Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001722

Physical Location & Seq

Genomic Coordinates Forward (+)

57007794 .. 57009047

Gene Structure 1254 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50997

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGCCATCAGTTGCAGTTAAGTATTCTCAGTATGCAGAAGGCAAGTTGGAAATAATTGAAGAGAAGGCAGAGCATCTACTGCAGGGGTCAAATCAAATATTTGAGTCTTTGAATTCGATTGATCTTCGAACACAGCAAGTTGCTCAGACTGCACATAATGTGGAAGATCATATAGATGTGGTGTTGAAGCATTCCGCAACAGTTTATGAGCAATCAAGGAAAATCCAAGATTCTCAATCTGAGCTGCAAGAAGGACAAGTAGAAATGAAGAAAAATTTGAAGGAAGGAATGGCAATGTTGCAGGATTCATACAGCCATTTGGGACAAGAAATCGATAACTTGAAAAATGAAGCTGTTGAAGTTGAAAAAGAGATAACCAAAGTCGGAGACCAAATGTCGTCTAGGATGGAGAATCTGCAGGTCAAAGCAGATGACATTAGGAATATGGCAGGGCTCTCTTTGGACAAGCAAAAGCAGCTTTTAGATGGACAAACAACAGCTTTCAAGGAGCTCGACTTTTTAACCAAATTTCAATCTGAGGCACTAGAAGAGAGCAGGAAAACCCTACAACGGTTAACTGAATATGGTCACAGACAACAAGAAGAGCTTCTTCAGAAGCAACTACAGCTTCAAAAAGTTCATGATCACCTGATGGAAAACTCAAAGTCAATGTTGGAGGCACAGGAATCTTTTGAATCAAAGCAAGCCAGCATGTTCACCGCATTAGACAAGCTATTGGCTTTGCACAATGATATGCTGCTTGAATCACGGTTGATCAAAGCTTTCTTTATTTACTCTATATCAATCTTTGCTATCTACATGTTCACAAGCACAAAGCGAACATACACAGTTAGACCTCGGCTATATATCGGTACATACACTGTCTTACTACAAAAAATAAAACTACAGAAACATATCAAGTTCATAAACTTATATTTACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0007275 GO:0008150 GO:0009553 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0016020 GO:0016021 GO:0022414 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0042802 GO:0044425 GO:0044459 GO:0044464 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

314

Amino Acids

36.39

Weight (kDa)

5.97

Isoelectric Point (pI)

