Rorug02G0461800

Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
59338540 .. 59340618
2079 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0461800.1

Sequence Viewer

Length: 411 bp
ATGTCGTCATATGAGAATGTCGTTGGTGGGAAGCTCAAGCTTAAGGGAAAGGCTCTGGATGTGAAGGCTGCTGGAATTAAGAAGAAAAAGAAACATAAGAAACATCAAGATCAAATATCTCTTGTCACAGAAAAGGAGCTCGCAGCTGGTGGAAGTACAGAAGAGTTGACCAATCCTGATGAGGAAGATATGAATGATGACAACAAATCAAGAGAGGATGGGAAGGCTGCTAGTTATGACGAGTATTTGACGCCTGCAGAGAGACGATATATAGAACAGAGAGAGCAAATTGATAATCACAGGTTGGCCAAGACTGCAAATAAATCACACCGTGACAGAATTCAAGACTTCAACCAGTATCTGGCCAACATGAGTGAGCATTATGACATTCCTAAAGTTGGTCCAGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

136

Amino Acids

15.44

Weight (kDa)

6.98

Isoelectric Point (pI)

44.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAM32A PF08555 4 - 99 3.9e-15 FAM32A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000059)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06080 AT1G06080 AT2G31360 AT2G31360
fragaria_vesca FvH4_1g04480 FvH4_1g04480 FvH4_1g04480 FvH4_1g04480 FvH4_3g00350 FvH4_3g28040 FvH4_3g28040 FvH4_3g28040 FvH4_3g28050 FvH4_5g34260 FvH4_6g42131 FvH4_6g42140 FvH4_6g42171 FvH4_6g42171 FvH4_6g42171 FvH4_6g42171 FvH4_6g42171 FvH4_6g42311 FvH4_6g42312 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640
malus_domestica MD00G1098700.v1.1 MD00G1139800.v1.1 MD00G1174400.v1.1 MD02G1133600.v1.1 MD02G1271200.v1.1 MD09G1114000.v1.1 MD09G1114100.v1.1 MD09G1114200.v1.1 MD11G1194300.v1.1 MD15G1438800.v1.1 MD17G1105800.v1.1 MD17G1105900.v1.1
prunus_persica Prupe.3G210300_v2.0.a1 Prupe.3G210300_v2.0.a1 Prupe.3G210400_v2.0.a1 Prupe.3G210500_v2.0.a1 Prupe.3G210600_v2.0.a1 Prupe.3G210600_v2.0.a1 Prupe.4G228700_v2.0.a1 Prupe.4G228800_v2.0.a1 Prupe.4G228900_v2.0.a1 Prupe.4G229000_v2.0.a1 Prupe.4G229300_v2.0.a1 Prupe.4G229500_v2.0.a1 Prupe.4G229600_v2.0.a1 Prupe.4G259100_v2.0.a1 Prupe.4G259400_v2.0.a1 Prupe.4G259500_v2.0.a1 Prupe.4G259600_v2.0.a1 Prupe.4G259600_v2.0.a1 Prupe.4G259600_v2.0.a1 Prupe.4G259800_v2.0.a1 Prupe.4G259900_v2.0.a1
pyrus_communis pycom03g12440 pycom09g03830 pycom09g03840 pycom09g03850 pycom11g16300 pycom15g38680 pycom17g09850
