Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001722

Physical Location & Seq

Genomic Coordinates Reverse (-)

71035062 .. 71036187

Gene Structure 1126 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG444200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGCAGAAGGCAAGTCTCTTCAATCAAATATTTGAGTCTTTGAATTCGATTGATCTTCGAACACAGCAAGTTGCTCAGACTGCACAAAATGTGGAAGATCATATAGATGTGGTGTTGAAGCATTCCGCAACAGTTTATGAGCAATCAAGGAAAATCCAAAATTCTCAATCTGAGCTGCAAGAAGGACAAGTAGAAATGAAGAAAAATTTGAAGGAAGGAATGGCAATGTTGCAGGATTCATACAGCCATTTGGGACAAGAAATCGATAACTTGAAAAATGAAGCTGTTGAAGTTGAAAAAGAGATAACCAAAGTCGGAGACCAAATGTCGTCTAGGATGGAGAATCTGCAGGTCAAAGCAGATGACATTAGGAATATGGCAGGGCTCTCTTTGGACAAGCAAAAGCAGCTTCTAGATGGACAAACAACAGCTCTCAAGGAGCTCGACTTTTTAACCAAATTTCAATCCGAGGCACTAGAAGAGAGCAGGAAAACCCTACAACGGTTAACTGAATATGGTCACAGACAACAAGAAGAGCTTCTTCAGAAGCAACTACAGCTTCAAAAAGTTCATGATCACCTGATGGAAAACTCAAAGTCAATGTTGGAAGCACAGGAATCTTTTGAATCAAAGCAAGCCAGCATGTTCACCGCATTAGACAAGCTATTGGCTTTGCACAATGCTATGCTGCTTGAATCACGGTTGATCAAAGCTTTCTTTATTTACTCTATATCAATCTTTGCTATCTACATGTTCACAAGCACAAAGCGAACATACACAGTTAGACCTCGGCTATATATCGGGCTGTGTTTGACTCTCTTAGTAGAAGTAGCAATACTTCGGCTCACAGGGCATGATATTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0007275 GO:0008150 GO:0009553 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0016020 GO:0016021 GO:0022414 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0042802 GO:0044425 GO:0044459 GO:0044464 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

288

Amino Acids

33.16

Weight (kDa)

5.71

Isoelectric Point (pI)

