Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001722

Physical Location & Seq

Genomic Coordinates Reverse (-)

70032051 .. 70034353

Gene Structure 2303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G043560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1791 bp

ATGGGCCGATTCAAATCTCTTCTCTTCATGTTGATCTTCCTAACTCTATCAAGGTCTTGTATGTCTGATTGGTGGTTCTTTTCTTCTTCTTCTTCTTCTAGCAAGACTACTGGCCAGAAACCTCCAGAAACTCTGCAAATATCCGGTGATGTTTCGGTTGAATTCTCCATGAAAGCTTTCCACAATGAAAAGGCAATTGAACGAATAGAAGAGGTTGATAAAAGAAAACTGAAATCTTGTTGGGATGATGCTTATAAAGCACTAGTTACATCATGCTCCGAAATTTCCAGTGACAAGAATGATATGAAGAAGAGGTTTTCTTGGGAACTAAGCAACTGCTTTCAGAAGGACATCGGAAGGTCTCCTTTTCCTACGTGCCGTGAAGGCTCTCCCATGAAAGATTGCCTTACAAAATTGGACGACAGTGCTATTCAGACTTACCGGGCATTCTTCCTCGAGACCGAGTCTATTTGCTATCAGTTACAGTCTCATGTATTCAGGGCTGAGACAGAAAAGTTGGTGAATGAATTGGTGAAGTCAGCTGATTATGCAGAGGGCAAATTAGACACCATAGCAGAACAATCAGAGAAATTGTTGGAGGGTTCAAAAAATATACACATATCTTTGACTTCAATTGACAAGCAGACACAAGAAATGGCTCAAACTTCCAAGAAAGTTGGTGATCAAATTGGTAATATAGTGAAGCAGTCAGAGGAAATGTTTGAGCAATCTGAGAAGATTGCTGCATCTCAGTTAGAATTGCAAAAAGGGCAAGACAAAATGAAGGAAAATTTGCAAGAGGGCATGGAAGTGATTCATGAGTCTTATCATGCTCTAGGTAAAGAAATACACAGTTTACAGAACGAGACTATTGAAATAGAGAAGAAGGTAACCGAAGTTGGCGACACCGTGTCTACAAAGATGAATAGCCTCCAAAGTAAGGCTGATGATATTAGCAATGTAACAGAGATTTCCTTGGAAAAGCAAAAAGAACTTCTGGAAGGTCAATCCGAAGCTCTTGACGGGCTTCAGTCACTAACTAAATTCCAGGTTCAAGCTCTAGAAGAGAGCAGGGGTATTTTGCAGCAATTGGCTAAATTTGGTCGTGAACAGCAAGAAGAGCTACTTCGGCAACAAGAACAGATTAAACAAGGCCATGACAATCTGGTTAAAAATTCGAAGTCCATACTGGCAGCTCAGGAAGCTTTTGAACAAAAGCAAGAAACCATGTTTGTTGCTTTGGAAAAGCTATTCAAATTGCACAATGCCTTGTTGCTCGAATCGAGATCAATCAAAGCTTTCTTTCTTTATTCCATATCGATGTTTGTCATCTACTTGTCGACCAGCACAAAGCAAACTTACAAAGTGAGACCCATACTTTACATAGGTCTATGCGTTGCATTTTTGATTGAATTAGCAACGCTTAGGTTTTCAAGAAATGGAGTAGAGCAACAGACTTTGATAGTCAATGGTATTAGGCTCCTTTATGTGTTGTTTTCTTTAGTTCTGGTAGTATACGCCGCCTTCACATATAGGGACTATGAAATGCTGAACTACAACATGCTGAAAAATCTAACAGAGGAGTTTCTAAGGTTTCAAAAAAATGCTGCTTCGCCATTGGTTAGCGATGACTCATCAGATGATGATAATGATGACTCGGACTCGATTACATCTGTTGACACTGAAAACCTTATGGACCACTCCTCCTATCATATACATGAGGAGGTTGAAGATAATTCAAATCTTATTTCTTCGAGTAATAGAAGATATAATCTCCGCAGTCGTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

