pycom09g03830

Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Reverse (-)
2857329 .. 2858788
1460 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g03830.2

Sequence Viewer

Length: 795 bp
ATGGGAGAGTGGGTGACGCAGTGGAGGGTAGAATTTTTGGGGAGGGAATGGAATGTGGTGGACATAGGCTCAGTAGTTGTCGTTCTGGCTTTGCATTTGCTTACTCTTTTAGCTCCCTTTCATTTCAACTGGCCTGCATTTTGGGTAGCAGTTGCGCTCTATCTTGTCATAGGAGTAAGTGTGAATCTCTCTTACCACAGGCAACTTTCCCAACGGAGTTTCAAGCTTCCCAAATGGCTTGAATACTTTTTTGCTTACTGTGGAGTCCTCTCGTTTCAGTATGAAGCACGACTAAAGAATGTTGGAGACTTGAAAAGGCAGCCATTCTATAGATTTCTTCATTATACGTACCCCCTTCATGCAATTGGTTTTGGAGTTCTCCTCTACGCTTTGGGAGGATCACCCTTTCTGGTTTGGGGACTGGATGTGAGGTCAATAATTTTTCTCCACGCTACTTTCGAAATAAATTCAATTTGCCACACTTGGGGGCAACAAGTATGGGATACTGATGATTTGTCTCGAAACAACTGGTTAATTGGATTGCTGGCGCATGGAGAAGGTTGGCATAACAATCACCATGCATTTGAACACTCAGCTCGGCACGGCCTAGAGTGGTGGCAAATTGATATTACTTGGTACGTAATAAGATTTCTTGAAGCTGTTGGATTAGCAACGGACGTAAAGCTTCCTACTGAGACTCAGAAGAATCGAAGAGCTTTAATGTTAACCAGCAACAACCACCAAATCAGCAACGAAAAACAACTCGACGCAAAAGTCAACAATGGAAAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

265

Amino Acids

30.76

Weight (kDa)

7.89

Isoelectric Point (pI)

