RLG00000028964

Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
30762666 .. 30763889
1224 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028964

Sequence Viewer

Length: 720 bp
ATGGGTGTAACTTTCTCTTTCCATCGGAACCTTTCCCACCGGAGCTTTAAGGTTCCCAAATGGCTTGAGTACTCTCTTGCTTATTGTGCAGTTCTGTCACTTCAGGGAAGTCCACTTGAATGGGTGAGCAGTCATAGATACCACCATCAATTTACCGAAAAATCGAGAGACCCTCATAGCCCCAATAAGGGATTTTGGTTTAGTCACGTGAATTGGCTGTTCGATTATCATTCTCGGTTTGGAAGCTATGACGGACAACTGATGAAGAATGTGGGAGATTTGGAATGCCAACTATACTATAGGTTTCTTCATTATACATACTTCTTTCATTCATTTCTTCTTGGAGTTGCACTCTATGTGGCCGGAGGATTACCTTTTGTGGTTTGGGGAATGGGTGTGAGGTTGGCATTTATTTTAAACGTTACCTATTCAATAAATTCCATTTGCCACACTTGGGGAAAACAAATATGGGATACTGGTGATGCCTCTAAAAACAACTGGTTGTTTGGATTGCTGGCACTAGGAGAAGGTTGGCACAATAATCACCATGCTTTTGAGTACTCAGCTCGACAAGGCTTGGAATGGTGGCAAATTGATATCACTTGGTATGTGATTAGGTTTCTTCAAGTTGTGGGTTTGGCCACAGACGTGAAACTGCCAACCGAGATTCAGAAGAAACGAAAAGCTCTGGCAAAAAATTTGACCATGAAGGATCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

240

Amino Acids

28.05

Weight (kDa)

9.15

Isoelectric Point (pI)

