Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001722

Physical Location & Seq

Genomic Coordinates Reverse (-)

16080233 .. 16081405

Gene Structure 1173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG175700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGAAGAAAAATTTGAAGGAAGGAATGGCAATGTTGCAGGATTCATACAGCCATTTGGGACAAGAAATCGATAACTTGAAAAATGAAGCTGTTGAAGTTGAAAAAGAGATAACCAAAGTCGGAGACCAAATGTCGTCTAGGATGGAGAATCTGCAGGTCAAAGCAGATGACATTAGGAATATGGCAGGGCTCTCTTTGGACAAGCAAAAGCAGCTTCTAGATGGACAAACAACAGCTCTCAAGGAGCTCGACTTTTTAACCAAATTTCAATCTGAGGCACTAGAAGAGAGCAGGAAAACCCTACAACGGTTAACTGAATATGGTCACAGACAACAAGAAGAGCTTCTTCAGAAGCAACTACAGCTTCAAAAAGTTCATGATCACCTGATGGAAAACTCAAAGTCAATGTTGGAGGCACAGGAATCTTTTGAATCAAAGCAAGCCAGCATGTTCACCGCATTAGACAAGCTATTGGCTTTGCACAATGATATGCTGCTTGAATCACGGTTGATCAAAGCTTTCTTTATTTACTCTATATCAATCTTTGCTATCTACATGTTCACAAGCACAAAGCGAACATACACAGTTAGACCTCGGCTATATATCGGTACATACACTGTCTTACTACAAAAAATAAAACTACAGAAACATATCAAGTTCAGAAACTTATATTTACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0007275 GO:0008150 GO:0009553 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0016020 GO:0016021 GO:0022414 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0042802 GO:0044425 GO:0044459 GO:0044464 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

226

Amino Acids

26.45

Weight (kDa)

8.84

Isoelectric Point (pI)