rosa_chinensis RchiOBHm_Chr1g0337221 RchiOBHm_Chr1g0343481 RchiOBHm_Chr1g0343491 RchiOBHm_Chr1g0343531 RchiOBHm_Chr1g0343551 RchiOBHm_Chr1g0343711 RchiOBHm_Chr1g0343721 RchiOBHm_Chr1g0343731 RchiOBHm_Chr1g0360301 RchiOBHm_Chr2g0086981 RchiOBHm_Chr2g0142871 RchiOBHm_Chr2g0156531 RchiOBHm_Chr2g0157491 RchiOBHm_Chr2g0157791 RchiOBHm_Chr2g0158051 RchiOBHm_Chr2g0158061 RchiOBHm_Chr2g0158141 RchiOBHm_Chr2g0158151 RchiOBHm_Chr2g0158221 RchiOBHm_Chr2g0158251 RchiOBHm_Chr2g0159451 RchiOBHm_Chr4g0403611 RchiOBHm_Chr4g0412621 RchiOBHm_Chr4g0424961 RchiOBHm_Chr4g0425001 RchiOBHm_Chr4g0425091 RchiOBHm_Chr5g0012311 RchiOBHm_Chr5g0022121 RchiOBHm_Chr5g0050081 RchiOBHm_Chr5g0050721 RchiOBHm_Chr5g0050731 RchiOBHm_Chr5g0050761 RchiOBHm_Chr6g0252581 RchiOBHm_Chr7g0199141 RchiOBHm_Chr7g0216811 RchiOBHm_Chr7g0234331 RchiOBHm_Chr7g0234341 RchiOBHm_Chr7g0234371 RchiOBHm_Chr7g0234431 RchiOBHm_Chr7g0234681 RchiOBHm_Chr7g0234741
rosa_laevigata RLG00000001215 RLG00000001222 RLG00000001223 RLG00000001229 RLG00000003811 RLG00000007410 RLG00000015084 RLG00000017931 RLG00000020899 RLG00000020919 RLG00000020994 RLG00000021020 RLG00000021055 RLG00000021056 RLG00000021057 RLG00000021063 RLG00000021065 RLG00000021066 RLG00000021069 RLG00000021071 RLG00000021156 RLG00000024999 RLG00000025005 RLG00000028964 RLG00000029292 RLG00000032646 RLG00000034725 RLG00000034726 RLG00000034730
rosa_multiflora Rmu_co8371849.1_g000001 Rmu_co8422897.1_g000001 Rmu_sc0000195.1_g000039 Rmu_sc0000333.1_g000003 Rmu_sc0000419.1_g000030 Rmu_sc0000419.1_g000034 Rmu_sc0002016.1_g000040 Rmu_sc0002117.1_g000018 Rmu_sc0002117.1_g000023 Rmu_sc0002160.1_g000002 Rmu_sc0002204.1_g000008 Rmu_sc0002775.1_g000001 Rmu_sc0002775.1_g000013 Rmu_sc0002801.1_g000001 Rmu_sc0002801.1_g000013 Rmu_sc0004434.1_g000003 Rmu_sc0004864.1_g000019 Rmu_sc0006966.1_g000006 Rmu_sc0007763.1_g000002 Rmu_sc0007769.1_g000006 Rmu_sc0007769.1_g000013 Rmu_sc0008904.1_g000001 Rmu_sc0013250.1_g000001 Rmu_sc0013327.1_g000004 Rmu_sc0037251.1_g000001 Rmu_ssc0000217.1_g000013 Rmu_ssc0000420.1_g000014 Rmu_ssc0000420.1_g000016
rosa_roxburghii Rroxscaffold_1G00030000 Rroxscaffold_1G00030030 Rroxscaffold_1G00030060 Rroxscaffold_2G00090560 Rroxscaffold_2G00090580 Rroxscaffold_2G00091590 Rroxscaffold_2G00091630 Rroxscaffold_2G00091670 Rroxscaffold_2G00091700 Rroxscaffold_2G00091950 Rroxscaffold_2G00092160 Rroxscaffold_2G00132010 Rroxscaffold_3G00226740 Rroxscaffold_3G00226760 Rroxscaffold_5G00356990 Rroxscaffold_5G00367150 Rroxscaffold_5G00368290 Rroxscaffold_7G00212540