32.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FA_desaturase PF00487 2 - 203 1e-16 Fatty acid desaturase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000059)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06080 AT1G06080 AT2G31360 AT2G31360
fragaria_vesca FvH4_1g04480 FvH4_1g04480 FvH4_1g04480 FvH4_1g04480 FvH4_3g00350 FvH4_3g28040 FvH4_3g28040 FvH4_3g28040 FvH4_3g28050 FvH4_5g34260 FvH4_6g42131 FvH4_6g42140 FvH4_6g42171 FvH4_6g42171 FvH4_6g42171 FvH4_6g42171 FvH4_6g42171 FvH4_6g42311 FvH4_6g42312 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640
malus_domestica MD00G1098700.v1.1 MD00G1139800.v1.1 MD00G1174400.v1.1 MD02G1133600.v1.1 MD02G1271200.v1.1 MD09G1114000.v1.1 MD09G1114100.v1.1 MD09G1114200.v1.1 MD11G1194300.v1.1 MD15G1438800.v1.1 MD17G1105800.v1.1 MD17G1105900.v1.1
prunus_persica Prupe.3G210300_v2.0.a1 Prupe.3G210300_v2.0.a1 Prupe.3G210400_v2.0.a1 Prupe.3G210500_v2.0.a1 Prupe.3G210600_v2.0.a1 Prupe.3G210600_v2.0.a1 Prupe.4G228700_v2.0.a1 Prupe.4G228800_v2.0.a1 Prupe.4G228900_v2.0.a1 Prupe.4G229000_v2.0.a1 Prupe.4G229300_v2.0.a1 Prupe.4G229500_v2.0.a1 Prupe.4G229600_v2.0.a1 Prupe.4G259100_v2.0.a1 Prupe.4G259400_v2.0.a1 Prupe.4G259500_v2.0.a1 Prupe.4G259600_v2.0.a1 Prupe.4G259600_v2.0.a1 Prupe.4G259600_v2.0.a1 Prupe.4G259800_v2.0.a1 Prupe.4G259900_v2.0.a1
pyrus_communis pycom03g12440 pycom09g03830 pycom09g03840 pycom09g03850 pycom11g16300 pycom15g38680 pycom17g09850
rosa_chinensis RchiOBHm_Chr1g0337221 RchiOBHm_Chr1g0343481 RchiOBHm_Chr1g0343491 RchiOBHm_Chr1g0343531 RchiOBHm_Chr1g0343551 RchiOBHm_Chr1g0343711 RchiOBHm_Chr1g0343721 RchiOBHm_Chr1g0343731 RchiOBHm_Chr1g0360301 RchiOBHm_Chr2g0086981 RchiOBHm_Chr2g0142871 RchiOBHm_Chr2g0156531 RchiOBHm_Chr2g0157491 RchiOBHm_Chr2g0157791 RchiOBHm_Chr2g0158051 RchiOBHm_Chr2g0158061 RchiOBHm_Chr2g0158141 RchiOBHm_Chr2g0158151 RchiOBHm_Chr2g0158221 RchiOBHm_Chr2g0158251 RchiOBHm_Chr2g0159451 RchiOBHm_Chr4g0403611 RchiOBHm_Chr4g0412621 RchiOBHm_Chr4g0424961 RchiOBHm_Chr4g0425001 RchiOBHm_Chr4g0425091 RchiOBHm_Chr5g0012311 RchiOBHm_Chr5g0022121 RchiOBHm_Chr5g0050081 RchiOBHm_Chr5g0050721 RchiOBHm_Chr5g0050731 RchiOBHm_Chr5g0050761 RchiOBHm_Chr6g0252581 RchiOBHm_Chr7g0199141 RchiOBHm_Chr7g0216811 RchiOBHm_Chr7g0234331 RchiOBHm_Chr7g0234341 RchiOBHm_Chr7g0234371 RchiOBHm_Chr7g0234431 RchiOBHm_Chr7g0234681 RchiOBHm_Chr7g0234741
rosa_laevigata RLG00000001215 RLG00000001222 RLG00000001223 RLG00000001229 RLG00000003811 RLG00000007410 RLG00000015084 RLG00000017931 RLG00000020899 RLG00000020919 RLG00000020994 RLG00000021020 RLG00000021055 RLG00000021056 RLG00000021057 RLG00000021063 RLG00000021065 RLG00000021066 RLG00000021069 RLG00000021071 RLG00000021156 RLG00000024999 RLG00000025005 RLG00000028964 RLG00000029292 RLG00000032646 RLG00000034725 RLG00000034726 RLG00000034730
