FvH4_6g42171

Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
32972201 .. 32979888
7688 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g42171.t2

Sequence Viewer

Length: 792 bp
ATGGAACTTCGTGGACATGGTGTAGCCGTAACCCTTTCGTTTCATAGGAATCTCTCCCACAGAAGCTTCAAGCTTCCCAGATGGCTTGAGTACTTCTTTGCCTATTGTGGGGTTCTATCACTTCAGAGAAGTCCACTTGATTGGGTGAGCGTACACAGATCCCACCATCAGTTTACAGACACAGTGAAAGACCCTCATAGTCCAGTTAGAGGATTCTGGTTTAGTCATATTGGTTGGACACTCGATTACCATGGTCGAAATGGAAATTATGGACCACGACTAAGTAATGTTGGAGATTTGAAAAGACAACCATACTACATATTTCTTCATTACACATACCCTCTTCATAATACTGGTCTCGGAGTTCTATTGTATTTTATCGGAGGAATGCCGTTTTTGGTTTGGGGAATGGGAGTGAGGACGGTACTCTTTCTCCATGCAACATTTGGAATAAATTCAATTTGCCATACATGGGGACAACAAGTATGGGAAACTGGTGATTTATCTAGAAACAATTGGTTGATTGGATTGCTGGCACACGGAGAAGGTTGGCATAACAATCACCATGCTTTCCAGCACTCAGCCCGCCACGGCTTGGAATGGTGGCAAATTGATGTTACTTGGTATGTCATTAGATTTCTTGAACTTGTGGGTTTGGCAACAGATGTGAAGCTTCCAACTGAGACTCAGAAGAAACAAAGAGCTTTAAGCAACAAGATGATCCACCAGGGAAAGCAGCAGCAGCAGCTTGAAACAAATGAAGTTCCAAAATGGCAAGCTTTGAAAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

264

Amino Acids

30.74

Weight (kDa)

9.46

Isoelectric Point (pI)

36.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FA_desaturase PF00487 42 - 255 1.8e-16 Fatty acid desaturase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000059)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06080 AT1G06080 AT2G31360 AT2G31360
fragaria_vesca FvH4_1g04480 FvH4_1g04480 FvH4_1g04480 FvH4_1g04480 FvH4_3g00350 FvH4_3g28040 FvH4_3g28040 FvH4_3g28040 FvH4_3g28050 FvH4_5g34260 FvH4_6g42131 FvH4_6g42140 FvH4_6g42171 FvH4_6g42171 FvH4_6g42171 FvH4_6g42171 FvH4_6g42171 FvH4_6g42311 FvH4_6g42312 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640
malus_domestica MD00G1098700.v1.1 MD00G1139800.v1.1 MD00G1174400.v1.1 MD02G1133600.v1.1 MD02G1271200.v1.1 MD09G1114000.v1.1 MD09G1114100.v1.1 MD09G1114200.v1.1 MD11G1194300.v1.1 MD15G1438800.v1.1 MD17G1105800.v1.1 MD17G1105900.v1.1
prunus_persica Prupe.3G210300_v2.0.a1 Prupe.3G210300_v2.0.a1 Prupe.3G210400_v2.0.a1 Prupe.3G210500_v2.0.a1 Prupe.3G210600_v2.0.a1 Prupe.3G210600_v2.0.a1 Prupe.4G228700_v2.0.a1 Prupe.4G228800_v2.0.a1 Prupe.4G228900_v2.0.a1 Prupe.4G229000_v2.0.a1 Prupe.4G229300_v2.0.a1 Prupe.4G229500_v2.0.a1 Prupe.4G229600_v2.0.a1 Prupe.4G259100_v2.0.a1 Prupe.4G259400_v2.0.a1 Prupe.4G259500_v2.0.a1 Prupe.4G259600_v2.0.a1 Prupe.4G259600_v2.0.a1 Prupe.4G259600_v2.0.a1 Prupe.4G259800_v2.0.a1 Prupe.4G259900_v2.0.a1