26.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000059)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06080 AT1G06080 AT2G31360 AT2G31360
fragaria_vesca FvH4_1g04480 FvH4_1g04480 FvH4_1g04480 FvH4_1g04480 FvH4_3g00350 FvH4_3g28040 FvH4_3g28040 FvH4_3g28040 FvH4_3g28050 FvH4_5g34260 FvH4_6g42131 FvH4_6g42140 FvH4_6g42171 FvH4_6g42171 FvH4_6g42171 FvH4_6g42171 FvH4_6g42171 FvH4_6g42311 FvH4_6g42312 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640
malus_domestica MD00G1098700.v1.1 MD00G1139800.v1.1 MD00G1174400.v1.1 MD02G1133600.v1.1 MD02G1271200.v1.1 MD09G1114000.v1.1 MD09G1114100.v1.1 MD09G1114200.v1.1 MD11G1194300.v1.1 MD15G1438800.v1.1 MD17G1105800.v1.1 MD17G1105900.v1.1
prunus_persica Prupe.3G210300_v2.0.a1 Prupe.3G210300_v2.0.a1 Prupe.3G210400_v2.0.a1 Prupe.3G210500_v2.0.a1 Prupe.3G210600_v2.0.a1 Prupe.3G210600_v2.0.a1 Prupe.4G228700_v2.0.a1 Prupe.4G228800_v2.0.a1 Prupe.4G228900_v2.0.a1 Prupe.4G229000_v2.0.a1 Prupe.4G229300_v2.0.a1 Prupe.4G229500_v2.0.a1 Prupe.4G229600_v2.0.a1 Prupe.4G259100_v2.0.a1 Prupe.4G259400_v2.0.a1 Prupe.4G259500_v2.0.a1 Prupe.4G259600_v2.0.a1 Prupe.4G259600_v2.0.a1 Prupe.4G259600_v2.0.a1 Prupe.4G259800_v2.0.a1 Prupe.4G259900_v2.0.a1
pyrus_communis pycom03g12440 pycom09g03830 pycom09g03840 pycom09g03850 pycom11g16300 pycom15g38680 pycom17g09850
rosa_chinensis RchiOBHm_Chr1g0337221 RchiOBHm_Chr1g0343481 RchiOBHm_Chr1g0343491 RchiOBHm_Chr1g0343531 RchiOBHm_Chr1g0343551 RchiOBHm_Chr1g0343711 RchiOBHm_Chr1g0343721 RchiOBHm_Chr1g0343731 RchiOBHm_Chr1g0360301 RchiOBHm_Chr2g0086981 RchiOBHm_Chr2g0142871 RchiOBHm_Chr2g0156531 RchiOBHm_Chr2g0157491 RchiOBHm_Chr2g0157791 RchiOBHm_Chr2g0158051 RchiOBHm_Chr2g0158061 RchiOBHm_Chr2g0158141 RchiOBHm_Chr2g0158151 RchiOBHm_Chr2g0158221 RchiOBHm_Chr2g0158251 RchiOBHm_Chr2g0159451 RchiOBHm_Chr4g0403611 RchiOBHm_Chr4g0412621 RchiOBHm_Chr4g0424961 RchiOBHm_Chr4g0425001 RchiOBHm_Chr4g0425091 RchiOBHm_Chr5g0012311 RchiOBHm_Chr5g0022121 RchiOBHm_Chr5g0050081 RchiOBHm_Chr5g0050721 RchiOBHm_Chr5g0050731 RchiOBHm_Chr5g0050761 RchiOBHm_Chr6g0252581 RchiOBHm_Chr7g0199141 RchiOBHm_Chr7g0216811 RchiOBHm_Chr7g0234331 RchiOBHm_Chr7g0234341 RchiOBHm_Chr7g0234371 RchiOBHm_Chr7g0234431 RchiOBHm_Chr7g0234681 RchiOBHm_Chr7g0234741
rosa_laevigata RLG00000001215 RLG00000001222 RLG00000001223 RLG00000001229 RLG00000003811 RLG00000007410 RLG00000015084 RLG00000017931 RLG00000020899 RLG00000020919 RLG00000020994 RLG00000021020 RLG00000021055 RLG00000021056 RLG00000021057 RLG00000021063 RLG00000021065 RLG00000021066 RLG00000021069 RLG00000021071 RLG00000021156 RLG00000024999 RLG00000025005 RLG00000028964 RLG00000029292 RLG00000032646 RLG00000034725 RLG00000034726 RLG00000034730
