Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0001722

Physical Location & Seq

Genomic Coordinates Forward (+)

4792955 .. 4793363

Gene Structure 409 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g05510.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGTTTGTTGATTGGGATAGGCTATGTGCCTTGCACAACGCCTTACTGGTGGAATCGTGGTCAATGAAAGCAGTCCTTTTCTACCTCATATGGATGCTTGTCATTTACATGTTAACCAGCACAAAGCAAACTATCCAGCGAGACACTGGCTTTAATTGTAGCAGCGGACTCGGTGGTGGGTTAGTGGAGTTAGGACGTTTATGTGCTGTATGCTGCACTTCACATATTATATATGCTTGTTGGAAATACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006082 GO:0006089 GO:0006810 GO:0006811 GO:0006812 GO:0006839 GO:0008150 GO:0008152 GO:0008324 GO:0009987 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0016020 GO:0019752 GO:0019866 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032787 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045016 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071704 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901615 GO:1903830 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

85

Amino Acids

9.59

Weight (kDa)

8.26

Isoelectric Point (pI)

49.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490
fragaria_vesca	FvH4_6g33230 FvH4_6g41730
malus_domestica	MD09G1119800.v1.1 MD09G1266100.v1.1 MD17G1110600.v1.1
prunus_persica	Prupe.3G163900_v2.0.a1 Prupe.3G204300_v2.0.a1 Prupe.3G204300_v2.0.a1
pyrus_communis	pycom07g05510
rosa_chinensis	RchiOBHm_Chr2g0139401 RchiOBHm_Chr2g0142951 RchiOBHm_Chr2g0157531
rosa_laevigata	RLG00000020000 RLG00000020995
rosa_multiflora	Rmu_co8048568.1_g000001 Rmu_sc0000083.1_g000018 Rmu_sc0002277.1_g000037 Rmu_sc0036081.1_g000001 Rmu_sc0036082.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092150 Rroxscaffold_2G00102200 Rroxscaffold_2G00147380
rosa_rugosa	Rorug02G0377400 Rorug02G0461800
rosa_samantha	Rh1CG268300 Rh2AG430400 Rh2AG525900 Rh2BG439400 Rh2BG540600 Rh2CG416100 Rh2CG510600 Rh2DG449400 Rh2DG549100 Rh4BG060600 Rh4CG066400 Rh5DG444200 Rh7DG175700
rosa_wichuraiana	Rw2G035150 Rw2G043560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	165
AflIII	ACRYGT	1 cut(s)	108
Alw26I	GTCTC	1 cut(s)	135
ApeKI	GCWGC	2 cut(s)	162, 213
BbvI	GCAGC	2 cut(s)	174, 200
BcgI	CGANNNNNNTGC	2 cut(s)	151, 185
BcoDI	GTCTC	1 cut(s)	135
BisI	GCNGC	2 cut(s)	163, 214
BlsI	GCNGC	2 cut(s)	164, 215
BmsI	GCATC	1 cut(s)	84
Bse1I	ACTGG	2 cut(s)	51, 151
BseGI	GGATG	1 cut(s)	99
BseNI	ACTGG	2 cut(s)	51, 151
BseXI	GCAGC	2 cut(s)	174, 200
BsgI	GTGCAG	1 cut(s)	199
BsmAI	GTCTC	1 cut(s)	135
BspACI	CCGC	1 cut(s)	165
BsrI	ACTGG	2 cut(s)	51, 151
BstF5I	GGATG	1 cut(s)	99
BstMAI	GTCTC	1 cut(s)	135
BstNSI	RCATGY	1 cut(s)	112
BstV1I	GCAGC	2 cut(s)	174, 200
BtsCI	GGATG	1 cut(s)	99
BtsIMutI	CAGTG	1 cut(s)	144
CviAII	CATG	1 cut(s)	109
CviJI	RGCY	2 cut(s)	22, 150
CviKI_1	RGCY	2 cut(s)	22, 150
FaeI	CATG	1 cut(s)	112
FalI	AAGNNNNNCTT	2 cut(s)	60, 92
FatI	CATG	1 cut(s)	108
FauNDI	CATATG	1 cut(s)	89
Fnu4HI	GCNGC	2 cut(s)	163, 214
FokI	GGATG	1 cut(s)	106
Fsp4HI	GCNGC	2 cut(s)	163, 214
GluI	GCNGC	2 cut(s)	163, 214
Hin1II	CATG	1 cut(s)	112
HincII	GTYRAC	1 cut(s)	114
HindII	GTYRAC	1 cut(s)	114
HinfI	GANTC	2 cut(s)	53, 168
HpaI	GTTAAC	1 cut(s)	114
Hpy166II	GTNNAC	1 cut(s)	114
Hpy8I	GTNNAC	1 cut(s)	114
HpyCH4IV	ACGT	1 cut(s)	196
HpyCH4V	TGCA	2 cut(s)	34, 216
HpySE526I	ACGT	1 cut(s)	196
Hsp92II	CATG	1 cut(s)	112
KspAI	GTTAAC	1 cut(s)	114
LpnPI	CCDG	4 cut(s)	32, 130, 132, 149
Lsp1109I	GCAGC	2 cut(s)	174, 200
LweI	GCATC	1 cut(s)	84
MaeII	ACGT	1 cut(s)	196
MluCI	AATT	1 cut(s)	154
MlyI	GAGTC	1 cut(s)	162
MmeI	TCCRAC	1 cut(s)	221
MnlI	CCTC	1 cut(s)	95
MseI	TTAA	2 cut(s)	113, 153
MslI	CAYNNNNRTG	2 cut(s)	92, 107
MspA1I	CMGCKG	1 cut(s)	165
NdeI	CATATG	1 cut(s)	89
NlaIII	CATG	1 cut(s)	112
NspI	RCATGY	1 cut(s)	112
PciI	ACATGT	1 cut(s)	108
PfeI	GAWTC	1 cut(s)	53
PkrI	GCNGC	2 cut(s)	164, 215
PleI	GAGTC	1 cut(s)	162
PpsI	GAGTC	1 cut(s)	162
PscI	ACATGT	1 cut(s)	108
RseI	CAYNNNNRTG	2 cut(s)	92, 107
SaqAI	TTAA	2 cut(s)	113, 153
SatI	GCNGC	2 cut(s)	163, 214
SchI	GAGTC	1 cut(s)	162
SetI	ASST	2 cut(s)	87, 199
SfaNI	GCATC	1 cut(s)	84
SmiMI	CAYNNNNRTG	2 cut(s)	92, 107
Sse9I	AATT	1 cut(s)	154
SsiI	CCGC	1 cut(s)	165
TaiI	ACGT	1 cut(s)	199
TasI	AATT	1 cut(s)	154
TfiI	GAWTC	1 cut(s)	53
Tru1I	TTAA	2 cut(s)	113, 153
Tru9I	TTAA	2 cut(s)	113, 153
TscAI	CASTG	1 cut(s)	151
TseI	GCWGC	2 cut(s)	162, 213
TspDTI	ATGAA	1 cut(s)	80
TspRI	CASTG	1 cut(s)	151
XceI	RCATGY	1 cut(s)	112
XcmI	CCANNNNNNNNNTGG	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.