pyrus_communis pycom03g12440 pycom09g03830 pycom09g03840 pycom09g03850 pycom11g16300 pycom15g38680 pycom17g09850
rosa_chinensis RchiOBHm_Chr1g0337221 RchiOBHm_Chr1g0343481 RchiOBHm_Chr1g0343491 RchiOBHm_Chr1g0343531 RchiOBHm_Chr1g0343551 RchiOBHm_Chr1g0343711 RchiOBHm_Chr1g0343721 RchiOBHm_Chr1g0343731 RchiOBHm_Chr1g0360301 RchiOBHm_Chr2g0086981 RchiOBHm_Chr2g0142871 RchiOBHm_Chr2g0156531 RchiOBHm_Chr2g0157491 RchiOBHm_Chr2g0157791 RchiOBHm_Chr2g0158051 RchiOBHm_Chr2g0158061 RchiOBHm_Chr2g0158141 RchiOBHm_Chr2g0158151 RchiOBHm_Chr2g0158221 RchiOBHm_Chr2g0158251 RchiOBHm_Chr2g0159451 RchiOBHm_Chr4g0403611 RchiOBHm_Chr4g0412621 RchiOBHm_Chr4g0424961 RchiOBHm_Chr4g0425001 RchiOBHm_Chr4g0425091 RchiOBHm_Chr5g0012311 RchiOBHm_Chr5g0022121 RchiOBHm_Chr5g0050081 RchiOBHm_Chr5g0050721 RchiOBHm_Chr5g0050731 RchiOBHm_Chr5g0050761 RchiOBHm_Chr6g0252581 RchiOBHm_Chr7g0199141 RchiOBHm_Chr7g0216811 RchiOBHm_Chr7g0234331 RchiOBHm_Chr7g0234341 RchiOBHm_Chr7g0234371 RchiOBHm_Chr7g0234431 RchiOBHm_Chr7g0234681 RchiOBHm_Chr7g0234741
rosa_laevigata RLG00000001215 RLG00000001222 RLG00000001223 RLG00000001229 RLG00000003811 RLG00000007410 RLG00000015084 RLG00000017931 RLG00000020899 RLG00000020919 RLG00000020994 RLG00000021020 RLG00000021055 RLG00000021056 RLG00000021057 RLG00000021063 RLG00000021065 RLG00000021066 RLG00000021069 RLG00000021071 RLG00000021156 RLG00000024999 RLG00000025005 RLG00000028964 RLG00000029292 RLG00000032646 RLG00000034725 RLG00000034726 RLG00000034730
rosa_multiflora Rmu_co8371849.1_g000001 Rmu_co8422897.1_g000001 Rmu_sc0000195.1_g000039 Rmu_sc0000333.1_g000003 Rmu_sc0000419.1_g000030 Rmu_sc0000419.1_g000034 Rmu_sc0002016.1_g000040 Rmu_sc0002117.1_g000018 Rmu_sc0002117.1_g000023 Rmu_sc0002160.1_g000002 Rmu_sc0002204.1_g000008 Rmu_sc0002775.1_g000001 Rmu_sc0002775.1_g000013 Rmu_sc0002801.1_g000001 Rmu_sc0002801.1_g000013 Rmu_sc0004434.1_g000003 Rmu_sc0004864.1_g000019 Rmu_sc0006966.1_g000006 Rmu_sc0007763.1_g000002 Rmu_sc0007769.1_g000006 Rmu_sc0007769.1_g000013 Rmu_sc0008904.1_g000001 Rmu_sc0013250.1_g000001 Rmu_sc0013327.1_g000004 Rmu_sc0037251.1_g000001 Rmu_ssc0000217.1_g000013 Rmu_ssc0000420.1_g000014 Rmu_ssc0000420.1_g000016