rosa_multiflora Rmu_co8371849.1_g000001 Rmu_co8422897.1_g000001 Rmu_sc0000195.1_g000039 Rmu_sc0000333.1_g000003 Rmu_sc0000419.1_g000030 Rmu_sc0000419.1_g000034 Rmu_sc0002016.1_g000040 Rmu_sc0002117.1_g000018 Rmu_sc0002117.1_g000023 Rmu_sc0002160.1_g000002 Rmu_sc0002204.1_g000008 Rmu_sc0002775.1_g000001 Rmu_sc0002775.1_g000013 Rmu_sc0002801.1_g000001 Rmu_sc0002801.1_g000013 Rmu_sc0004434.1_g000003 Rmu_sc0004864.1_g000019 Rmu_sc0006966.1_g000006 Rmu_sc0007763.1_g000002 Rmu_sc0007769.1_g000006 Rmu_sc0007769.1_g000013 Rmu_sc0008904.1_g000001 Rmu_sc0013250.1_g000001 Rmu_sc0013327.1_g000004 Rmu_sc0037251.1_g000001 Rmu_ssc0000217.1_g000013 Rmu_ssc0000420.1_g000014 Rmu_ssc0000420.1_g000016
rosa_roxburghii Rroxscaffold_1G00030000 Rroxscaffold_1G00030030 Rroxscaffold_1G00030060 Rroxscaffold_2G00090560 Rroxscaffold_2G00090580 Rroxscaffold_2G00091590 Rroxscaffold_2G00091630 Rroxscaffold_2G00091670 Rroxscaffold_2G00091700 Rroxscaffold_2G00091950 Rroxscaffold_2G00092160 Rroxscaffold_2G00132010 Rroxscaffold_3G00226740 Rroxscaffold_3G00226760 Rroxscaffold_5G00356990 Rroxscaffold_5G00367150 Rroxscaffold_5G00368290 Rroxscaffold_7G00212540
rosa_rugosa Rorug01G0132700.1 Rorug01G0132800.1 Rorug01G0132900.1 Rorug01G0133000.1 Rorug01G0133100.1 Rorug01G0133200.1 Rorug01G0167200 Rorug01G0471200 Rorug02G0461800 Rorug02G0463400 Rorug02G0463500 Rorug02G0463600 Rorug02G0463700 Rorug02G0463700 Rorug02G0463700 Rorug02G0465500 Rorug02G0465800 Rorug02G0465900.1 Rorug02G0466000 Rorug02G0466100 Rorug02G0466200 Rorug02G0466300 Rorug02G0466600 Rorug02G0475900 Rorug04G0200800 Rorug04G0201000 Rorug04G0201100 Rorug04G0384700 Rorug05G0000500 Rorug05G0257600 Rorug05G0257600 Rorug05G0263300 Rorug05G0263700 Rorug05G0537100 Rorug05G0579200 Rorug05G0579200 Rorug07G0155500 Rorug07G0163100 Rorug07G0283400 Rorug07G0284800 Rorug07G0285400
rosa_samantha Rh1AG184700 Rh1BG152200 Rh1DG184100 Rh2AG024000 Rh2AG525800 Rh2AG529100 Rh2AG531600 Rh2AG531800 Rh2AG532600 Rh2AG532700 Rh2AG542500 Rh2BG024600 Rh2BG540500 Rh2BG543000 Rh2BG546000 Rh2BG546100 Rh2BG546500 Rh2BG555700 Rh2CG024700 Rh2CG510500 Rh2CG513400 Rh2CG515800 Rh2CG515900 Rh2CG516300 Rh2CG516400 Rh2CG525100 Rh2CG525900 Rh2DG549000 Rh2DG551900 Rh2DG554300 Rh2DG554500 Rh2DG555100 Rh2DG564800 Rh2DG565100 Rh4AG174400 Rh4AG258000 Rh4BG263600 Rh4CG274800 Rh4DG170100 Rh4DG259200 Rh4DG259500 Rh5AG094500 Rh5AG159500 Rh5AG330300 Rh5AG335300 Rh5AG335400 Rh5AG335800 Rh5BG090700 Rh5BG159000 Rh5BG341000 Rh5BG344600 Rh5BG344800 Rh5BG345200 Rh5CG173200 Rh5CG372600 Rh5CG372700 Rh5CG373100 Rh5DG090200 Rh5DG159000 Rh5DG353800 Rh5DG357700 Rh5DG357900 Rh5DG358300 Rh6AG053400 Rh7AG176500 Rh7AG301900 Rh7AG439800 Rh7BG294700 Rh7BG412800 Rh7CG185600 Rh7CG320600 Rh7CG460400 Rh7CG460500 Rh7CG460900 Rh7CG461300 Rh7DG179500 Rh7DG303400 Rh7DG429500 Rh7DG429600
