Rorug05G0000500

Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
54011 .. 54376
366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0000500.1

Sequence Viewer

Length: 366 bp
ATGGCAGATGTGATGGAAGGTCTTGCTATGGCGTTGACGTGCTCGGATTCAACCCTGGTTTCGTTGAGGGCGGCAGGGGCTGCCGCTTTTCAGGATGGTAATTGGTATATGGTAGGGCGGTTGTTGGCACCAAAAGCAACGTTGCCGGGATTCAAAGGCACCATATCCACCATCTGGCGTATCAGGGCTGGGCTCACTATTCAGGATGCAGGAGATCGCTTTGTCTTCCAGTTCGAGAGTGAGGTTATACGCAATCGAATTTTGCATGGGGGACCCTGGTTCTATCGAAACACCATGTTGGTGGTGGGAGAGTATGACGACCTCAGTCCGGTGGAGGAGGTGCCTTTGAACATGATGGAAACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

121

Amino Acids

13.39

Weight (kDa)

4.84

Isoelectric Point (pI)

34.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 34 - 106 9.9e-11 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000059)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06080 AT1G06080 AT2G31360 AT2G31360
fragaria_vesca FvH4_1g04480 FvH4_1g04480 FvH4_1g04480 FvH4_1g04480 FvH4_3g00350 FvH4_3g28040 FvH4_3g28040 FvH4_3g28040 FvH4_3g28050 FvH4_5g34260 FvH4_6g42131 FvH4_6g42140 FvH4_6g42171 FvH4_6g42171 FvH4_6g42171 FvH4_6g42171 FvH4_6g42171 FvH4_6g42311 FvH4_6g42312 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640
malus_domestica MD00G1098700.v1.1 MD00G1139800.v1.1 MD00G1174400.v1.1 MD02G1133600.v1.1 MD02G1271200.v1.1 MD09G1114000.v1.1 MD09G1114100.v1.1 MD09G1114200.v1.1 MD11G1194300.v1.1 MD15G1438800.v1.1 MD17G1105800.v1.1 MD17G1105900.v1.1
prunus_persica Prupe.3G210300_v2.0.a1 Prupe.3G210300_v2.0.a1 Prupe.3G210400_v2.0.a1 Prupe.3G210500_v2.0.a1 Prupe.3G210600_v2.0.a1 Prupe.3G210600_v2.0.a1 Prupe.4G228700_v2.0.a1 Prupe.4G228800_v2.0.a1 Prupe.4G228900_v2.0.a1 Prupe.4G229000_v2.0.a1 Prupe.4G229300_v2.0.a1 Prupe.4G229500_v2.0.a1 Prupe.4G229600_v2.0.a1 Prupe.4G259100_v2.0.a1 Prupe.4G259400_v2.0.a1 Prupe.4G259500_v2.0.a1 Prupe.4G259600_v2.0.a1 Prupe.4G259600_v2.0.a1 Prupe.4G259600_v2.0.a1 Prupe.4G259800_v2.0.a1 Prupe.4G259900_v2.0.a1
pyrus_communis pycom03g12440 pycom09g03830 pycom09g03840 pycom09g03850 pycom11g16300 pycom15g38680 pycom17g09850
rosa_chinensis RchiOBHm_Chr1g0337221 RchiOBHm_Chr1g0343481 RchiOBHm_Chr1g0343491 RchiOBHm_Chr1g0343531 RchiOBHm_Chr1g0343551 RchiOBHm_Chr1g0343711 RchiOBHm_Chr1g0343721 RchiOBHm_Chr1g0343731 RchiOBHm_Chr1g0360301 RchiOBHm_Chr2g0086981 RchiOBHm_Chr2g0142871 RchiOBHm_Chr2g0156531 RchiOBHm_Chr2g0157491 RchiOBHm_Chr2g0157791 RchiOBHm_Chr2g0158051 RchiOBHm_Chr2g0158061 RchiOBHm_Chr2g0158141 RchiOBHm_Chr2g0158151 RchiOBHm_Chr2g0158221 RchiOBHm_Chr2g0158251 RchiOBHm_Chr2g0159451 RchiOBHm_Chr4g0403611 RchiOBHm_Chr4g0412621 RchiOBHm_Chr4g0424961 RchiOBHm_Chr4g0425001 RchiOBHm_Chr4g0425091 RchiOBHm_Chr5g0012311 RchiOBHm_Chr5g0022121 RchiOBHm_Chr5g0050081 RchiOBHm_Chr5g0050721 RchiOBHm_Chr5g0050731 RchiOBHm_Chr5g0050761 RchiOBHm_Chr6g0252581 RchiOBHm_Chr7g0199141 RchiOBHm_Chr7g0216811 RchiOBHm_Chr7g0234331 RchiOBHm_Chr7g0234341 RchiOBHm_Chr7g0234371 RchiOBHm_Chr7g0234431 RchiOBHm_Chr7g0234681 RchiOBHm_Chr7g0234741