51.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490
fragaria_vesca	FvH4_6g33230 FvH4_6g41730
malus_domestica	MD09G1119800.v1.1 MD09G1266100.v1.1 MD17G1110600.v1.1
prunus_persica	Prupe.3G163900_v2.0.a1 Prupe.3G204300_v2.0.a1 Prupe.3G204300_v2.0.a1
pyrus_communis	pycom07g05510
rosa_chinensis	RchiOBHm_Chr2g0139401 RchiOBHm_Chr2g0142951 RchiOBHm_Chr2g0157531
rosa_laevigata	RLG00000020000 RLG00000020995
rosa_multiflora	Rmu_co8048568.1_g000001 Rmu_sc0000083.1_g000018 Rmu_sc0002277.1_g000037 Rmu_sc0036081.1_g000001 Rmu_sc0036082.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092150 Rroxscaffold_2G00102200 Rroxscaffold_2G00147380
rosa_rugosa	Rorug02G0377400 Rorug02G0461800
rosa_samantha	Rh1CG268300 Rh2AG430400 Rh2AG525900 Rh2BG439400 Rh2BG540600 Rh2CG416100 Rh2CG510600 Rh2DG449400 Rh2DG549100 Rh4BG060600 Rh4CG066400 Rh5DG444200 Rh7DG175700
rosa_wichuraiana	Rw2G035150 Rw2G043560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	340
AciI	CCGC	2 cut(s)	126, 651
AcsI	RAATTY	4 cut(s)	43, 160, 205, 458
AcuI	CTGAAG	1 cut(s)	527
AfiI	CCNNNNNNNGG	1 cut(s)	501
AflIII	ACRYGT	1 cut(s)	750
AhdI	GACNNNNNGTC	1 cut(s)	325
AluBI	AGCT	9 cut(s)	175, 284, 409, 431, 442, 538, 559, 664, 713
AluI	AGCT	9 cut(s)	175, 284, 409, 431, 442, 538, 559, 664, 713
Alw21I	GWGCWC	1 cut(s)	444
Alw26I	GTCTC	2 cut(s)	20, 312
ApeKI	GCWGC	3 cut(s)	175, 406, 688
ApoI	RAATTY	4 cut(s)	43, 160, 205, 458
Asp700I	GAANNNNTTC	1 cut(s)	537
AsuHPI	GGTGA	2 cut(s)	569, 640
AsuII	TTCGAA	1 cut(s)	58
BanII	GRGCYC	2 cut(s)	387, 444
BarI	GAAGNNNNNNTAC	4 cut(s)	819, 822, 851, 854
Bbv12I	GWGCWC	1 cut(s)	444
BbvI	GCAGC	3 cut(s)	162, 418, 675
BccI	CCATC	3 cut(s)	331, 410, 577
BclI	TGATCA	2 cut(s)	574, 705
BcoDI	GTCTC	2 cut(s)	20, 312
BfaI	CTAG	3 cut(s)	333, 413, 476
BfmI	CTRYAG	2 cut(s)	347, 554
BfuAI	ACCTGC	1 cut(s)	340
BisI	GCNGC	3 cut(s)	176, 407, 689
BlsI	GCNGC	3 cut(s)	177, 408, 690
BmeRI	GACNNNNNGTC	1 cut(s)	325
Bpu14I	TTCGAA	1 cut(s)	58
BpuEI	CTTGAG	1 cut(s)	419
Bsa29I	ATCGAT	1 cut(s)	264
BsaI	GGTCTC	1 cut(s)	312
BsaJI	CCNNGG	2 cut(s)	468, 788
Bsc4I	CCNNNNNNNGG	1 cut(s)	501
Bse3DI	GCAATG	1 cut(s)	231
BseCI	ATCGAT	1 cut(s)	264
BseDI	CCNNGG	2 cut(s)	468, 788
BseGI	GGATG	1 cut(s)	342
BseLI	CCNNNNNNNGG	1 cut(s)	501
BseMI	GCAATG	1 cut(s)	231
BseMII	CTCAG	2 cut(s)	89, 162
BseXI	GCAGC	3 cut(s)	162, 418, 675
BsgI	GTGCAG	1 cut(s)	66
BshVI	ATCGAT	1 cut(s)	264
BsiHKAI	GWGCWC	1 cut(s)	444
BslFI	GGGAC	1 cut(s)	267
BslI	CCNNNNNNNGG	1 cut(s)	501
BsmAI	GTCTC	2 cut(s)	20, 312
BsmFI	GGGAC	1 cut(s)	267