49.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490
fragaria_vesca	FvH4_6g33230 FvH4_6g41730
malus_domestica	MD09G1119800.v1.1 MD09G1266100.v1.1 MD17G1110600.v1.1
prunus_persica	Prupe.3G163900_v2.0.a1 Prupe.3G204300_v2.0.a1 Prupe.3G204300_v2.0.a1
pyrus_communis	pycom07g05510
rosa_chinensis	RchiOBHm_Chr2g0139401 RchiOBHm_Chr2g0142951 RchiOBHm_Chr2g0157531
rosa_laevigata	RLG00000020000 RLG00000020995
rosa_multiflora	Rmu_co8048568.1_g000001 Rmu_sc0000083.1_g000018 Rmu_sc0002277.1_g000037 Rmu_sc0036081.1_g000001 Rmu_sc0036082.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092150 Rroxscaffold_2G00102200 Rroxscaffold_2G00147380
rosa_rugosa	Rorug02G0377400 Rorug02G0461800
rosa_samantha	Rh1CG268300 Rh2AG430400 Rh2AG525900 Rh2BG439400 Rh2BG540600 Rh2CG416100 Rh2CG510600 Rh2DG449400 Rh2DG549100 Rh4BG060600 Rh4CG066400 Rh5DG444200 Rh7DG175700
rosa_wichuraiana	Rw2G035150 Rw2G043560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	145
AciI	CCGC	1 cut(s)	456
AcsI	RAATTY	2 cut(s)	10, 263
AcuI	CTGAAG	1 cut(s)	332
AfaI	GTAC	1 cut(s)	610
AfiI	CCNNNNNNNGG	1 cut(s)	306
AflIII	ACRYGT	1 cut(s)	555
AgsI	TTSAA	8 cut(s)	16, 79, 95, 101, 269, 368, 431, 500
AhdI	GACNNNNNGTC	1 cut(s)	130
AluBI	AGCT	8 cut(s)	89, 214, 236, 247, 343, 364, 469, 518
AluI	AGCT	8 cut(s)	89, 214, 236, 247, 343, 364, 469, 518
Alw21I	GWGCWC	1 cut(s)	249
Alw26I	GTCTC	1 cut(s)	117
ApeKI	GCWGC	2 cut(s)	211, 493
ApoI	RAATTY	2 cut(s)	10, 263
Asp700I	GAANNNNTTC	1 cut(s)	342
AsuHPI	GGTGA	2 cut(s)	374, 445
BanII	GRGCYC	2 cut(s)	192, 249
Bbv12I	GWGCWC	1 cut(s)	249
BbvI	GCAGC	2 cut(s)	223, 480
BccI	CCATC	3 cut(s)	136, 215, 382
BclI	TGATCA	2 cut(s)	379, 510
BcoDI	GTCTC	1 cut(s)	117
BfaI	CTAG	3 cut(s)	138, 218, 281
BfmI	CTRYAG	3 cut(s)	152, 359, 641
BfuAI	ACCTGC	1 cut(s)	145
BisI	GCNGC	2 cut(s)	212, 494
BlsI	GCNGC	2 cut(s)	213, 495
BmeRI	GACNNNNNGTC	1 cut(s)	130
BpuEI	CTTGAG	1 cut(s)	224
Bsa29I	ATCGAT	1 cut(s)	69
BsaI	GGTCTC	1 cut(s)	117
BsaJI	CCNNGG	1 cut(s)	593
Bsc4I	CCNNNNNNNGG	1 cut(s)	306
Bse3DI	GCAATG	1 cut(s)	36
BseCI	ATCGAT	1 cut(s)	69
BseDI	CCNNGG	1 cut(s)	593
BseGI	GGATG	1 cut(s)	147
BseLI	CCNNNNNNNGG	1 cut(s)	306
BseMI	GCAATG	1 cut(s)	36
BseMII	CTCAG	1 cut(s)	264
BseXI	GCAGC	2 cut(s)	223, 480
BshVI	ATCGAT	1 cut(s)	69
BsiHKAI	GWGCWC	1 cut(s)	249
BslFI	GGGAC	1 cut(s)	72
BslI	CCNNNNNNNGG	1 cut(s)	306
BsmAI	GTCTC	1 cut(s)	117
BsmFI	GGGAC	1 cut(s)	72
Bso31I	GGTCTC	1 cut(s)	117
Bsp1286I	GDGCHC	2 cut(s)	192, 249
Bsp143I	GATC	2 cut(s)	379, 510
BspACI	CCGC	1 cut(s)	456
BspCNI	CTCAG	1 cut(s)	265
BspDI	ATCGAT	1 cut(s)	69
BspHI	TCATGA	1 cut(s)	376
BspMAI	CTGCAG	1 cut(s)	156
BspMI	ACCTGC	1 cut(s)	145
BspQI	GCTCTTC	1 cut(s)	333
BspTNI	GGTCTC	1 cut(s)	117
BsrDI	GCAATG	1 cut(s)	36
BssECI	CCNNGG	1 cut(s)	593
BssMI	GATC	2 cut(s)	379, 510
Bst4CI	ACNGT	4 cut(s)	309, 507, 586, 619
Bst6I	CTCTTC	2 cut(s)	279, 333
BstC8I	GCNNGC	2 cut(s)	441, 445
BstDEI	CTNAG	1 cut(s)	273
BstF5I	GGATG	1 cut(s)	147
BstKTI	GATC	2 cut(s)	382, 513
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	2 cut(s)	379, 510
BstMWI	GCNNNNNNNGC	2 cut(s)	211, 361
BstNSI	RCATGY	2 cut(s)	451, 559
BstSFI	CTRYAG	3 cut(s)	152, 359, 641
BstV1I	GCAGC	2 cut(s)	223, 480
Bsu15I	ATCGAT	1 cut(s)	69
BsuTUI	ATCGAT	1 cut(s)	69
BtsCI	GGATG	1 cut(s)	147
BtsIMutI	CAGTG	1 cut(s)	615
BveI	ACCTGC	1 cut(s)	145
Cac8I	GCNNGC	2 cut(s)	441, 445
CciI	TCATGA	1 cut(s)	376
ClaI	ATCGAT	1 cut(s)	69
Csp6I	GTAC	1 cut(s)	609