rosa_laevigata RLG00000001215 RLG00000001222 RLG00000001223 RLG00000001229 RLG00000003811 RLG00000007410 RLG00000015084 RLG00000017931 RLG00000020899 RLG00000020919 RLG00000020994 RLG00000021020 RLG00000021055 RLG00000021056 RLG00000021057 RLG00000021063 RLG00000021065 RLG00000021066 RLG00000021069 RLG00000021071 RLG00000021156 RLG00000024999 RLG00000025005 RLG00000028964 RLG00000029292 RLG00000032646 RLG00000034725 RLG00000034726 RLG00000034730
rosa_multiflora Rmu_co8371849.1_g000001 Rmu_co8422897.1_g000001 Rmu_sc0000195.1_g000039 Rmu_sc0000333.1_g000003 Rmu_sc0000419.1_g000030 Rmu_sc0000419.1_g000034 Rmu_sc0002016.1_g000040 Rmu_sc0002117.1_g000018 Rmu_sc0002117.1_g000023 Rmu_sc0002160.1_g000002 Rmu_sc0002204.1_g000008 Rmu_sc0002775.1_g000001 Rmu_sc0002775.1_g000013 Rmu_sc0002801.1_g000001 Rmu_sc0002801.1_g000013 Rmu_sc0004434.1_g000003 Rmu_sc0004864.1_g000019 Rmu_sc0006966.1_g000006 Rmu_sc0007763.1_g000002 Rmu_sc0007769.1_g000006 Rmu_sc0007769.1_g000013 Rmu_sc0008904.1_g000001 Rmu_sc0013250.1_g000001 Rmu_sc0013327.1_g000004 Rmu_sc0037251.1_g000001 Rmu_ssc0000217.1_g000013 Rmu_ssc0000420.1_g000014 Rmu_ssc0000420.1_g000016
rosa_roxburghii Rroxscaffold_1G00030000 Rroxscaffold_1G00030030 Rroxscaffold_1G00030060 Rroxscaffold_2G00090560 Rroxscaffold_2G00090580 Rroxscaffold_2G00091590 Rroxscaffold_2G00091630 Rroxscaffold_2G00091670 Rroxscaffold_2G00091700 Rroxscaffold_2G00091950 Rroxscaffold_2G00092160 Rroxscaffold_2G00132010 Rroxscaffold_3G00226740 Rroxscaffold_3G00226760 Rroxscaffold_5G00356990 Rroxscaffold_5G00367150 Rroxscaffold_5G00368290 Rroxscaffold_7G00212540
rosa_rugosa Rorug01G0132700.1 Rorug01G0132800.1 Rorug01G0132900.1 Rorug01G0133000.1 Rorug01G0133100.1 Rorug01G0133200.1 Rorug01G0167200 Rorug01G0471200 Rorug02G0461800 Rorug02G0463400 Rorug02G0463500 Rorug02G0463600 Rorug02G0463700 Rorug02G0463700 Rorug02G0463700 Rorug02G0465500 Rorug02G0465800 Rorug02G0465900.1 Rorug02G0466000 Rorug02G0466100 Rorug02G0466200 Rorug02G0466300 Rorug02G0466600 Rorug02G0475900 Rorug04G0200800 Rorug04G0201000 Rorug04G0201100 Rorug04G0384700 Rorug05G0000500 Rorug05G0257600 Rorug05G0257600 Rorug05G0263300 Rorug05G0263700 Rorug05G0537100 Rorug05G0579200 Rorug05G0579200 Rorug07G0155500 Rorug07G0163100 Rorug07G0283400 Rorug07G0284800 Rorug07G0285400