BsmI	GAATGC	1 cut(s)	121
Bso31I	GGTCTC	1 cut(s)	312
Bsp119I	TTCGAA	1 cut(s)	58
Bsp1286I	GDGCHC	2 cut(s)	387, 444
Bsp143I	GATC	4 cut(s)	52, 97, 574, 705
BspACI	CCGC	2 cut(s)	126, 651
BspCNI	CTCAG	2 cut(s)	88, 163
BspDI	ATCGAT	1 cut(s)	264
BspHI	TCATGA	1 cut(s)	571
BspMAI	CTGCAG	1 cut(s)	351
BspMI	ACCTGC	1 cut(s)	340
BspQI	GCTCTTC	1 cut(s)	528
BspT104I	TTCGAA	1 cut(s)	58
BspTNI	GGTCTC	1 cut(s)	312
BsrDI	GCAATG	1 cut(s)	231
BssECI	CCNNGG	2 cut(s)	468, 788
BssMI	GATC	4 cut(s)	52, 97, 574, 705
Bst4CI	ACNGT	4 cut(s)	133, 504, 702, 781
Bst6I	CTCTTC	3 cut(s)	23, 474, 528
BstBI	TTCGAA	1 cut(s)	58
BstC8I	GCNNGC	2 cut(s)	636, 640
BstDEI	CTNAG	3 cut(s)	75, 171, 820
BstF5I	GGATG	1 cut(s)	342
BstKTI	GATC	4 cut(s)	55, 100, 577, 708
BstMAI	GTCTC	2 cut(s)	20, 312
BstMBI	GATC	4 cut(s)	52, 97, 574, 705
BstMWI	GCNNNNNNNGC	4 cut(s)	80, 406, 556, 850
BstNSI	RCATGY	2 cut(s)	646, 754
BstSFI	CTRYAG	2 cut(s)	347, 554
BstV1I	GCAGC	3 cut(s)	162, 418, 675
Bsu15I	ATCGAT	1 cut(s)	264
BsuTUI	ATCGAT	1 cut(s)	264
BtsCI	GGATG	1 cut(s)	342
BveI	ACCTGC	1 cut(s)	340
Cac8I	GCNNGC	2 cut(s)	636, 640
CciI	TCATGA	1 cut(s)	571
ClaI	ATCGAT	1 cut(s)	264
CviAII	CATG	4 cut(s)	572, 643, 751, 854
DdeI	CTNAG	3 cut(s)	75, 171, 820
DpnI	GATC	4 cut(s)	54, 99, 576, 707
DpnII	GATC	4 cut(s)	52, 97, 574, 705
DriI	GACNNNNNGTC	1 cut(s)	325
Eam1104I	CTCTTC	3 cut(s)	23, 474, 528
Eam1105I	GACNNNNNGTC	1 cut(s)	325
EarI	CTCTTC	3 cut(s)	23, 474, 528
Ecl136II	GAGCTC	1 cut(s)	442
Eco24I	GRGCYC	2 cut(s)	387, 444
Eco31I	GGTCTC	1 cut(s)	312
Eco53kI	GAGCTC	1 cut(s)	442
Eco57I	CTGAAG	1 cut(s)	527
EcoICRI	GAGCTC	1 cut(s)	442
EcoRI	GAATTC	1 cut(s)	43
EcoT38I	GRGCYC	2 cut(s)	387, 444
FaeI	CATG	4 cut(s)	575, 646, 754, 857
FalI	AAGNNNNNCTT	4 cut(s)	522, 554, 525, 557
FaqI	GGGAC	1 cut(s)	267
FatI	CATG	4 cut(s)	571, 642, 750, 853
FbaI	TGATCA	2 cut(s)	574, 705
Fnu4HI	GCNGC	3 cut(s)	176, 407, 689
FokI	GGATG	1 cut(s)	349
FriOI	GRGCYC	2 cut(s)	387, 444
Fsp4HI	GCNGC	3 cut(s)	176, 407, 689
FspBI	CTAG	3 cut(s)	333, 413, 476
GluI	GCNGC	3 cut(s)	176, 407, 689
Hin1II	CATG	4 cut(s)	575, 646, 754, 857
HincII	GTYRAC	1 cut(s)	507
HindII	GTYRAC	1 cut(s)	507
HindIII	AAGCTT	1 cut(s)	711
HinfI	GANTC	7 cut(s)	35, 236, 343, 617, 626, 695, 814
HpaI	GTTAAC	1 cut(s)	507
HphI	GGTGA	2 cut(s)	569, 640
Hpy166II	GTNNAC	3 cut(s)	507, 648, 756
Hpy188I	TCNGA	5 cut(s)	78, 172, 317, 469, 546
Hpy188III	TCNNGA	2 cut(s)	413, 572
Hpy8I	GTNNAC	3 cut(s)	507, 648, 756
HpyAV	CCTTC	3 cut(s)	176, 205, 209
HpyCH4III	ACNGT	4 cut(s)	133, 504, 702, 781