596

Amino Acids

68.21

Weight (kDa)

5.26

Isoelectric Point (pI)

61.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490
fragaria_vesca	FvH4_6g33230 FvH4_6g41730
malus_domestica	MD09G1119800.v1.1 MD09G1266100.v1.1 MD17G1110600.v1.1
prunus_persica	Prupe.3G163900_v2.0.a1 Prupe.3G204300_v2.0.a1 Prupe.3G204300_v2.0.a1
pyrus_communis	pycom07g05510
rosa_chinensis	RchiOBHm_Chr2g0139401 RchiOBHm_Chr2g0142951 RchiOBHm_Chr2g0157531
rosa_laevigata	RLG00000020000 RLG00000020995
rosa_multiflora	Rmu_co8048568.1_g000001 Rmu_sc0000083.1_g000018 Rmu_sc0002277.1_g000037 Rmu_sc0036081.1_g000001 Rmu_sc0036082.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092150 Rroxscaffold_2G00102200 Rroxscaffold_2G00147380
rosa_rugosa	Rorug02G0377400 Rorug02G0461800
rosa_samantha	Rh1CG268300 Rh2AG430400 Rh2AG525900 Rh2BG439400 Rh2BG540600 Rh2CG416100 Rh2CG510600 Rh2DG449400 Rh2DG549100 Rh4BG060600 Rh4CG066400 Rh5DG444200 Rh7DG175700
rosa_wichuraiana	Rw2G035150 Rw2G043560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	255
AccI	GTMKAC	3 cut(s)	914, 1340, 1515
AciI	CCGC	2 cut(s)	1521, 1777
AcoI	YGGCCR	1 cut(s)	112
AcsI	RAATTY	6 cut(s)	161, 282, 790, 1043, 1097, 1174
AcuI	CTGAAG	1 cut(s)	1013
AfiI	CCNNNNNNNGG	1 cut(s)	940
AhdI	GACNNNNNGTC	1 cut(s)	910
AhlI	ACTAGT	1 cut(s)	262
AjnI	CCWGG	1 cut(s)	1047
AluBI	AGCT	9 cut(s)	176, 542, 1016, 1058, 1123, 1196, 1205, 1249, 1298
AluI	AGCT	9 cut(s)	176, 542, 1016, 1058, 1123, 1196, 1205, 1249, 1298
Alw26I	GTCTC	6 cut(s)	366, 452, 492, 500, 860, 1363
Ama87I	CYCGRG	1 cut(s)	455
AoxI	GGCC	3 cut(s)	4, 112, 1153
ApeKI	GCWGC	4 cut(s)	743, 1084, 1193, 1607
ApoI	RAATTY	6 cut(s)	161, 282, 790, 1043, 1097, 1174
Asp700I	GAANNNNTTC	2 cut(s)	176, 813
AspS9I	GGNCC	2 cut(s)	4, 1696
AsuC2I	CCSGG	1 cut(s)	443
AsuHPI	GGTGA	4 cut(s)	158, 532, 544, 692
AsuII	TTCGAA	1 cut(s)	1178
AvaI	CYCGRG	1 cut(s)	455
AvaII	GGWCC	1 cut(s)	1696
BalI	TGGCCA	1 cut(s)	114
BbvI	GCAGC	4 cut(s)	730, 1096, 1205, 1594
BceAI	ACGGC	1 cut(s)	363
BciT130I	CCWGG	1 cut(s)	1049
BclI	TGATCA	1 cut(s)	682
BcnI	CCSGG	1 cut(s)	443