rosa_roxburghii Rroxscaffold_1G00030000 Rroxscaffold_1G00030030 Rroxscaffold_1G00030060 Rroxscaffold_2G00090560 Rroxscaffold_2G00090580 Rroxscaffold_2G00091590 Rroxscaffold_2G00091630 Rroxscaffold_2G00091670 Rroxscaffold_2G00091700 Rroxscaffold_2G00091950 Rroxscaffold_2G00092160 Rroxscaffold_2G00132010 Rroxscaffold_3G00226740 Rroxscaffold_3G00226760 Rroxscaffold_5G00356990 Rroxscaffold_5G00367150 Rroxscaffold_5G00368290 Rroxscaffold_7G00212540
rosa_rugosa Rorug01G0132700.1 Rorug01G0132800.1 Rorug01G0132900.1 Rorug01G0133000.1 Rorug01G0133100.1 Rorug01G0133200.1 Rorug01G0167200 Rorug01G0471200 Rorug02G0461800 Rorug02G0463400 Rorug02G0463500 Rorug02G0463600 Rorug02G0463700 Rorug02G0463700 Rorug02G0463700 Rorug02G0465500 Rorug02G0465800 Rorug02G0465900.1 Rorug02G0466000 Rorug02G0466100 Rorug02G0466200 Rorug02G0466300 Rorug02G0466600 Rorug02G0475900 Rorug04G0200800 Rorug04G0201000 Rorug04G0201100 Rorug04G0384700 Rorug05G0000500 Rorug05G0257600 Rorug05G0257600 Rorug05G0263300 Rorug05G0263700 Rorug05G0537100 Rorug05G0579200 Rorug05G0579200 Rorug07G0155500 Rorug07G0163100 Rorug07G0283400 Rorug07G0284800 Rorug07G0285400
rosa_samantha Rh1AG184700 Rh1BG152200 Rh1DG184100 Rh2AG024000 Rh2AG525800 Rh2AG529100 Rh2AG531600 Rh2AG531800 Rh2AG532600 Rh2AG532700 Rh2AG542500 Rh2BG024600 Rh2BG540500 Rh2BG543000 Rh2BG546000 Rh2BG546100 Rh2BG546500 Rh2BG555700 Rh2CG024700 Rh2CG510500 Rh2CG513400 Rh2CG515800 Rh2CG515900 Rh2CG516300 Rh2CG516400 Rh2CG525100 Rh2CG525900 Rh2DG549000 Rh2DG551900 Rh2DG554300 Rh2DG554500 Rh2DG555100 Rh2DG564800 Rh2DG565100 Rh4AG174400 Rh4AG258000 Rh4BG263600 Rh4CG274800 Rh4DG170100 Rh4DG259200 Rh4DG259500 Rh5AG094500 Rh5AG159500 Rh5AG330300 Rh5AG335300 Rh5AG335400 Rh5AG335800 Rh5BG090700 Rh5BG159000 Rh5BG341000 Rh5BG344600 Rh5BG344800 Rh5BG345200 Rh5CG173200 Rh5CG372600 Rh5CG372700 Rh5CG373100 Rh5DG090200 Rh5DG159000 Rh5DG353800 Rh5DG357700 Rh5DG357900 Rh5DG358300 Rh6AG053400 Rh7AG176500 Rh7AG301900 Rh7AG439800 Rh7BG294700 Rh7BG412800 Rh7CG185600 Rh7CG320600 Rh7CG460400 Rh7CG460500 Rh7CG460900 Rh7CG461300 Rh7DG179500 Rh7DG303400 Rh7DG429500 Rh7DG429600