rosa_wichuraiana Rw0G019480 Rw1G012510 Rw1G015180 Rw2G001890 Rw2G043550 Rw2G043740 Rw2G043960 Rw2G043970 Rw2G044020 Rw2G044030 Rw2G044080 Rw2G044100 Rw2G044850 Rw2G044910 Rw4G014610 Rw4G022270 Rw4G022280 Rw4G022310 Rw5G008250 Rw5G014230 Rw5G031190 Rw5G031640 Rw5G031650 Rw5G031680 Rw6G004800 Rw7G015520 Rw7G025750 Rw7G036370 Rw7G036390 Rw7G036410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 420
AcoI YGGCCR 2 cut(s) 360, 639
AcsI RAATTY 2 cut(s) 436, 697
AcuI CTGAAG 1 cut(s) 86
AcvI CACGTG 1 cut(s) 208
AfaI GTAC 2 cut(s) 71, 560
AfiI CCNNNNNNNGG 3 cut(s) 187, 188, 454
AgsI TTSAA 3 cut(s) 119, 432, 626
AjiI CACGTC 1 cut(s) 649
AleI CACNNNNGTG 1 cut(s) 647
AluBI AGCT 4 cut(s) 45, 246, 566, 686
AluI AGCT 4 cut(s) 45, 246, 566, 686
Alw26I GTCTC 1 cut(s) 162
AoxI GGCC 2 cut(s) 360, 639
ApoI RAATTY 2 cut(s) 436, 697
AsuHPI GGTGA 3 cut(s) 136, 491, 536
BalI TGGCCA 1 cut(s) 641
BbrPI CACGTG 1 cut(s) 208
BccI CCATC 2 cut(s) 30, 153
BciVI GTATCC 1 cut(s) 466
BcoDI GTCTC 1 cut(s) 162
BfaI CTAG 1 cut(s) 521
BfmI CTRYAG 1 cut(s) 298
BfuI GTATCC 1 cut(s) 466
BmcAI AGTACT 2 cut(s) 71, 560
BmgBI CACGTC 1 cut(s) 649
BmiI GGNNCC 2 cut(s) 29, 54
BmsI GCATC 1 cut(s) 472
BplI GAGNNNNNCTC 4 cut(s) 157, 189, 336, 368
BpuEI CTTGAG 1 cut(s) 86
BsaAI YACGTR 1 cut(s) 208
BsaI GGTCTC 1 cut(s) 162
BsaWI WCCGGW 1 cut(s) 39
Bsc4I CCNNNNNNNGG 3 cut(s) 187, 188, 454
Bse1I ACTGG 2 cut(s) 481, 503
BseLI CCNNNNNNNGG 3 cut(s) 187, 188, 454
BseMII CTCAG 1 cut(s) 576
BseNI ACTGG 2 cut(s) 481, 503
BsgI GTGCAG 1 cut(s) 108
BshFI GGCC 2 cut(s) 362, 641
BsiSI CCGG 2 cut(s) 40, 363
BslI CCNNNNNNNGG 3 cut(s) 187, 188, 454
BsmAI GTCTC 1 cut(s) 162
BsmI GAATGC 1 cut(s) 290
BsnI GGCC 2 cut(s) 362, 641
Bso31I GGTCTC 1 cut(s) 162
Bsp143I GATC 1 cut(s) 712
BspANI GGCC 2 cut(s) 362, 641
BspCNI CTCAG 1 cut(s) 575
BspLI GGNNCC 2 cut(s) 29, 54
BspTNI GGTCTC 1 cut(s) 162
BsrI ACTGG 2 cut(s) 481, 503
BssMI GATC 1 cut(s) 712
BstBAI YACGTR 1 cut(s) 208
BstC8I GCNNGC 1 cut(s) 516
BstDEI CTNAG 1 cut(s) 562
BstKTI GATC 1 cut(s) 715
BstMAI GTCTC 1 cut(s) 162
BstMBI GATC 1 cut(s) 712
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstSFI CTRYAG 1 cut(s) 298
BstXI CCANNNNNNTGG 1 cut(s) 120
BsuI GTATCC 1 cut(s) 466
BsuRI GGCC 2 cut(s) 362, 641
BtrI CACGTC 1 cut(s) 649
Cac8I GCNNGC 1 cut(s) 516
Csp6I GTAC 2 cut(s) 70, 559
CviAII CATG 2 cut(s) 548, 706
CviQI GTAC 2 cut(s) 70, 559
DdeI CTNAG 1 cut(s) 562
DpnI GATC 1 cut(s) 714
DpnII GATC 1 cut(s) 712