BcoDI	GTCTC	6 cut(s)	366, 452, 492, 500, 860, 1363
BcuI	ACTAGT	1 cut(s)	262
BfaI	CTAG	4 cut(s)	99, 263, 836, 1061
BglI	GCCNNNNNGGC	1 cut(s)	384
BisI	GCNGC	5 cut(s)	744, 1085, 1194, 1521, 1608
BlsI	GCNGC	5 cut(s)	745, 1086, 1195, 1522, 1609
Bme1390I	CCNGG	2 cut(s)	443, 1049
Bme18I	GGWCC	1 cut(s)	1696
BmeRI	GACNNNNNGTC	1 cut(s)	910
BmeT110I	CYCGRG	1 cut(s)	455
BmgT120I	GGNCC	2 cut(s)	4, 1696
BmiI	GGNNCC	1 cut(s)	1481
BmrFI	CCNGG	2 cut(s)	443, 1049
BmsI	GCATC	2 cut(s)	238, 755
BpmI	CTGGAG	1 cut(s)	108
Bpu10I	CCTNAGC	2 cut(s)	1197, 1424
Bpu14I	TTCGAA	1 cut(s)	1178
BpuMI	CCSGG	1 cut(s)	443
Bsa29I	ATCGAT	1 cut(s)	1319
BsaAI	YACGTR	1 cut(s)	375
BsaBI	GATNNNNATC	1 cut(s)	13
BsaI	GGTCTC	3 cut(s)	366, 452, 1363
BsaJI	CCNNGG	1 cut(s)	975
BsaWI	WCCGGW	1 cut(s)	143
BsaXI	ACNNNNNCTCC	2 cut(s)	1688, 1718
Bsc4I	CCNNNNNNNGG	1 cut(s)	940
Bse1I	ACTGG	3 cut(s)	115, 288, 1194
Bse3DI	GCAATG	1 cut(s)	964
Bse8I	GATNNNNATC	1 cut(s)	13
BseBI	CCWGG	1 cut(s)	1049
BseCI	ATCGAT	1 cut(s)	1319
BseDI	CCNNGG	1 cut(s)	975
BseGI	GGATG	1 cut(s)	250
BseJI	GATNNNNATC	1 cut(s)	13
BseLI	CCNNNNNNNGG	1 cut(s)	940
BseMI	GCAATG	1 cut(s)	964
BseMII	CTCAG	4 cut(s)	495, 723, 764, 1211
BseNI	ACTGG	3 cut(s)	115, 288, 1194
BseRI	GAGGAG	3 cut(s)	1595, 1693, 1736
BseXI	GCAGC	4 cut(s)	730, 1096, 1205, 1594
BshFI	GGCC	3 cut(s)	6, 114, 1155
BshVI	ATCGAT	1 cut(s)	1319
BsiHKCI	CYCGRG	1 cut(s)	455
BsiSI	CCGG	2 cut(s)	144, 442
BslFI	GGGAC	1 cut(s)	1550
BslI	CCNNNNNNNGG	1 cut(s)	940
BsmAI	GTCTC	6 cut(s)	366, 452, 492, 500, 860, 1363
BsmFI	GGGAC	1 cut(s)	1550
BsmI	GAATGC	1 cut(s)	446
BsnI	GGCC	3 cut(s)	6, 114, 1155
Bso31I	GGTCTC	3 cut(s)	366, 452, 1363
BsoBI	CYCGRG	1 cut(s)	455
Bsp119I	TTCGAA	1 cut(s)	1178
Bsp143I	GATC	3 cut(s)	33, 682, 1286
BspACI	CCGC	2 cut(s)	1521, 1777
BspANI	GGCC	3 cut(s)	6, 114, 1155
BspCNI	CTCAG	4 cut(s)	496, 724, 763, 1210
BspDI	ATCGAT	1 cut(s)	1319
BspHI	TCATGA	1 cut(s)	817
BspLI	GGNNCC	1 cut(s)	1481
BspQI	GCTCTTC	1 cut(s)	1113
BspT104I	TTCGAA	1 cut(s)	1178
BspTNI	GGTCTC	3 cut(s)	366, 452, 1363
BsrDI	GCAATG	1 cut(s)	964
BsrI	ACTGG	3 cut(s)	115, 288, 1194
