1226, 1264, 1481
Tsp45I GTSAC 2 cut(s) 368, 1094
TspGWI ACGGA 1 cut(s) 1748
TspRI CASTG 1 cut(s) 17
VpaK11BI GGWCC 3 cut(s) 221, 277, 1635
XapI RAATTY 5 cut(s) 437, 526, 619, 781, 1034
XbaI TCTAGA 1 cut(s) 988
XceI RCATGY 3 cut(s) 1222, 1330, 1511
XcmI CCANNNNNNNNNTGG 1 cut(s) 231
XmnI GAANNNNTTC 1 cut(s) 1113
XspI CTAG 4 cut(s) 41, 909, 989, 1052
Zsp2I ATGCAT 1 cut(s) 1509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.