DraI TTTAAA 1 cut(s) 417
EaeI YGGCCR 2 cut(s) 360, 639
Eco31I GGTCTC 1 cut(s) 162
Eco32I GATATC 1 cut(s) 598
Eco57I CTGAAG 1 cut(s) 86
Eco72I CACGTG 1 cut(s) 208
EcoRV GATATC 1 cut(s) 598
FaeI CATG 2 cut(s) 551, 709
FatI CATG 2 cut(s) 547, 705
FspBI CTAG 1 cut(s) 521
HaeIII GGCC 2 cut(s) 362, 641
HapII CCGG 2 cut(s) 40, 363
Hin1II CATG 2 cut(s) 551, 709
HinfI GANTC 1 cut(s) 667
HpaII CCGG 2 cut(s) 40, 363
HphI GGTGA 3 cut(s) 136, 491, 536
Hpy166II GTNNAC 1 cut(s) 113
Hpy188I TCNGA 2 cut(s) 27, 672
Hpy188III TCNNGA 1 cut(s) 165
Hpy8I GTNNAC 1 cut(s) 113
HpyAV CCTTC 2 cut(s) 521, 703
HpyCH4IV ACGT 3 cut(s) 207, 420, 648
HpyCH4V TGCA 2 cut(s) 89, 350
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpyF3I CTNAG 1 cut(s) 562
HpySE526I ACGT 3 cut(s) 207, 420, 648
Hsp92II CATG 2 cut(s) 551, 709
Kzo9I GATC 1 cut(s) 712
LmnI GCTCC 1 cut(s) 42
LpnPI CCDG 7 cut(s) 53, 89, 376, 462, 484, 500, 674
LweI GCATC 1 cut(s) 472
MaeI CTAG 1 cut(s) 521
MaeII ACGT 3 cut(s) 207, 420, 648
MaeIII GTNAC 4 cut(s) 7, 96, 203, 421
MalI GATC 1 cut(s) 714
MboI GATC 1 cut(s) 712
MboII GAAGA 5 cut(s) 277, 299, 329, 614, 685
MlsI TGGCCA 1 cut(s) 641
MluCI AATT 5 cut(s) 149, 211, 436, 591, 697
MluNI TGGCCA 1 cut(s) 641
MnlI CCTC 4 cut(s) 183, 359, 393, 496
Mox20I TGGCCA 1 cut(s) 641
MscI TGGCCA 1 cut(s) 641
MseI TTAA 2 cut(s) 48, 416
MslI CAYNNNNRTG 2 cut(s) 118, 647
Msp20I TGGCCA 1 cut(s) 641
MspI CCGG 2 cut(s) 40, 363
Mva1269I GAATGC 1 cut(s) 290
MwoI GCNNNNNNNGC 1 cut(s) 86
NdeII GATC 1 cut(s) 712
NlaIII CATG 2 cut(s) 551, 709
NlaIV GGNNCC 2 cut(s) 29, 54
NmuCI GTSAC 2 cut(s) 96, 203
OliI CACNNNNGTG 1 cut(s) 647
PctI GAATGC 1 cut(s) 290
PfeI GAWTC 1 cut(s) 667
PmaCI CACGTG 1 cut(s) 208
PmlI CACGTG 1 cut(s) 208
Ppu21I YACGTR 1 cut(s) 208
Psp1406I AACGTT 1 cut(s) 420
PspCI CACGTG 1 cut(s) 208
PspN4I GGNNCC 2 cut(s) 29, 54
RsaI GTAC 2 cut(s) 71, 560
RsaNI GTAC 2 cut(s) 70, 559
RseI CAYNNNNRTG 2 cut(s) 118, 647
SaqAI TTAA 2 cut(s) 48, 416
Sau3AI GATC 1 cut(s) 712
ScaI AGTACT 2 cut(s) 71, 560
SfaNI GCATC 1 cut(s) 472
SfcI CTRYAG 1 cut(s) 298
SmiMI CAYNNNNRTG 2 cut(s) 118, 647
SmlI CTYRAG 1 cut(s) 65
SmoI CTYRAG 1 cut(s) 65
Sse9I AATT 5 cut(s) 149, 211, 436, 591, 697
SspMI CTAG 1 cut(s) 521
TaiI ACGT 3 cut(s) 210, 423, 651
TaqI TCGA 3 cut(s) 164, 222, 568
TasI AATT 5 cut(s) 149, 211, 436, 591, 697
TatI WGTACW 2 cut(s) 69, 558
TfiI GAWTC 1 cut(s) 667
Tru1I TTAA 2 cut(s) 48, 416
Tru9I TTAA 2 cut(s) 48, 416
TseFI GTSAC 2 cut(s) 96, 203
Tsp45I GTSAC 2 cut(s) 96, 203
TspDTI ATGAA 4 cut(s) 278, 299, 317, 321
TspGWI ACGGA 1 cut(s) 267
XapI RAATTY 2 cut(s) 436, 697
XspI CTAG 1 cut(s) 521
ZrmI AGTACT 2 cut(s) 71, 560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.