BssECI	CCNNGG	1 cut(s)	975
BssMI	GATC	3 cut(s)	33, 682, 1286
BssNAI	GTATAC	1 cut(s)	1516
BssT1I	CCWWGG	1 cut(s)	975
Bst1107I	GTATAC	1 cut(s)	1516
Bst2UI	CCWGG	1 cut(s)	1049
Bst4CI	ACNGT	4 cut(s)	425, 486, 854, 910
Bst6I	CTCTTC	6 cut(s)	24, 29, 204, 305, 1059, 1113
BstBAI	YACGTR	1 cut(s)	375
BstBI	TTCGAA	1 cut(s)	1178
BstDEI	CTNAG	7 cut(s)	329, 504, 732, 750, 1197, 1424, 1589
BstEII	GGTNACC	1 cut(s)	889
BstF5I	GGATG	1 cut(s)	250
BstKTI	GATC	3 cut(s)	36, 685, 1289
BstMAI	GTCTC	6 cut(s)	366, 452, 492, 500, 860, 1363
BstMBI	GATC	3 cut(s)	33, 682, 1286
BstMWI	GCNNNNNNNGC	7 cut(s)	257, 384, 548, 769, 1120, 1129, 1202
BstNI	CCWGG	1 cut(s)	1049
BstNSI	RCATGY	1 cut(s)	1564
BstPI	GGTNACC	1 cut(s)	889
BstSCI	CCNGG	2 cut(s)	441, 1047
BstV1I	GCAGC	4 cut(s)	730, 1096, 1205, 1594
BstZ17I	GTATAC	1 cut(s)	1516
Bsu15I	ATCGAT	1 cut(s)	1319
BsuRI	GGCC	3 cut(s)	6, 114, 1155
BsuTUI	ATCGAT	1 cut(s)	1319
BtgZI	GCGATG	1 cut(s)	1641
BtsCI	GGATG	1 cut(s)	250
BtsIMutI	CAGTG	3 cut(s)	295, 430, 1680
CciI	TCATGA	1 cut(s)	817
Cfr13I	GGNCC	2 cut(s)	4, 1696
ClaI	ATCGAT	1 cut(s)	1319
DdeI	CTNAG	7 cut(s)	329, 504, 732, 750, 1197, 1424, 1589
DpnI	GATC	3 cut(s)	35, 684, 1288
DpnII	GATC	3 cut(s)	33, 682, 1286
DriI	GACNNNNNGTC	1 cut(s)	910
EaeI	YGGCCR	1 cut(s)	112
Eam1104I	CTCTTC	6 cut(s)	24, 29, 204, 305, 1059, 1113
Eam1105I	GACNNNNNGTC	1 cut(s)	910
EarI	CTCTTC	6 cut(s)	24, 29, 204, 305, 1059, 1113
Eco130I	CCWWGG	1 cut(s)	975
Eco31I	GGTCTC	3 cut(s)	366, 452, 1363
Eco47I	GGWCC	1 cut(s)	1696
Eco57I	CTGAAG	1 cut(s)	1013
Eco88I	CYCGRG	1 cut(s)	455
Eco91I	GGTNACC	1 cut(s)	889
EcoO65I	GGTNACC	1 cut(s)	889
EcoRI	GAATTC	1 cut(s)	161
EcoRII	CCWGG	1 cut(s)	1047
EcoT14I	CCWWGG	1 cut(s)	975
ErhI	CCWWGG	1 cut(s)	975
FalI	AAGNNNNNCTT	6 cut(s)	349, 381, 390, 422, 1110, 1142
FaqI	GGGAC	1 cut(s)	1550
FbaI	TGATCA	1 cut(s)	682
FblI	GTMKAC	3 cut(s)	914, 1340, 1515
Fnu4HI	GCNGC	5 cut(s)	744, 1085, 1194, 1521, 1608
FokI	GGATG	1 cut(s)	257
Fsp4HI	GCNGC	5 cut(s)	744, 1085, 1194, 1521, 1608
FspBI	CTAG	4 cut(s)	99, 263, 836, 1061