rosa_wichuraiana Rw0G019480 Rw1G012510 Rw1G015180 Rw2G001890 Rw2G043550 Rw2G043740 Rw2G043960 Rw2G043970 Rw2G044020 Rw2G044030 Rw2G044080 Rw2G044100 Rw2G044850 Rw2G044910 Rw4G014610 Rw4G022270 Rw4G022280 Rw4G022310 Rw5G008250 Rw5G014230 Rw5G031190 Rw5G031640 Rw5G031650 Rw5G031680 Rw6G004800 Rw7G015520 Rw7G025750 Rw7G036370 Rw7G036390 Rw7G036410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 595
AciI CCGC 1 cut(s) 586
AclWI GGATC 2 cut(s) 153, 715
AcsI RAATTY 1 cut(s) 454
AcuI CTGAAG 1 cut(s) 107
AfaI GTAC 3 cut(s) 92, 153, 426
AfiI CCNNNNNNNGG 4 cut(s) 108, 209, 472, 595
AgsI TTSAA 6 cut(s) 70, 301, 459, 644, 752, 784
AjnI CCWGG 1 cut(s) 726
AluBI AGCT 6 cut(s) 66, 73, 673, 704, 748, 779
AluI AGCT 6 cut(s) 66, 73, 673, 704, 748, 779
Alw26I GTCTC 2 cut(s) 362, 677
AlwI GGATC 2 cut(s) 153, 715
ApeKI GCWGC 4 cut(s) 736, 739, 742, 745
ApoI RAATTY 1 cut(s) 454
Asp700I GAANNNNTTC 1 cut(s) 454
AspS9I GGNCC 1 cut(s) 272
AsuHPI GGTGA 3 cut(s) 157, 509, 554
AvaII GGWCC 1 cut(s) 272
BbvI GCAGC 4 cut(s) 748, 751, 754, 757
BccI CCATC 2 cut(s) 75, 174
BceAI ACGGC 3 cut(s) 11, 376, 607
BciT130I CCWGG 1 cut(s) 728
BcoDI GTCTC 2 cut(s) 362, 677
BfaI CTAG 1 cut(s) 507
BisI GCNGC 4 cut(s) 737, 740, 743, 746
BlsI GCNGC 4 cut(s) 738, 741, 744, 747
BmcAI AGTACT 1 cut(s) 92
Bme1390I CCNGG 1 cut(s) 728
Bme18I GGWCC 1 cut(s) 272
BmgT120I GGNCC 1 cut(s) 272
BmrFI CCNGG 1 cut(s) 728
BpuEI CTTGAG 1 cut(s) 107
BsaI GGTCTC 1 cut(s) 362
BsaJI CCNNGG 3 cut(s) 250, 589, 727
BsaXI ACNNNNNCTCC 2 cut(s) 417, 447
Bsc4I CCNNNNNNNGG 4 cut(s) 108, 209, 472, 595
Bse1I ACTGG 3 cut(s) 203, 358, 499
BseBI CCWGG 1 cut(s) 728
BseDI CCNNGG 3 cut(s) 250, 589, 727
BseLI CCNNNNNNNGG 4 cut(s) 108, 209, 472, 595
BseMII CTCAG 3 cut(s) 594, 672, 701
BseNI ACTGG 3 cut(s) 203, 358, 499
BseXI GCAGC 4 cut(s) 748, 751, 754, 757
BslFI GGGAC 1 cut(s) 489
BslI CCNNNNNNNGG 4 cut(s) 108, 209, 472, 595
BsmAI GTCTC 2 cut(s) 362, 677
BsmFI GGGAC 1 cut(s) 489
BsmI GAATGC 1 cut(s) 393
Bso31I GGTCTC 1 cut(s) 362
Bsp143I GATC 2 cut(s) 158, 720