CviAII	CATG	3 cut(s)	377, 448, 556
CviQI	GTAC	1 cut(s)	609
DdeI	CTNAG	1 cut(s)	273
DpnI	GATC	2 cut(s)	381, 512
DpnII	GATC	2 cut(s)	379, 510
DriI	GACNNNNNGTC	1 cut(s)	130
Eam1104I	CTCTTC	2 cut(s)	279, 333
Eam1105I	GACNNNNNGTC	1 cut(s)	130
EarI	CTCTTC	2 cut(s)	279, 333
Ecl136II	GAGCTC	1 cut(s)	247
Eco24I	GRGCYC	2 cut(s)	192, 249
Eco31I	GGTCTC	1 cut(s)	117
Eco53kI	GAGCTC	1 cut(s)	247
Eco57I	CTGAAG	1 cut(s)	332
EcoICRI	GAGCTC	1 cut(s)	247
EcoT38I	GRGCYC	2 cut(s)	192, 249
FaeI	CATG	3 cut(s)	380, 451, 559
FalI	AAGNNNNNCTT	4 cut(s)	327, 359, 330, 362
FaqI	GGGAC	1 cut(s)	72
FatI	CATG	3 cut(s)	376, 447, 555
FbaI	TGATCA	2 cut(s)	379, 510
Fnu4HI	GCNGC	2 cut(s)	212, 494
FokI	GGATG	1 cut(s)	154
FriOI	GRGCYC	2 cut(s)	192, 249
Fsp4HI	GCNGC	2 cut(s)	212, 494
FspBI	CTAG	3 cut(s)	138, 218, 281
GluI	GCNGC	2 cut(s)	212, 494
Hin1II	CATG	3 cut(s)	380, 451, 559
HincII	GTYRAC	1 cut(s)	312
HindII	GTYRAC	1 cut(s)	312
HindIII	AAGCTT	1 cut(s)	516
HinfI	GANTC	5 cut(s)	41, 148, 422, 431, 500
HpaI	GTTAAC	1 cut(s)	312
HphI	GGTGA	2 cut(s)	374, 445
Hpy166II	GTNNAC	3 cut(s)	312, 453, 561
Hpy188I	TCNGA	4 cut(s)	122, 274, 351, 662
Hpy188III	TCNNGA	2 cut(s)	218, 377
Hpy8I	GTNNAC	3 cut(s)	312, 453, 561
HpyAV	CCTTC	2 cut(s)	10, 14
HpyCH4III	ACNGT	4 cut(s)	309, 507, 586, 619
HpyCH4V	TGCA	3 cut(s)	37, 154, 481
HpyF10VI	GCNNNNNNNGC	2 cut(s)	211, 361
HpyF3I	CTNAG	1 cut(s)	273
Hsp92II	CATG	3 cut(s)	380, 451, 559
Ksp22I	TGATCA	2 cut(s)	379, 510
KspAI	GTTAAC	1 cut(s)	312
Kzo9I	GATC	2 cut(s)	379, 510
LguI	GCTCTTC	1 cut(s)	333
LmnI	GCTCC	1 cut(s)	244
LpnPI	CCDG	7 cut(s)	23, 140, 171, 277, 398, 404, 457
Lsp1109I	GCAGC	2 cut(s)	223, 480
MaeI	CTAG	3 cut(s)	138, 218, 281
MaeIII	GTNAC	1 cut(s)	323
MalI	GATC	2 cut(s)	381, 512
MboI	GATC	2 cut(s)	379, 510
MboII	GAAGA	4 cut(s)	16, 296, 338, 350
MhlI	GDGCHC	2 cut(s)	192, 249
MluCI	AATT	2 cut(s)	10, 263
MmeI	TCCRAC	2 cut(s)	100, 390
MnlI	CCTC	3 cut(s)	268, 406, 603
MroXI	GAANNNNTTC	1 cut(s)	342
MseI	TTAA	2 cut(s)	257, 311
MwoI	GCNNNNNNNGC	2 cut(s)	211, 361
NdeII	GATC	2 cut(s)	379, 510
NlaIII	CATG	3 cut(s)	380, 451, 559
NmeAIII	GCCGAG	1 cut(s)	574
NmuCI	GTSAC	1 cut(s)	323
NspI	RCATGY	2 cut(s)	451, 559
PagI	TCATGA	1 cut(s)	376
PciI	ACATGT	1 cut(s)	555
PciSI	GCTCTTC	1 cut(s)	333
PdmI	GAANNNNTTC	1 cut(s)	342
PfeI	GAWTC	5 cut(s)	41, 148, 422, 431, 500
PkrI	GCNGC	2 cut(s)	213, 495
PscI	ACATGT	1 cut(s)	555
Psp124BI	GAGCTC	1 cut(s)	249
PstI	CTGCAG	1 cut(s)	156
RsaI	GTAC	1 cut(s)	610
RsaNI	GTAC	1 cut(s)	609
SacI	GAGCTC	1 cut(s)	249
SapI	GCTCTTC	1 cut(s)	333
SaqAI	TTAA	2 cut(s)	257, 311
SatI	GCNGC	2 cut(s)	212, 494
Sau3AI	GATC	2 cut(s)	379, 510
SduI	GDGCHC	2 cut(s)	192, 249
SfcI	CTRYAG	3 cut(s)	152, 359, 641
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
Sse9I	AATT	2 cut(s)	10, 263
SsiI	CCGC	1 cut(s)	456
SspMI	CTAG	3 cut(s)	138, 218, 281
SstI	GAGCTC	1 cut(s)	249
TaaI	ACNGT	4 cut(s)	309, 507, 586, 619
TaqI	TCGA	2 cut(s)	69, 249
TasI	AATT	2 cut(s)	10, 263
TfiI	GAWTC	5 cut(s)	41, 148, 422, 431, 500
Tru1I	TTAA	2 cut(s)	257, 311
Tru9I	TTAA	2 cut(s)	257, 311
TscAI	CASTG	1 cut(s)	622
TseFI	GTSAC	1 cut(s)	323
TseI	GCWGC	2 cut(s)	211, 493
Tsp45I	GTSAC	1 cut(s)	323
TspDTI	ATGAA	4 cut(s)	17, 33, 99, 365
TspRI	CASTG	1 cut(s)	622
XapI	RAATTY	2 cut(s)	10, 263
XbaI	TCTAGA	1 cut(s)	217
XceI	RCATGY	2 cut(s)	451, 559
XmnI	GAANNNNTTC	1 cut(s)	342
XspI	CTAG	3 cut(s)	138, 218, 281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.