GluI	GCNGC	5 cut(s)	744, 1085, 1194, 1521, 1608
GsuI	CTGGAG	1 cut(s)	108
HaeIII	GGCC	3 cut(s)	6, 114, 1155
HapII	CCGG	2 cut(s)	144, 442
HincII	GTYRAC	2 cut(s)	1341, 1678
HindII	GTYRAC	2 cut(s)	1341, 1678
HindIII	AAGCTT	3 cut(s)	174, 1203, 1296
HinfI	GANTC	8 cut(s)	9, 464, 814, 821, 1280, 1631, 1655, 1661
HpaII	CCGG	2 cut(s)	144, 442
HphI	GGTGA	4 cut(s)	158, 532, 544, 692
Hpy166II	GTNNAC	6 cut(s)	857, 915, 1109, 1341, 1516, 1678
Hpy8I	GTNNAC	6 cut(s)	857, 915, 1109, 1341, 1516, 1678
Hpy99I	CGWCG	1 cut(s)	1788
HpyAV	CCTTC	7 cut(s)	340, 351, 377, 778, 880, 995, 1534
HpyCH4III	ACNGT	4 cut(s)	425, 486, 854, 910
HpyCH4IV	ACGT	1 cut(s)	374
HpyCH4V	TGCA	8 cut(s)	136, 551, 746, 763, 796, 1084, 1261, 1400
HpyF10VI	GCNNNNNNNGC	7 cut(s)	257, 384, 548, 769, 1120, 1129, 1202
HpyF3I	CTNAG	7 cut(s)	329, 504, 732, 750, 1197, 1424, 1589
HpySE526I	ACGT	1 cut(s)	374
Ksp22I	TGATCA	1 cut(s)	682
Kzo9I	GATC	3 cut(s)	33, 682, 1286
LguI	GCTCTTC	1 cut(s)	1113
LmnI	GCTCC	2 cut(s)	281, 1485
Lsp1109I	GCAGC	4 cut(s)	730, 1096, 1205, 1594
LweI	GCATC	2 cut(s)	238, 755
MaeI	CTAG	4 cut(s)	99, 263, 836, 1061
MaeII	ACGT	1 cut(s)	374
MaeIII	GTNAC	6 cut(s)	265, 290, 480, 889, 961, 1032
MalI	GATC	3 cut(s)	35, 684, 1288
MboI	GATC	3 cut(s)	33, 682, 1286
MfeI	CAATTG	3 cut(s)	195, 633, 1088
MlsI	TGGCCA	1 cut(s)	114
MluNI	TGGCCA	1 cut(s)	114
MlyI	GAGTC	5 cut(s)	473, 830, 1625, 1649, 1655
MmeI	TCCRAC	1 cut(s)	576
Mox20I	TGGCCA	1 cut(s)	114
MroXI	GAANNNNTTC	2 cut(s)	176, 813
MscI	TGGCCA	1 cut(s)	114
MseI	TTAA	3 cut(s)	1146, 1170, 1789
MslI	CAYNNNNRTG	3 cut(s)	809, 1319, 1716
Msp20I	TGGCCA	1 cut(s)	114
MspA1I	CMGCKG	1 cut(s)	542
MspI	CCGG	2 cut(s)	144, 442
MspR9I	CCNGG	2 cut(s)	443, 1049
MunI	CAATTG	3 cut(s)	195, 633, 1088
Mva1269I	GAATGC	1 cut(s)	446
MvaI	CCWGG	1 cut(s)	1049
MwoI	GCNNNNNNNGC	7 cut(s)	257, 384, 548, 769, 1120, 1129, 1202
NciI	CCSGG	1 cut(s)	443
NdeII	GATC	3 cut(s)	33, 682, 1286
NlaIV	GGNNCC	1 cut(s)	1481
NmuCI	GTSAC	2 cut(s)	290, 1032
NspI	RCATGY	1 cut(s)	1564
NspV	TTCGAA	1 cut(s)	1178
PaeR7I	CTCGAG	1 cut(s)	455
PagI	TCATGA	1 cut(s)	817