54.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490
fragaria_vesca	FvH4_6g33230 FvH4_6g41730
malus_domestica	MD09G1119800.v1.1 MD09G1266100.v1.1 MD17G1110600.v1.1
prunus_persica	Prupe.3G163900_v2.0.a1 Prupe.3G204300_v2.0.a1 Prupe.3G204300_v2.0.a1
pyrus_communis	pycom07g05510
rosa_chinensis	RchiOBHm_Chr2g0139401 RchiOBHm_Chr2g0142951 RchiOBHm_Chr2g0157531
rosa_laevigata	RLG00000020000 RLG00000020995
rosa_multiflora	Rmu_co8048568.1_g000001 Rmu_sc0000083.1_g000018 Rmu_sc0002277.1_g000037 Rmu_sc0036081.1_g000001 Rmu_sc0036082.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092150 Rroxscaffold_2G00102200 Rroxscaffold_2G00147380
rosa_rugosa	Rorug02G0377400 Rorug02G0461800
rosa_samantha	Rh1CG268300 Rh2AG430400 Rh2AG525900 Rh2BG439400 Rh2BG540600 Rh2CG416100 Rh2CG510600 Rh2DG449400 Rh2DG549100 Rh4BG060600 Rh4CG066400 Rh5DG444200 Rh7DG175700
rosa_wichuraiana	Rw2G035150 Rw2G043560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	409
AciI	CCGC	2 cut(s)	195, 720
AcsI	RAATTY	3 cut(s)	112, 274, 527
AcuI	CTGAAG	1 cut(s)	596
AfaI	GTAC	1 cut(s)	874
AfiI	CCNNNNNNNGG	1 cut(s)	570
AflIII	ACRYGT	1 cut(s)	819
AhdI	GACNNNNNGTC	1 cut(s)	394
AluBI	AGCT	9 cut(s)	244, 353, 478, 500, 511, 607, 628, 733, 782
AluI	AGCT	9 cut(s)	244, 353, 478, 500, 511, 607, 628, 733, 782
Alw21I	GWGCWC	1 cut(s)	513
Alw26I	GTCTC	1 cut(s)	381
ApeKI	GCWGC	3 cut(s)	244, 475, 757
ApoI	RAATTY	3 cut(s)	112, 274, 527
Asp700I	GAANNNNTTC	1 cut(s)	606
AsuHPI	GGTGA	2 cut(s)	638, 709
AsuII	TTCGAA	1 cut(s)	127
BanII	GRGCYC	2 cut(s)	456, 513
Bbv12I	GWGCWC	1 cut(s)	513
BbvI	GCAGC	3 cut(s)	231, 487, 744
BccI	CCATC	4 cut(s)	13, 400, 479, 646
BclI	TGATCA	2 cut(s)	643, 774
BcoDI	GTCTC	1 cut(s)	381
BfaI	CTAG	2 cut(s)	402, 545
BfmI	CTRYAG	4 cut(s)	80, 416, 623, 905
BfuAI	ACCTGC	1 cut(s)	409
BisI	GCNGC	3 cut(s)	245, 476, 758
BlsI	GCNGC	3 cut(s)	246, 477, 759
BmeRI	GACNNNNNGTC	1 cut(s)	394
BmsI	GCATC	1 cut(s)	82
Bpu14I	TTCGAA	1 cut(s)	127
Bsa29I	ATCGAT	1 cut(s)	333
BsaI	GGTCTC	1 cut(s)	381
BsaJI	CCNNGG	1 cut(s)	857
Bsc4I	CCNNNNNNNGG	1 cut(s)	570
Bse3DI	GCAATG	1 cut(s)	300
BseCI	ATCGAT	1 cut(s)	333
BseDI	CCNNGG	1 cut(s)	857
BseGI	GGATG	1 cut(s)	411
BseLI	CCNNNNNNNGG	1 cut(s)	570
BseMI	GCAATG	1 cut(s)	300
BseMII	CTCAG	4 cut(s)	41, 158, 231, 528
BseXI	GCAGC	3 cut(s)	231, 487, 744
BsgI	GTGCAG	1 cut(s)	135
BshVI	ATCGAT	1 cut(s)	333
BsiHKAI	GWGCWC	1 cut(s)	513
BslFI	GGGAC	1 cut(s)	336
BslI	CCNNNNNNNGG	1 cut(s)	570
BsmAI	GTCTC	1 cut(s)	381
BsmFI	GGGAC	1 cut(s)	336
BsmI	GAATGC	1 cut(s)	190
Bso31I	GGTCTC	1 cut(s)	381
Bsp119I	TTCGAA	1 cut(s)	127
Bsp1286I	GDGCHC	2 cut(s)	456, 513