HpyCH4V	TGCA	6 cut(s)	4, 83, 178, 232, 349, 676
HpyF10VI	GCNNNNNNNGC	4 cut(s)	80, 406, 556, 850
HpyF3I	CTNAG	3 cut(s)	75, 171, 820
Hsp92II	CATG	4 cut(s)	575, 646, 754, 857
Ksp22I	TGATCA	2 cut(s)	574, 705
KspAI	GTTAAC	1 cut(s)	507
Kzo9I	GATC	4 cut(s)	52, 97, 574, 705
LguI	GCTCTTC	1 cut(s)	528
LmnI	GCTCC	1 cut(s)	439
LpnPI	CCDG	8 cut(s)	218, 335, 366, 472, 593, 599, 652, 834
Lsp1109I	GCAGC	3 cut(s)	162, 418, 675
MaeI	CTAG	3 cut(s)	333, 413, 476
MaeIII	GTNAC	1 cut(s)	518
MalI	GATC	4 cut(s)	54, 99, 576, 707
MboI	GATC	4 cut(s)	52, 97, 574, 705
MboII	GAAGA	7 cut(s)	10, 47, 107, 211, 491, 533, 545
MhlI	GDGCHC	2 cut(s)	387, 444
MluCI	AATT	4 cut(s)	43, 160, 205, 458
MlyI	GAGTC	2 cut(s)	44, 808
MmeI	TCCRAC	2 cut(s)	295, 585
MnlI	CCTC	2 cut(s)	463, 798
MroXI	GAANNNNTTC	1 cut(s)	537
MseI	TTAA	2 cut(s)	452, 506
MslI	CAYNNNNRTG	1 cut(s)	105
Mva1269I	GAATGC	1 cut(s)	121
MwoI	GCNNNNNNNGC	4 cut(s)	80, 406, 556, 850
NdeII	GATC	4 cut(s)	52, 97, 574, 705
NlaIII	CATG	4 cut(s)	575, 646, 754, 857
NmeAIII	GCCGAG	1 cut(s)	769
NmuCI	GTSAC	1 cut(s)	518
NspI	RCATGY	2 cut(s)	646, 754
NspV	TTCGAA	1 cut(s)	58
PagI	TCATGA	1 cut(s)	571
PciI	ACATGT	1 cut(s)	750
PciSI	GCTCTTC	1 cut(s)	528
PctI	GAATGC	1 cut(s)	121
PdmI	GAANNNNTTC	1 cut(s)	537
PfeI	GAWTC	5 cut(s)	236, 343, 617, 626, 695
PkrI	GCNGC	3 cut(s)	177, 408, 690
PleI	GAGTC	2 cut(s)	43, 808
PpsI	GAGTC	2 cut(s)	43, 808
PscI	ACATGT	1 cut(s)	750
Psp124BI	GAGCTC	1 cut(s)	444
PstI	CTGCAG	1 cut(s)	351
RseI	CAYNNNNRTG	1 cut(s)	105
SacI	GAGCTC	1 cut(s)	444
SapI	GCTCTTC	1 cut(s)	528
SaqAI	TTAA	2 cut(s)	452, 506
SatI	GCNGC	3 cut(s)	176, 407, 689
Sau3AI	GATC	4 cut(s)	52, 97, 574, 705
SchI	GAGTC	2 cut(s)	44, 808
SduI	GDGCHC	2 cut(s)	387, 444
SfcI	CTRYAG	2 cut(s)	347, 554
SfuI	TTCGAA	1 cut(s)	58
SmiMI	CAYNNNNRTG	1 cut(s)	105
SmlI	CTYRAG	1 cut(s)	434
SmoI	CTYRAG	1 cut(s)	434
Sse9I	AATT	4 cut(s)	43, 160, 205, 458
SsiI	CCGC	2 cut(s)	126, 651
SspI	AATATT	1 cut(s)	30
SspMI	CTAG	3 cut(s)	333, 413, 476
SstI	GAGCTC	1 cut(s)	444
TaaI	ACNGT	4 cut(s)	133, 504, 702, 781
TaqI	TCGA	4 cut(s)	47, 58, 264, 444
TasI	AATT	4 cut(s)	43, 160, 205, 458
TfiI	GAWTC	5 cut(s)	236, 343, 617, 626, 695
Tru1I	TTAA	2 cut(s)	452, 506
Tru9I	TTAA	2 cut(s)	452, 506
TseFI	GTSAC	1 cut(s)	518
TseI	GCWGC	3 cut(s)	175, 406, 688
Tsp45I	GTSAC	1 cut(s)	518
TspDTI	ATGAA	4 cut(s)	212, 228, 294, 560
XapI	RAATTY	4 cut(s)	43, 160, 205, 458
XbaI	TCTAGA	1 cut(s)	412
XceI	RCATGY	2 cut(s)	646, 754
XmnI	GAANNNNTTC	1 cut(s)	537
XspI	CTAG	3 cut(s)	333, 413, 476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.