rosa_multiflora Rmu_co8371849.1_g000001 Rmu_co8422897.1_g000001 Rmu_sc0000195.1_g000039 Rmu_sc0000333.1_g000003 Rmu_sc0000419.1_g000030 Rmu_sc0000419.1_g000034 Rmu_sc0002016.1_g000040 Rmu_sc0002117.1_g000018 Rmu_sc0002117.1_g000023 Rmu_sc0002160.1_g000002 Rmu_sc0002204.1_g000008 Rmu_sc0002775.1_g000001 Rmu_sc0002775.1_g000013 Rmu_sc0002801.1_g000001 Rmu_sc0002801.1_g000013 Rmu_sc0004434.1_g000003 Rmu_sc0004864.1_g000019 Rmu_sc0006966.1_g000006 Rmu_sc0007763.1_g000002 Rmu_sc0007769.1_g000006 Rmu_sc0007769.1_g000013 Rmu_sc0008904.1_g000001 Rmu_sc0013250.1_g000001 Rmu_sc0013327.1_g000004 Rmu_sc0037251.1_g000001 Rmu_ssc0000217.1_g000013 Rmu_ssc0000420.1_g000014 Rmu_ssc0000420.1_g000016
rosa_roxburghii Rroxscaffold_1G00030000 Rroxscaffold_1G00030030 Rroxscaffold_1G00030060 Rroxscaffold_2G00090560 Rroxscaffold_2G00090580 Rroxscaffold_2G00091590 Rroxscaffold_2G00091630 Rroxscaffold_2G00091670 Rroxscaffold_2G00091700 Rroxscaffold_2G00091950 Rroxscaffold_2G00092160 Rroxscaffold_2G00132010 Rroxscaffold_3G00226740 Rroxscaffold_3G00226760 Rroxscaffold_5G00356990 Rroxscaffold_5G00367150 Rroxscaffold_5G00368290 Rroxscaffold_7G00212540
rosa_rugosa Rorug01G0132700.1 Rorug01G0132800.1 Rorug01G0132900.1 Rorug01G0133000.1 Rorug01G0133100.1 Rorug01G0133200.1 Rorug01G0167200 Rorug01G0471200 Rorug02G0461800 Rorug02G0463400 Rorug02G0463500 Rorug02G0463600 Rorug02G0463700 Rorug02G0463700 Rorug02G0463700 Rorug02G0465500 Rorug02G0465800 Rorug02G0465900.1 Rorug02G0466000 Rorug02G0466100 Rorug02G0466200 Rorug02G0466300 Rorug02G0466600 Rorug02G0475900 Rorug04G0200800 Rorug04G0201000 Rorug04G0201100 Rorug04G0384700 Rorug05G0000500 Rorug05G0257600 Rorug05G0257600 Rorug05G0263300 Rorug05G0263700 Rorug05G0537100 Rorug05G0579200 Rorug05G0579200 Rorug07G0155500 Rorug07G0163100 Rorug07G0283400 Rorug07G0284800 Rorug07G0285400
rosa_samantha Rh1AG184700 Rh1BG152200 Rh1DG184100 Rh2AG024000 Rh2AG525800 Rh2AG529100 Rh2AG531600 Rh2AG531800 Rh2AG532600 Rh2AG532700 Rh2AG542500 Rh2BG024600 Rh2BG540500 Rh2BG543000 Rh2BG546000 Rh2BG546100 Rh2BG546500 Rh2BG555700 Rh2CG024700 Rh2CG510500 Rh2CG513400 Rh2CG515800 Rh2CG515900 Rh2CG516300 Rh2CG516400 Rh2CG525100 Rh2CG525900 Rh2DG549000 Rh2DG551900 Rh2DG554300 Rh2DG554500 Rh2DG555100 Rh2DG564800 Rh2DG565100 Rh4AG174400 Rh4AG258000 Rh4BG263600 Rh4CG274800 Rh4DG170100 Rh4DG259200 Rh4DG259500 Rh5AG094500 Rh5AG159500 Rh5AG330300 Rh5AG335300 Rh5AG335400 Rh5AG335800 Rh5BG090700 Rh5BG159000 Rh5BG341000 Rh5BG344600 Rh5BG344800 Rh5BG345200 Rh5CG173200 Rh5CG372600 Rh5CG372700 Rh5CG373100 Rh5DG090200 Rh5DG159000 Rh5DG353800 Rh5DG357700 Rh5DG357900 Rh5DG358300 Rh6AG053400 Rh7AG176500 Rh7AG301900 Rh7AG439800 Rh7BG294700 Rh7BG412800 Rh7CG185600 Rh7CG320600 Rh7CG460400 Rh7CG460500 Rh7CG460900 Rh7CG461300 Rh7DG179500 Rh7DG303400 Rh7DG429500 Rh7DG429600
rosa_wichuraiana Rw0G019480 Rw1G012510 Rw1G015180 Rw2G001890 Rw2G043550 Rw2G043740 Rw2G043960 Rw2G043970 Rw2G044020 Rw2G044030 Rw2G044080 Rw2G044100 Rw2G044850 Rw2G044910 Rw4G014610 Rw4G022270 Rw4G022280 Rw4G022310 Rw5G008250 Rw5G014230 Rw5G031190 Rw5G031640 Rw5G031650 Rw5G031680 Rw6G004800 Rw7G015520 Rw7G025750 Rw7G036370 Rw7G036390 Rw7G036410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 773