rosa_rugosa Rorug01G0132700.1 Rorug01G0132800.1 Rorug01G0132900.1 Rorug01G0133000.1 Rorug01G0133100.1 Rorug01G0133200.1 Rorug01G0167200 Rorug01G0471200 Rorug02G0461800 Rorug02G0463400 Rorug02G0463500 Rorug02G0463600 Rorug02G0463700 Rorug02G0463700 Rorug02G0463700 Rorug02G0465500 Rorug02G0465800 Rorug02G0465900.1 Rorug02G0466000 Rorug02G0466100 Rorug02G0466200 Rorug02G0466300 Rorug02G0466600 Rorug02G0475900 Rorug04G0200800 Rorug04G0201000 Rorug04G0201100 Rorug04G0384700 Rorug05G0000500 Rorug05G0257600 Rorug05G0257600 Rorug05G0263300 Rorug05G0263700 Rorug05G0537100 Rorug05G0579200 Rorug05G0579200 Rorug07G0155500 Rorug07G0163100 Rorug07G0283400 Rorug07G0284800 Rorug07G0285400
rosa_samantha Rh1AG184700 Rh1BG152200 Rh1DG184100 Rh2AG024000 Rh2AG525800 Rh2AG529100 Rh2AG531600 Rh2AG531800 Rh2AG532600 Rh2AG532700 Rh2AG542500 Rh2BG024600 Rh2BG540500 Rh2BG543000 Rh2BG546000 Rh2BG546100 Rh2BG546500 Rh2BG555700 Rh2CG024700 Rh2CG510500 Rh2CG513400 Rh2CG515800 Rh2CG515900 Rh2CG516300 Rh2CG516400 Rh2CG525100 Rh2CG525900 Rh2DG549000 Rh2DG551900 Rh2DG554300 Rh2DG554500 Rh2DG555100 Rh2DG564800 Rh2DG565100 Rh4AG174400 Rh4AG258000 Rh4BG263600 Rh4CG274800 Rh4DG170100 Rh4DG259200 Rh4DG259500 Rh5AG094500 Rh5AG159500 Rh5AG330300 Rh5AG335300 Rh5AG335400 Rh5AG335800 Rh5BG090700 Rh5BG159000 Rh5BG341000 Rh5BG344600 Rh5BG344800 Rh5BG345200 Rh5CG173200 Rh5CG372600 Rh5CG372700 Rh5CG373100 Rh5DG090200 Rh5DG159000 Rh5DG353800 Rh5DG357700 Rh5DG357900 Rh5DG358300 Rh6AG053400 Rh7AG176500 Rh7AG301900 Rh7AG439800 Rh7BG294700 Rh7BG412800 Rh7CG185600 Rh7CG320600 Rh7CG460400 Rh7CG460500 Rh7CG460900 Rh7CG461300 Rh7DG179500 Rh7DG303400 Rh7DG429500 Rh7DG429600
rosa_wichuraiana Rw0G019480 Rw1G012510 Rw1G015180 Rw2G001890 Rw2G043550 Rw2G043740 Rw2G043960 Rw2G043970 Rw2G044020 Rw2G044030 Rw2G044080 Rw2G044100 Rw2G044850 Rw2G044910 Rw4G014610 Rw4G022270 Rw4G022280 Rw4G022310 Rw5G008250 Rw5G014230 Rw5G031190 Rw5G031640 Rw5G031650 Rw5G031680 Rw6G004800 Rw7G015520 Rw7G025750 Rw7G036370 Rw7G036390 Rw7G036410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 361
AcoI YGGCCR 2 cut(s) 306, 363
AcsI RAATTY 1 cut(s) 339
AcyI GRCGYC 1 cut(s) 251
AdeI CACNNNGTG 1 cut(s) 332
AfaI GTAC 1 cut(s) 157
AfiI CCNNNNNNNGG 2 cut(s) 361, 398
AflII CTTAAG 1 cut(s) 41
AgsI TTSAA 2 cut(s) 344, 352
AjnI CCWGG 1 cut(s) 403
AluBI AGCT 4 cut(s) 34, 40, 139, 146
AluI AGCT 4 cut(s) 34, 40, 139, 146
Alw21I GWGCWC 1 cut(s) 141
Alw26I GTCTC 1 cut(s) 256
AlwNI CAGNNNCTG 1 cut(s) 361
AoxI GGCC 2 cut(s) 306, 363
ApeKI GCWGC 3 cut(s) 68, 143, 227
ApoI RAATTY 1 cut(s) 339
AspS9I GGNCC 1 cut(s) 401
AvaII GGWCC 1 cut(s) 401
BalI TGGCCA 2 cut(s) 308, 365