Bsp143I	GATC	4 cut(s)	121, 166, 643, 774
BspACI	CCGC	2 cut(s)	195, 720
BspCNI	CTCAG	4 cut(s)	40, 157, 232, 529
BspDI	ATCGAT	1 cut(s)	333
BspHI	TCATGA	1 cut(s)	640
BspMAI	CTGCAG	2 cut(s)	84, 420
BspMI	ACCTGC	1 cut(s)	409
BspQI	GCTCTTC	1 cut(s)	597
BspT104I	TTCGAA	1 cut(s)	127
BspTNI	GGTCTC	1 cut(s)	381
BsrDI	GCAATG	1 cut(s)	300
BssECI	CCNNGG	1 cut(s)	857
BssMI	GATC	4 cut(s)	121, 166, 643, 774
Bst4CI	ACNGT	5 cut(s)	202, 573, 771, 850, 883
Bst6I	CTCTTC	3 cut(s)	54, 543, 597
BstAPI	GCANNNNNTGC	1 cut(s)	79
BstBI	TTCGAA	1 cut(s)	127
BstC8I	GCNNGC	2 cut(s)	705, 709
BstDEI	CTNAG	4 cut(s)	27, 144, 240, 537
BstF5I	GGATG	1 cut(s)	411
BstKTI	GATC	4 cut(s)	124, 169, 646, 777
BstMAI	GTCTC	1 cut(s)	381
BstMBI	GATC	4 cut(s)	121, 166, 643, 774
BstMWI	GCNNNNNNNGC	4 cut(s)	79, 149, 475, 625
BstNSI	RCATGY	2 cut(s)	715, 823
BstSFI	CTRYAG	4 cut(s)	80, 416, 623, 905
BstV1I	GCAGC	3 cut(s)	231, 487, 744
Bsu15I	ATCGAT	1 cut(s)	333
BsuTUI	ATCGAT	1 cut(s)	333
BtsCI	GGATG	1 cut(s)	411
BtsIMutI	CAGTG	1 cut(s)	879
BveI	ACCTGC	1 cut(s)	409
Cac8I	GCNNGC	2 cut(s)	705, 709
CciI	TCATGA	1 cut(s)	640
ClaI	ATCGAT	1 cut(s)	333
Csp6I	GTAC	1 cut(s)	873
CviAII	CATG	3 cut(s)	641, 712, 820
CviQI	GTAC	1 cut(s)	873
DdeI	CTNAG	4 cut(s)	27, 144, 240, 537
DpnI	GATC	4 cut(s)	123, 168, 645, 776
DpnII	GATC	4 cut(s)	121, 166, 643, 774
DriI	GACNNNNNGTC	1 cut(s)	394
Eam1104I	CTCTTC	3 cut(s)	54, 543, 597
Eam1105I	GACNNNNNGTC	1 cut(s)	394
EarI	CTCTTC	3 cut(s)	54, 543, 597
Ecl136II	GAGCTC	1 cut(s)	511
Eco24I	GRGCYC	2 cut(s)	456, 513
Eco31I	GGTCTC	1 cut(s)	381
Eco53kI	GAGCTC	1 cut(s)	511
Eco57I	CTGAAG	1 cut(s)	596
EcoICRI	GAGCTC	1 cut(s)	511
EcoRI	GAATTC	1 cut(s)	112
EcoT38I	GRGCYC	2 cut(s)	456, 513
FaeI	CATG	3 cut(s)	644, 715, 823
FalI	AAGNNNNNCTT	4 cut(s)	591, 623, 594, 626
FaqI	GGGAC	1 cut(s)	336
FatI	CATG	3 cut(s)	640, 711, 819
FbaI	TGATCA	2 cut(s)	643, 774
Fnu4HI	GCNGC	3 cut(s)	245, 476, 758
FokI	GGATG	1 cut(s)	418
FriOI	GRGCYC	2 cut(s)	456, 513
Fsp4HI	GCNGC	3 cut(s)	245, 476, 758
FspBI	CTAG	2 cut(s)	402, 545
GluI	GCNGC	3 cut(s)	245, 476, 758
Hin1II	CATG	3 cut(s)	644, 715, 823
HincII	GTYRAC	1 cut(s)	576
HindII	GTYRAC	1 cut(s)	576
HindIII	AAGCTT	1 cut(s)	780
HinfI	GANTC	7 cut(s)	104, 230, 305, 412, 686, 695, 764
HpaI	GTTAAC	1 cut(s)	576
HphI	GGTGA	2 cut(s)	638, 709
Hpy166II	GTNNAC	3 cut(s)	576, 717, 825
Hpy188I	TCNGA	5 cut(s)	147, 241, 386, 538, 615
Hpy188III	TCNNGA	1 cut(s)	641
Hpy8I	GTNNAC	3 cut(s)	576, 717, 825
HpyAV	CCTTC	5 cut(s)	32, 58, 245, 274, 278
HpyCH4III	ACNGT	5 cut(s)	202, 573, 771, 850, 883
HpyCH4V	TGCA	8 cut(s)	14, 35, 82, 152, 247, 301, 418, 745