Bsp19I CCATGG 1 cut(s) 250
BspACI CCGC 1 cut(s) 586
BspCNI CTCAG 3 cut(s) 593, 673, 700
BspPI GGATC 2 cut(s) 153, 715
BspTNI GGTCTC 1 cut(s) 362
BsrI ACTGG 3 cut(s) 203, 358, 499
BssECI CCNNGG 3 cut(s) 250, 589, 727
BssMI GATC 2 cut(s) 158, 720
BssT1I CCWWGG 1 cut(s) 250
Bst2UI CCWGG 1 cut(s) 728
Bst4CI ACNGT 2 cut(s) 184, 424
Bst6I CTCTTC 1 cut(s) 348
BstC8I GCNNGC 3 cut(s) 534, 586, 777
BstDEI CTNAG 4 cut(s) 281, 580, 681, 687
BstDSI CCRYGG 2 cut(s) 250, 589
BstKTI GATC 2 cut(s) 161, 723
BstMAI GTCTC 2 cut(s) 362, 677
BstMBI GATC 2 cut(s) 158, 720
BstMWI GCNNNNNNNGC 2 cut(s) 742, 745
BstNI CCWGG 1 cut(s) 728
BstSCI CCNGG 1 cut(s) 726
BstV1I GCAGC 4 cut(s) 748, 751, 754, 757
BstX2I RGATCY 1 cut(s) 158
BstXI CCANNNNNNTGG 1 cut(s) 141
BstYI RGATCY 1 cut(s) 158
BtgI CCRYGG 2 cut(s) 250, 589
BtsIMutI CAGTG 1 cut(s) 189
Cac8I GCNNGC 3 cut(s) 534, 586, 777
Cfr13I GGNCC 1 cut(s) 272
Csp6I GTAC 3 cut(s) 91, 152, 425
CviAII CATG 5 cut(s) 17, 251, 437, 471, 566
CviQI GTAC 3 cut(s) 91, 152, 425
DdeI CTNAG 4 cut(s) 281, 580, 681, 687
DpnI GATC 2 cut(s) 160, 722
DpnII GATC 2 cut(s) 158, 720
Eam1104I CTCTTC 1 cut(s) 348
EarI CTCTTC 1 cut(s) 348
Eco130I CCWWGG 1 cut(s) 250
Eco31I GGTCTC 1 cut(s) 362
Eco47I GGWCC 1 cut(s) 272
Eco57I CTGAAG 1 cut(s) 107
EcoRII CCWGG 1 cut(s) 726
EcoT14I CCWWGG 1 cut(s) 250
ErhI CCWWGG 1 cut(s) 250
FaeI CATG 5 cut(s) 20, 254, 440, 474, 569
FaqI GGGAC 1 cut(s) 489
FatI CATG 5 cut(s) 16, 250, 436, 470, 565
FauI CCCGC 1 cut(s) 593
Fnu4HI GCNGC 4 cut(s) 737, 740, 743, 746
Fsp4HI GCNGC 4 cut(s) 737, 740, 743, 746
FspBI CTAG 1 cut(s) 507
GluI GCNGC 4 cut(s) 737, 740, 743, 746
Hin1II CATG 5 cut(s) 20, 254, 440, 474, 569
HindIII AAGCTT 4 cut(s) 64, 71, 671, 777
HinfI GANTC 3 cut(s) 49, 213, 685
HphI GGTGA 3 cut(s) 157, 509, 554
Hpy166II GTNNAC 4 cut(s) 14, 134, 154, 174
Hpy188I TCNGA 4 cut(s) 126, 362, 383, 690
Hpy188III TCNNGA 2 cut(s) 507, 641
Hpy8I GTNNAC 4 cut(s) 14, 134, 154, 174
HpyAV CCTTC 1 cut(s) 539
HpyCH4III ACNGT 2 cut(s) 184, 424
HpyCH4V TGCA 1 cut(s) 440
HpyF10VI GCNNNNNNNGC 2 cut(s) 742, 745
HpyF3I CTNAG 4 cut(s) 281, 580, 681, 687
Hsp92II CATG 5 cut(s) 20, 254, 440, 474, 569
Kzo9I GATC 2 cut(s) 158, 720