BanII GRGCYC 1 cut(s) 141
Bbv12I GWGCWC 1 cut(s) 141
BbvI GCAGC 3 cut(s) 55, 155, 214
BccI CCATC 1 cut(s) 212
BciT130I CCWGG 1 cut(s) 405
BcoDI GTCTC 1 cut(s) 256
BfaI CTAG 1 cut(s) 231
BfmI CTRYAG 1 cut(s) 255
BfrI CTTAAG 1 cut(s) 41
BisI GCNGC 3 cut(s) 69, 144, 228
BlsI GCNGC 3 cut(s) 70, 145, 229
Bme1390I CCNGG 1 cut(s) 405
Bme18I GGWCC 1 cut(s) 401
BmgT120I GGNCC 1 cut(s) 401
BmrFI CCNGG 1 cut(s) 405
BpuEI CTTGAG 1 cut(s) 20
BsaHI GRCGYC 1 cut(s) 251
Bsc4I CCNNNNNNNGG 2 cut(s) 361, 398
Bse1I ACTGG 1 cut(s) 355
BseBI CCWGG 1 cut(s) 405
BseGI GGATG 2 cut(s) 64, 223
BseLI CCNNNNNNNGG 2 cut(s) 361, 398
BseNI ACTGG 1 cut(s) 355
BseXI GCAGC 3 cut(s) 55, 155, 214
BshFI GGCC 2 cut(s) 308, 365
BsiHKAI GWGCWC 1 cut(s) 141
BslI CCNNNNNNNGG 2 cut(s) 361, 398
BsmAI GTCTC 1 cut(s) 256
BsmBI CGTCTC 1 cut(s) 256
BsnI GGCC 2 cut(s) 308, 365
Bsp1286I GDGCHC 1 cut(s) 141
Bsp143I GATC 1 cut(s) 109
BspANI GGCC 2 cut(s) 308, 365
BspMAI CTGCAG 1 cut(s) 259
BspTI CTTAAG 1 cut(s) 41
BsrI ACTGG 1 cut(s) 355
BssMI GATC 1 cut(s) 109
BssNI GRCGYC 1 cut(s) 251
Bst2UI CCWGG 1 cut(s) 405
Bst4CI ACNGT 1 cut(s) 332
Bst6I CTCTTC 1 cut(s) 156
BstACI GRCGYC 1 cut(s) 251
BstAFI CTTAAG 1 cut(s) 41
BstC8I GCNNGC 2 cut(s) 141, 255
BstF5I GGATG 2 cut(s) 64, 223
BstKTI GATC 1 cut(s) 112
BstMAI GTCTC 1 cut(s) 256
BstMBI GATC 1 cut(s) 109
BstMWI GCNNNNNNNGC 1 cut(s) 314
BstNI CCWGG 1 cut(s) 405
BstSCI CCNGG 1 cut(s) 403
BstSFI CTRYAG 1 cut(s) 255
BstV1I GCAGC 3 cut(s) 55, 155, 214
BsuRI GGCC 2 cut(s) 308, 365
BtsCI GGATG 2 cut(s) 64, 223
Cac8I GCNNGC 2 cut(s) 141, 255
CaiI CAGNNNCTG 1 cut(s) 361
Cfr13I GGNCC 1 cut(s) 401
CseI GACGC 1 cut(s) 259
Csp6I GTAC 1 cut(s) 156
CviAII CATG 1 cut(s) 370
CviQI GTAC 1 cut(s) 156
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
DraIII CACNNNGTG 1 cut(s) 332
EaeI YGGCCR 2 cut(s) 306, 363
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
Ecl136II GAGCTC 1 cut(s) 139
Eco24I GRGCYC 1 cut(s) 141
Eco47I GGWCC 1 cut(s) 401
Eco53kI GAGCTC 1 cut(s) 139
EcoICRI GAGCTC 1 cut(s) 139
EcoRI GAATTC 1 cut(s) 339
EcoRII CCWGG 1 cut(s) 403
EcoT38I GRGCYC 1 cut(s) 141
Esp3I CGTCTC 1 cut(s) 256
FaeI CATG 1 cut(s) 373
FaiI YATR 9 cut(s) 10, 12, 96, 191, 237, 270, 272, 371, 384
FatI CATG 1 cut(s) 369
FauNDI CATATG 1 cut(s) 10
Fnu4HI GCNGC 3 cut(s) 69, 144, 228
FokI GGATG 2 cut(s) 71, 230
FriOI GRGCYC 1 cut(s) 141
Fsp4HI GCNGC 3 cut(s) 69, 144, 228
FspBI CTAG 1 cut(s) 231
GluI GCNGC 3 cut(s) 69, 144, 228