AclWI GGATC 1 cut(s) 406
AcsI RAATTY 2 cut(s) 32, 466
AfaI GTAC 2 cut(s) 350, 638
AfiI CCNNNNNNNGG 1 cut(s) 484
AgsI TTSAA 7 cut(s) 127, 223, 242, 313, 471, 587, 656
AluBI AGCT 7 cut(s) 113, 226, 596, 659, 685, 716, 790
AluI AGCT 7 cut(s) 113, 226, 596, 659, 685, 716, 790
Alw26I GTCTC 3 cut(s) 300, 522, 689
AlwI GGATC 1 cut(s) 406
AoxI GGCC 2 cut(s) 131, 604
ApeKI GCWGC 1 cut(s) 319
ApoI RAATTY 2 cut(s) 32, 466
AspLEI GCGC 2 cut(s) 157, 550
AsuHPI GGTGA 3 cut(s) 25, 393, 566
AsuII TTCGAA 1 cut(s) 459
BbvI GCAGC 1 cut(s) 331
BceAI ACGGC 1 cut(s) 619
BciVI GTATCC 1 cut(s) 496
BcoDI GTCTC 3 cut(s) 300, 522, 689
BfaI CTAG 1 cut(s) 608
BfmI CTRYAG 1 cut(s) 328
BfuI GTATCC 1 cut(s) 496
BisI GCNGC 1 cut(s) 320
BlsI GCNGC 1 cut(s) 321
BplI GAGNNNNNCTC 2 cut(s) 366, 398
Bpu14I TTCGAA 1 cut(s) 459
BsaAI YACGTR 2 cut(s) 348, 640
BsaXI ACNNNNNCTCC 3 cut(s) 27, 165, 195
Bsc4I CCNNNNNNNGG 1 cut(s) 484
Bse1I ACTGG 3 cut(s) 134, 426, 533
BseGI GGATG 1 cut(s) 430
BseLI CCNNNNNNNGG 1 cut(s) 484
BseMII CTCAG 4 cut(s) 84, 606, 684, 713
BseNI ACTGG 3 cut(s) 134, 426, 533
BseRI GAGGAG 1 cut(s) 371
BseXI GCAGC 1 cut(s) 331
BshFI GGCC 2 cut(s) 133, 606
BslFI GGGAC 1 cut(s) 432
BslI CCNNNNNNNGG 1 cut(s) 484
BsmAI GTCTC 3 cut(s) 300, 522, 689
BsmFI GGGAC 1 cut(s) 432
BsnI GGCC 2 cut(s) 133, 606
Bsp119I TTCGAA 1 cut(s) 459
Bsp143I GATC 1 cut(s) 398
BspANI GGCC 2 cut(s) 133, 606
BspCNI CTCAG 4 cut(s) 83, 605, 685, 712
BspPI GGATC 1 cut(s) 406
BspQI GCTCTTC 1 cut(s) 706
BspT104I TTCGAA 1 cut(s) 459
BsrI ACTGG 3 cut(s) 134, 426, 533
BssMI GATC 1 cut(s) 398
Bst4CI ACNGT 1 cut(s) 260
Bst6I CTCTTC 1 cut(s) 706
BstBAI YACGTR 2 cut(s) 348, 640
BstBI TTCGAA 1 cut(s) 459
BstC8I GCNNGC 2 cut(s) 135, 546
BstDEI CTNAG 4 cut(s) 70, 592, 693, 699
BstF5I GGATG 1 cut(s) 430
BstHHI GCGC 2 cut(s) 157, 550
BstKTI GATC 1 cut(s) 401
BstMAI GTCTC 3 cut(s) 300, 522, 689
BstMBI GATC 1 cut(s) 398
BstSFI CTRYAG 1 cut(s) 328
BstSNI TACGTA 2 cut(s) 348, 640
BstV1I GCAGC 1 cut(s) 331
BsuI GTATCC 1 cut(s) 496
BsuRI GGCC 2 cut(s) 133, 606
BtsCI GGATG 1 cut(s) 430
BtsI GCAGTG 1 cut(s) 26
BtsIMutI CAGTG 1 cut(s) 26
Cac8I GCNNGC 2 cut(s) 135, 546
CfoI GCGC 2 cut(s) 157, 550
CseI GACGC 2 cut(s) 25, 776
Csp6I GTAC 2 cut(s) 349, 637
CviAII CATG 3 cut(s) 359, 551, 578
CviQI GTAC 2 cut(s) 349, 637
DdeI CTNAG 4 cut(s) 70, 592, 693, 699
DpnI GATC 1 cut(s) 400
DpnII GATC 1 cut(s) 398
DrdI GACNNNNNNGTC 1 cut(s) 773
DseDI GACNNNNNNGTC 1 cut(s) 773
Eam1104I CTCTTC 1 cut(s) 706
EarI CTCTTC 1 cut(s) 706
Eco105I TACGTA 2 cut(s) 348, 640
EcoT22I ATGCAT 1 cut(s) 583
FaeI CATG 3 cut(s) 362, 554, 581
FaqI GGGAC 1 cut(s) 432
FatI CATG 3 cut(s) 358, 550, 577
Fnu4HI GCNGC 1 cut(s) 320
FokI GGATG 1 cut(s) 437