HpyF10VI	GCNNNNNNNGC	4 cut(s)	79, 149, 475, 625
HpyF3I	CTNAG	4 cut(s)	27, 144, 240, 537
Hsp92II	CATG	3 cut(s)	644, 715, 823
Ksp22I	TGATCA	2 cut(s)	643, 774
KspAI	GTTAAC	1 cut(s)	576
Kzo9I	GATC	4 cut(s)	121, 166, 643, 774
LguI	GCTCTTC	1 cut(s)	597
LmnI	GCTCC	1 cut(s)	508
LpnPI	CCDG	8 cut(s)	68, 287, 404, 435, 541, 662, 668, 721
Lsp1109I	GCAGC	3 cut(s)	231, 487, 744
LweI	GCATC	1 cut(s)	82
MaeI	CTAG	2 cut(s)	402, 545
MaeIII	GTNAC	1 cut(s)	587
MalI	GATC	4 cut(s)	123, 168, 645, 776
MboI	GATC	4 cut(s)	121, 166, 643, 774
MboII	GAAGA	7 cut(s)	71, 116, 176, 280, 560, 602, 614
MhlI	GDGCHC	2 cut(s)	456, 513
MluCI	AATT	4 cut(s)	54, 112, 274, 527
MlyI	GAGTC	1 cut(s)	113
MmeI	TCCRAC	3 cut(s)	27, 364, 654
MnlI	CCTC	3 cut(s)	532, 670, 867
MroXI	GAANNNNTTC	1 cut(s)	606
MseI	TTAA	3 cut(s)	18, 521, 575
MslI	CAYNNNNRTG	1 cut(s)	174
Mva1269I	GAATGC	1 cut(s)	190
MwoI	GCNNNNNNNGC	4 cut(s)	79, 149, 475, 625
NdeII	GATC	4 cut(s)	121, 166, 643, 774
NlaIII	CATG	3 cut(s)	644, 715, 823
NmeAIII	GCCGAG	1 cut(s)	838
NmuCI	GTSAC	1 cut(s)	587
NspI	RCATGY	2 cut(s)	715, 823
NspV	TTCGAA	1 cut(s)	127
PagI	TCATGA	1 cut(s)	640
PciI	ACATGT	1 cut(s)	819
PciSI	GCTCTTC	1 cut(s)	597
PctI	GAATGC	1 cut(s)	190
PdmI	GAANNNNTTC	1 cut(s)	606
PfeI	GAWTC	6 cut(s)	230, 305, 412, 686, 695, 764
PkrI	GCNGC	3 cut(s)	246, 477, 759
PleI	GAGTC	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	112
PscI	ACATGT	1 cut(s)	819
Psp124BI	GAGCTC	1 cut(s)	513
PstI	CTGCAG	2 cut(s)	84, 420
RsaI	GTAC	1 cut(s)	874
RsaNI	GTAC	1 cut(s)	873
RseI	CAYNNNNRTG	1 cut(s)	174
SacI	GAGCTC	1 cut(s)	513
SapI	GCTCTTC	1 cut(s)	597
SaqAI	TTAA	3 cut(s)	18, 521, 575
SatI	GCNGC	3 cut(s)	245, 476, 758
Sau3AI	GATC	4 cut(s)	121, 166, 643, 774
SchI	GAGTC	1 cut(s)	113
SduI	GDGCHC	2 cut(s)	456, 513
SfaNI	GCATC	1 cut(s)	82
SfcI	CTRYAG	4 cut(s)	80, 416, 623, 905
SfuI	TTCGAA	1 cut(s)	127
SmiMI	CAYNNNNRTG	1 cut(s)	174
Sse9I	AATT	4 cut(s)	54, 112, 274, 527
SsiI	CCGC	2 cut(s)	195, 720
SspI	AATATT	1 cut(s)	99
SspMI	CTAG	2 cut(s)	402, 545
SstI	GAGCTC	1 cut(s)	513
TaaI	ACNGT	5 cut(s)	202, 573, 771, 850, 883
TaqI	TCGA	4 cut(s)	116, 127, 333, 513
TasI	AATT	4 cut(s)	54, 112, 274, 527
TfiI	GAWTC	6 cut(s)	230, 305, 412, 686, 695, 764
Tru1I	TTAA	3 cut(s)	18, 521, 575
Tru9I	TTAA	3 cut(s)	18, 521, 575
TscAI	CASTG	1 cut(s)	886
TseFI	GTSAC	1 cut(s)	587
TseI	GCWGC	3 cut(s)	244, 475, 757
Tsp45I	GTSAC	1 cut(s)	587
TspDTI	ATGAA	5 cut(s)	281, 297, 363, 629, 913
TspRI	CASTG	1 cut(s)	886
XapI	RAATTY	3 cut(s)	112, 274, 527
XceI	RCATGY	2 cut(s)	715, 823
XmnI	GAANNNNTTC	1 cut(s)	606
XspI	CTAG	2 cut(s)	402, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.