HaeIII GGCC 2 cut(s) 308, 365
HgaI GACGC 1 cut(s) 259
Hin1I GRCGYC 1 cut(s) 251
Hin1II CATG 1 cut(s) 373
HincII GTYRAC 1 cut(s) 168
HindII GTYRAC 1 cut(s) 168
HindIII AAGCTT 1 cut(s) 38
Hpy166II GTNNAC 1 cut(s) 168
Hpy188III TCNNGA 5 cut(s) 56, 107, 176, 210, 344
Hpy8I GTNNAC 1 cut(s) 168
HpyAV CCTTC 2 cut(s) 58, 217
HpyCH4III ACNGT 1 cut(s) 332
HpyCH4V TGCA 2 cut(s) 257, 317
HpyF10VI GCNNNNNNNGC 1 cut(s) 314
Hsp92I GRCGYC 1 cut(s) 251
Hsp92II CATG 1 cut(s) 373
Kzo9I GATC 1 cut(s) 109
LmnI GCTCC 1 cut(s) 136
LpnPI CCDG 9 cut(s) 41, 57, 132, 189, 267, 286, 347, 368, 390
Lsp1109I GCAGC 3 cut(s) 55, 155, 214
MaeI CTAG 1 cut(s) 231
MaeIII GTNAC 2 cut(s) 124, 332
MalI GATC 1 cut(s) 111
MboI GATC 1 cut(s) 109
MboII GAAGA 3 cut(s) 94, 173, 197
MhlI GDGCHC 1 cut(s) 141
MlsI TGGCCA 2 cut(s) 308, 365
MluCI AATT 3 cut(s) 75, 288, 339
MluNI TGGCCA 2 cut(s) 308, 365
MnlI CCTC 2 cut(s) 175, 208
Mox20I TGGCCA 2 cut(s) 308, 365
MscI TGGCCA 2 cut(s) 308, 365
MseI TTAA 2 cut(s) 42, 78
Msp20I TGGCCA 2 cut(s) 308, 365
MspA1I CMGCKG 1 cut(s) 146
MspCI CTTAAG 1 cut(s) 41
MspR9I CCNGG 1 cut(s) 405
MvaI CCWGG 1 cut(s) 405
MwoI GCNNNNNNNGC 1 cut(s) 314
NdeI CATATG 1 cut(s) 10
NdeII GATC 1 cut(s) 109
NlaIII CATG 1 cut(s) 373
NmuCI GTSAC 2 cut(s) 124, 332
PflMI CCANNNNNTGG 1 cut(s) 361
PkrI GCNGC 3 cut(s) 70, 145, 229
Psp124BI GAGCTC 1 cut(s) 141
Psp6I CCWGG 1 cut(s) 403
PspGI CCWGG 1 cut(s) 403
PspPI GGNCC 1 cut(s) 401
PstI CTGCAG 1 cut(s) 259
PstNI CAGNNNCTG 1 cut(s) 361
PvuII CAGCTG 1 cut(s) 146
RsaI GTAC 1 cut(s) 157
RsaNI GTAC 1 cut(s) 156
SacI GAGCTC 1 cut(s) 141
SaqAI TTAA 2 cut(s) 42, 78
SatI GCNGC 3 cut(s) 69, 144, 228
Sau3AI GATC 1 cut(s) 109
Sau96I GGNCC 1 cut(s) 401
ScrFI CCNGG 1 cut(s) 405
SduI GDGCHC 1 cut(s) 141
SetI ASST 5 cut(s) 36, 42, 141, 148, 305
SfcI CTRYAG 1 cut(s) 255
SinI GGWCC 1 cut(s) 401
SmlI CTYRAG 2 cut(s) 35, 41
SmoI CTYRAG 2 cut(s) 35, 41
Sse9I AATT 3 cut(s) 75, 288, 339
SspMI CTAG 1 cut(s) 231
SstI GAGCTC 1 cut(s) 141
StyD4I CCNGG 1 cut(s) 403
TaaI ACNGT 1 cut(s) 332
TasI AATT 3 cut(s) 75, 288, 339
TatI WGTACW 1 cut(s) 155
Tru1I TTAA 2 cut(s) 42, 78
Tru9I TTAA 2 cut(s) 42, 78
TseFI GTSAC 2 cut(s) 124, 332
TseI GCWGC 3 cut(s) 68, 143, 227
Tsp45I GTSAC 2 cut(s) 124, 332
TspDTI ATGAA 1 cut(s) 206
Van91I CCANNNNNTGG 1 cut(s) 361
Vha464I CTTAAG 1 cut(s) 41
VpaK11BI GGWCC 1 cut(s) 401
XapI RAATTY 1 cut(s) 339
XspI CTAG 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.