Fsp4HI GCNGC 1 cut(s) 320
FspBI CTAG 1 cut(s) 608
GlaI GCGC 2 cut(s) 156, 549
GluI GCNGC 1 cut(s) 320
HaeIII GGCC 2 cut(s) 133, 606
HgaI GACGC 2 cut(s) 25, 776
HhaI GCGC 2 cut(s) 157, 550
Hin1II CATG 3 cut(s) 362, 554, 581
Hin6I GCGC 2 cut(s) 155, 548
HinP1I GCGC 2 cut(s) 155, 548
HincII GTYRAC 2 cut(s) 726, 778
HindII GTYRAC 2 cut(s) 726, 778
HindIII AAGCTT 3 cut(s) 224, 683, 788
HinfI GANTC 4 cut(s) 184, 264, 697, 706
HpaI GTTAAC 1 cut(s) 726
HphI GGTGA 3 cut(s) 25, 393, 566
Hpy166II GTNNAC 3 cut(s) 61, 726, 778
Hpy188I TCNGA 1 cut(s) 702
Hpy188III TCNNGA 2 cut(s) 519, 653
Hpy8I GTNNAC 3 cut(s) 61, 726, 778
Hpy99I CGWCG 1 cut(s) 770
HpyAV CCTTC 2 cut(s) 365, 551
HpyCH4III ACNGT 1 cut(s) 260
HpyCH4IV ACGT 3 cut(s) 347, 639, 678
HpyCH4V TGCA 4 cut(s) 94, 137, 362, 581
HpyF3I CTNAG 4 cut(s) 70, 592, 693, 699
HpySE526I ACGT 3 cut(s) 347, 639, 678
Hsp92II CATG 3 cut(s) 362, 554, 581
HspAI GCGC 2 cut(s) 155, 548
KspAI GTTAAC 1 cut(s) 726
Kzo9I GATC 1 cut(s) 398
LguI GCTCTTC 1 cut(s) 706
LmnI GCTCC 1 cut(s) 118
LpnPI CCDG 9 cut(s) 71, 115, 147, 184, 395, 407, 514, 530, 742
Lsp1109I GCAGC 1 cut(s) 331
MaeI CTAG 1 cut(s) 608
MaeII ACGT 3 cut(s) 347, 639, 678
MaeIII GTNAC 1 cut(s) 13
MalI GATC 1 cut(s) 400
MboI GATC 1 cut(s) 398
MboII GAAGA 3 cut(s) 329, 715, 723
MfeI CAATTG 1 cut(s) 363
MluCI AATT 7 cut(s) 32, 363, 438, 466, 471, 534, 621
MlyI GAGTC 2 cut(s) 273, 691
MmeI TCCRAC 2 cut(s) 283, 643
MnlI CCTC 6 cut(s) 18, 36, 278, 389, 392, 423
Mph1103I ATGCAT 1 cut(s) 583
MseI TTAA 3 cut(s) 533, 719, 725
MunI CAATTG 1 cut(s) 363
NdeII GATC 1 cut(s) 398
NlaIII CATG 3 cut(s) 362, 554, 581
NmeAIII GCCGAG 1 cut(s) 577
NmuCI GTSAC 1 cut(s) 13
NsiI ATGCAT 1 cut(s) 583
NspV TTCGAA 1 cut(s) 459
PciSI GCTCTTC 1 cut(s) 706
PcsI WCGNNNNNNNCGW 1 cut(s) 456
PfeI GAWTC 2 cut(s) 184, 706
PkrI GCNGC 1 cut(s) 321
PleI GAGTC 2 cut(s) 272, 691
PpsI GAGTC 2 cut(s) 272, 691
Ppu21I YACGTR 2 cut(s) 348, 640
PsrI GAACNNNNNNTAC 2 cut(s) 66, 98
RsaI GTAC 2 cut(s) 350, 638
RsaNI GTAC 2 cut(s) 349, 637
SapI GCTCTTC 1 cut(s) 706
SaqAI TTAA 3 cut(s) 533, 719, 725
SatI GCNGC 1 cut(s) 320
Sau3AI GATC 1 cut(s) 398
SchI GAGTC 2 cut(s) 273, 691
SfcI CTRYAG 1 cut(s) 328
SfuI TTCGAA 1 cut(s) 459
SnaBI TACGTA 2 cut(s) 348, 640
Sse9I AATT 7 cut(s) 32, 363, 438, 466, 471, 534, 621
SspMI CTAG 1 cut(s) 608
TaaI ACNGT 1 cut(s) 260
TaiI ACGT 3 cut(s) 350, 642, 681
TaqI TCGA 4 cut(s) 459, 520, 709, 765
TasI AATT 7 cut(s) 32, 363, 438, 466, 471, 534, 621
TfiI GAWTC 2 cut(s) 184, 706
Tru1I TTAA 3 cut(s) 533, 719, 725
Tru9I TTAA 3 cut(s) 533, 719, 725
TscAI CASTG 1 cut(s) 26
TseFI GTSAC 1 cut(s) 13
TseI GCWGC 1 cut(s) 319
Tsp45I GTSAC 1 cut(s) 13
TspDTI ATGAA 4 cut(s) 110, 297, 329, 347
TspGWI ACGGA 2 cut(s) 229, 689
TspRI CASTG 1 cut(s) 26
XapI RAATTY 2 cut(s) 32, 466
XspI CTAG 1 cut(s) 608
Zsp2I ATGCAT 1 cut(s) 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.