rosa_samantha Rh1AG184700 Rh1BG152200 Rh1DG184100 Rh2AG024000 Rh2AG525800 Rh2AG529100 Rh2AG531600 Rh2AG531800 Rh2AG532600 Rh2AG532700 Rh2AG542500 Rh2BG024600 Rh2BG540500 Rh2BG543000 Rh2BG546000 Rh2BG546100 Rh2BG546500 Rh2BG555700 Rh2CG024700 Rh2CG510500 Rh2CG513400 Rh2CG515800 Rh2CG515900 Rh2CG516300 Rh2CG516400 Rh2CG525100 Rh2CG525900 Rh2DG549000 Rh2DG551900 Rh2DG554300 Rh2DG554500 Rh2DG555100 Rh2DG564800 Rh2DG565100 Rh4AG174400 Rh4AG258000 Rh4BG263600 Rh4CG274800 Rh4DG170100 Rh4DG259200 Rh4DG259500 Rh5AG094500 Rh5AG159500 Rh5AG330300 Rh5AG335300 Rh5AG335400 Rh5AG335800 Rh5BG090700 Rh5BG159000 Rh5BG341000 Rh5BG344600 Rh5BG344800 Rh5BG345200 Rh5CG173200 Rh5CG372600 Rh5CG372700 Rh5CG373100 Rh5DG090200 Rh5DG159000 Rh5DG353800 Rh5DG357700 Rh5DG357900 Rh5DG358300 Rh6AG053400 Rh7AG176500 Rh7AG301900 Rh7AG439800 Rh7BG294700 Rh7BG412800 Rh7CG185600 Rh7CG320600 Rh7CG460400 Rh7CG460500 Rh7CG460900 Rh7CG461300 Rh7DG179500 Rh7DG303400 Rh7DG429500 Rh7DG429600
rosa_wichuraiana Rw0G019480 Rw1G012510 Rw1G015180 Rw2G001890 Rw2G043550 Rw2G043740 Rw2G043960 Rw2G043970 Rw2G044020 Rw2G044030 Rw2G044080 Rw2G044100 Rw2G044850 Rw2G044910 Rw4G014610 Rw4G022270 Rw4G022280 Rw4G022310 Rw5G008250 Rw5G014230 Rw5G031190 Rw5G031640 Rw5G031650 Rw5G031680 Rw6G004800 Rw7G015520 Rw7G025750 Rw7G036370 Rw7G036390 Rw7G036410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 127, 158, 340
AccB7I CCANNNNNTGG 1 cut(s) 174
AciI CCGC 3 cut(s) 71, 84, 118
AclI AACGTT 1 cut(s) 140
AcsI RAATTY 1 cut(s) 258
AfiI CCNNNNNNNGG 2 cut(s) 174, 328
AgsI TTSAA 3 cut(s) 51, 154, 349
AjiI CACGTC 1 cut(s) 39
AjnI CCWGG 2 cut(s) 54, 275
Alw21I GWGCWC 1 cut(s) 44
AlwNI CAGNNNCTG 1 cut(s) 80
ApeKI GCWGC 1 cut(s) 80
ApoI RAATTY 1 cut(s) 258
AspS9I GGNCC 1 cut(s) 272
AsuC2I CCSGG 1 cut(s) 147
AvaII GGWCC 1 cut(s) 272
BanI GGYRCC 3 cut(s) 127, 158, 340
BanII GRGCYC 1 cut(s) 195
BbsI GAAGAC 1 cut(s) 217
Bbv12I GWGCWC 1 cut(s) 44
BbvI GCAGC 1 cut(s) 67
BccI CCATC 4 cut(s) 7, 89, 179, 349
BciT130I CCWGG 2 cut(s) 56, 277
BcnI CCSGG 1 cut(s) 147
BisI GCNGC 3 cut(s) 72, 81, 84
BlsI GCNGC 3 cut(s) 73, 82, 85
Bme1390I CCNGG 3 cut(s) 56, 147, 277
Bme18I GGWCC 1 cut(s) 272
BmgBI CACGTC 1 cut(s) 39
BmgT120I GGNCC 1 cut(s) 272
BmiI GGNNCC 5 cut(s) 129, 160, 273, 274, 342
BmrFI CCNGG 3 cut(s) 56, 147, 277
BmsI GCATC 1 cut(s) 196
BoxI GACNNNNGTC 1 cut(s) 324
BpiI GAAGAC 1 cut(s) 217
BpuMI CCSGG 1 cut(s) 147
BsaJI CCNNGG 2 cut(s) 54, 275
BsaWI WCCGGW 1 cut(s) 328
Bsc4I CCNNNNNNNGG 2 cut(s) 174, 328
Bse1I ACTGG 1 cut(s) 229
BseBI CCWGG 2 cut(s) 56, 277
BseDI CCNNGG 2 cut(s) 54, 275
BseGI GGATG 2 cut(s) 100, 211
BseLI CCNNNNNNNGG 2 cut(s) 174, 328
BseMII CTCAG 1 cut(s) 337