PciSI	GCTCTTC	1 cut(s)	1113
PctI	GAATGC	1 cut(s)	446
PdmI	GAANNNNTTC	2 cut(s)	176, 813
PfeI	GAWTC	3 cut(s)	9, 814, 1280
PflFI	GACNNNGTC	1 cut(s)	463
PkrI	GCNGC	5 cut(s)	745, 1086, 1195, 1522, 1609
PleI	GAGTC	5 cut(s)	472, 829, 1625, 1649, 1655
PpsI	GAGTC	5 cut(s)	472, 829, 1625, 1649, 1655
Ppu21I	YACGTR	1 cut(s)	375
PsiI	TTATAA	1 cut(s)	255
Psp6I	CCWGG	1 cut(s)	1047
PspEI	GGTNACC	1 cut(s)	889
PspGI	CCWGG	1 cut(s)	1047
PspN4I	GGNNCC	1 cut(s)	1481
PspPI	GGNCC	2 cut(s)	4, 1696
PsyI	GACNNNGTC	1 cut(s)	463
PvuII	CAGCTG	1 cut(s)	542
RseI	CAYNNNNRTG	3 cut(s)	809, 1319, 1716
SalI	GTCGAC	1 cut(s)	1339
SapI	GCTCTTC	1 cut(s)	1113
SaqAI	TTAA	3 cut(s)	1146, 1170, 1789
SatI	GCNGC	5 cut(s)	744, 1085, 1194, 1521, 1608
Sau3AI	GATC	3 cut(s)	33, 682, 1286
Sau96I	GGNCC	2 cut(s)	4, 1696
SchI	GAGTC	5 cut(s)	473, 830, 1625, 1649, 1655
ScrFI	CCNGG	2 cut(s)	443, 1049
SfaNI	GCATC	2 cut(s)	238, 755
Sfr274I	CTCGAG	1 cut(s)	455
SfuI	TTCGAA	1 cut(s)	1178
SinI	GGWCC	1 cut(s)	1696
SlaI	CTCGAG	1 cut(s)	455
SmiMI	CAYNNNNRTG	3 cut(s)	809, 1319, 1716
SmlI	CTYRAG	1 cut(s)	455
SmoI	CTYRAG	1 cut(s)	455
SpeI	ACTAGT	1 cut(s)	262
SsiI	CCGC	2 cut(s)	1521, 1777
SspMI	CTAG	4 cut(s)	99, 263, 836, 1061
StyD4I	CCNGG	2 cut(s)	441, 1047
StyI	CCWWGG	1 cut(s)	975
TaaI	ACNGT	4 cut(s)	425, 486, 854, 910
TaiI	ACGT	1 cut(s)	377
TaqI	TCGA	8 cut(s)	456, 1178, 1278, 1283, 1319, 1340, 1664, 1754
TaqII	GACCGA	1 cut(s)	476
TauI	GCSGC	1 cut(s)	1523
TfiI	GAWTC	3 cut(s)	9, 814, 1280
Tru1I	TTAA	3 cut(s)	1146, 1170, 1789
Tru9I	TTAA	3 cut(s)	1146, 1170, 1789
TscAI	CASTG	3 cut(s)	295, 430, 1687
TseFI	GTSAC	2 cut(s)	290, 1032
TseI	GCWGC	4 cut(s)	743, 1084, 1193, 1607
Tsp45I	GTSAC	2 cut(s)	290, 1032
TspRI	CASTG	3 cut(s)	295, 430, 1687
Tth111I	GACNNNGTC	1 cut(s)	463
VpaK11BI	GGWCC	1 cut(s)	1696
XapI	RAATTY	6 cut(s)	161, 282, 790, 1043, 1097, 1174
XbaI	TCTAGA	1 cut(s)	1060
XceI	RCATGY	1 cut(s)	1564
XhoI	CTCGAG	1 cut(s)	455
XmiI	GTMKAC	3 cut(s)	914, 1340, 1515
XmnI	GAANNNNTTC	2 cut(s)	176, 813
XspI	CTAG	4 cut(s)	99, 263, 836, 1061

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.