LpnPI CCDG 9 cut(s) 91, 202, 216, 339, 480, 518, 587, 713, 740
Lsp1109I GCAGC 4 cut(s) 748, 751, 754, 757
MaeI CTAG 1 cut(s) 507
MaeIII GTNAC 2 cut(s) 28, 616
MalI GATC 2 cut(s) 160, 722
MboI GATC 2 cut(s) 158, 720
MboII GAAGA 3 cut(s) 317, 335, 703
MfeI CAATTG 1 cut(s) 514
MflI RGATCY 1 cut(s) 158
MluCI AATT 5 cut(s) 265, 454, 459, 514, 609
MlyI GAGTC 1 cut(s) 679
MmeI TCCRAC 3 cut(s) 215, 271, 701
MnlI CCTC 5 cut(s) 203, 204, 351, 377, 411
MroXI GAANNNNTTC 1 cut(s) 454
MseI TTAA 1 cut(s) 707
MspR9I CCNGG 1 cut(s) 728
MunI CAATTG 1 cut(s) 514
Mva1269I GAATGC 1 cut(s) 393
MvaI CCWGG 1 cut(s) 728
MwoI GCNNNNNNNGC 2 cut(s) 742, 745
NcoI CCATGG 1 cut(s) 250
NdeII GATC 2 cut(s) 158, 720
NlaIII CATG 5 cut(s) 20, 254, 440, 474, 569
PctI GAATGC 1 cut(s) 393
PdmI GAANNNNTTC 1 cut(s) 454
PfeI GAWTC 2 cut(s) 49, 213
PflMI CCANNNNNTGG 1 cut(s) 595
PkrI GCNGC 4 cut(s) 738, 741, 744, 747
PleI GAGTC 1 cut(s) 679
PpsI GAGTC 1 cut(s) 679
Psp6I CCWGG 1 cut(s) 726
PspGI CCWGG 1 cut(s) 726
PspPI GGNCC 1 cut(s) 272
PsuI RGATCY 1 cut(s) 158
RsaI GTAC 3 cut(s) 92, 153, 426
RsaNI GTAC 3 cut(s) 91, 152, 425
SaqAI TTAA 1 cut(s) 707
SatI GCNGC 4 cut(s) 737, 740, 743, 746
Sau3AI GATC 2 cut(s) 158, 720
Sau96I GGNCC 1 cut(s) 272
ScaI AGTACT 1 cut(s) 92
SchI GAGTC 1 cut(s) 679
ScrFI CCNGG 1 cut(s) 728
SetI ASST 7 cut(s) 68, 75, 550, 675, 706, 750, 781
SinI GGWCC 1 cut(s) 272
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 5 cut(s) 265, 454, 459, 514, 609
SsiI CCGC 1 cut(s) 586
SspMI CTAG 1 cut(s) 507
StyD4I CCNGG 1 cut(s) 726
StyI CCWWGG 1 cut(s) 250
TaaI ACNGT 2 cut(s) 184, 424
TaqI TCGA 2 cut(s) 243, 256
TasI AATT 5 cut(s) 265, 454, 459, 514, 609
TatI WGTACW 1 cut(s) 90
TfiI GAWTC 2 cut(s) 49, 213
Tru1I TTAA 1 cut(s) 707
Tru9I TTAA 1 cut(s) 707
TscAI CASTG 1 cut(s) 189
TseI GCWGC 4 cut(s) 736, 739, 742, 745
TspDTI ATGAA 4 cut(s) 32, 317, 335, 774
TspGWI ACGGA 1 cut(s) 555
TspRI CASTG 1 cut(s) 189
Van91I CCANNNNNTGG 1 cut(s) 595
VpaK11BI GGWCC 1 cut(s) 272
XapI RAATTY 1 cut(s) 454
XbaI TCTAGA 1 cut(s) 506
XcmI CCANNNNNNNNNTGG 2 cut(s) 257, 443
XmnI GAANNNNTTC 1 cut(s) 454
XspI CTAG 1 cut(s) 507
ZrmI AGTACT 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.