BseNI ACTGG 1 cut(s) 229
BseRI GAGGAG 1 cut(s) 350
BseXI GCAGC 1 cut(s) 67
BseYI CCCAGC 1 cut(s) 188
BshNI GGYRCC 3 cut(s) 127, 158, 340
BsiHKAI GWGCWC 1 cut(s) 44
BsiSI CCGG 2 cut(s) 146, 329
BslFI GGGAC 1 cut(s) 285
BslI CCNNNNNNNGG 2 cut(s) 174, 328
BsmFI GGGAC 1 cut(s) 285
Bsp1286I GDGCHC 2 cut(s) 44, 195
Bsp143I GATC 1 cut(s) 214
BspACI CCGC 3 cut(s) 71, 84, 118
BspCNI CTCAG 1 cut(s) 336
BspLI GGNNCC 5 cut(s) 129, 160, 273, 274, 342
BspT107I GGYRCC 3 cut(s) 127, 158, 340
BsrI ACTGG 1 cut(s) 229
BssECI CCNNGG 2 cut(s) 54, 275
BssMI GATC 1 cut(s) 214
Bst2UI CCWGG 2 cut(s) 56, 277
BstAPI GCANNNNNTGC 1 cut(s) 80
BstDEI CTNAG 1 cut(s) 323
BstF5I GGATG 2 cut(s) 100, 211
BstKTI GATC 1 cut(s) 217
BstMBI GATC 1 cut(s) 214
BstMWI GCNNNNNNNGC 3 cut(s) 77, 80, 134
BstNI CCWGG 2 cut(s) 56, 277
BstPAI GACNNNNGTC 1 cut(s) 324
BstSCI CCNGG 3 cut(s) 54, 145, 275
BstV1I GCAGC 1 cut(s) 67
BstV2I GAAGAC 1 cut(s) 217
BstXI CCANNNNNNTGG 1 cut(s) 301
BtrI CACGTC 1 cut(s) 39
BtsCI GGATG 2 cut(s) 100, 211
CaiI CAGNNNCTG 1 cut(s) 80
Cfr13I GGNCC 1 cut(s) 272
CviAII CATG 3 cut(s) 266, 295, 352
CviJI RGCY 3 cut(s) 80, 188, 193
CviKI_1 RGCY 3 cut(s) 80, 188, 193
DdeI CTNAG 1 cut(s) 323
DpnI GATC 1 cut(s) 216
DpnII GATC 1 cut(s) 214
Eco24I GRGCYC 1 cut(s) 195
Eco47I GGWCC 1 cut(s) 272
EcoO109I RGGNCCY 1 cut(s) 272
EcoRII CCWGG 2 cut(s) 54, 275
EcoT38I GRGCYC 1 cut(s) 195
FaeI CATG 3 cut(s) 269, 298, 355
FaiI YATR 9 cut(s) 29, 108, 110, 164, 248, 267, 296, 315, 353
FaqI GGGAC 1 cut(s) 285
FatI CATG 3 cut(s) 265, 294, 351
Fnu4HI GCNGC 3 cut(s) 72, 81, 84
FokI GGATG 2 cut(s) 107, 218
FriOI GRGCYC 1 cut(s) 195
Fsp4HI GCNGC 3 cut(s) 72, 81, 84
GluI GCNGC 3 cut(s) 72, 81, 84
GsaI CCCAGC 1 cut(s) 192
HapII CCGG 2 cut(s) 146, 329
Hin1II CATG 3 cut(s) 269, 298, 355
HincII GTYRAC 1 cut(s) 36
HindII GTYRAC 1 cut(s) 36
HinfI GANTC 2 cut(s) 47, 150
HpaII CCGG 2 cut(s) 146, 329
Hpy166II GTNNAC 1 cut(s) 36
Hpy188I TCNGA 1 cut(s) 46
Hpy188III TCNNGA 3 cut(s) 92, 203, 235
Hpy8I GTNNAC 1 cut(s) 36
HpyAV CCTTC 1 cut(s) 11
HpyCH4IV ACGT 2 cut(s) 38, 140
HpyCH4V TGCA 2 cut(s) 209, 265
HpyF10VI GCNNNNNNNGC 3 cut(s) 77, 80, 134
HpyF3I CTNAG 1 cut(s) 323
HpySE526I ACGT 2 cut(s) 38, 140
Hsp92II CATG 3 cut(s) 269, 298, 355
KflI GGGWCCC 1 cut(s) 272
Kzo9I GATC 1 cut(s) 214
Lsp1109I GCAGC 1 cut(s) 67
LweI GCATC 1 cut(s) 196
MaeII ACGT 2 cut(s) 38, 140
MalI GATC 1 cut(s) 216
MboI GATC 1 cut(s) 214
MboII GAAGA 1 cut(s) 217
MhlI GDGCHC 2 cut(s) 44, 195
MluCI AATT 2 cut(s) 100, 258
MnlI CCTC 5 cut(s) 60, 235, 328, 331, 332
MslI CAYNNNNRTG 1 cut(s) 299
MspI CCGG 2 cut(s) 146, 329
MspR9I CCNGG 3 cut(s) 56, 147, 277
MvaI CCWGG 2 cut(s) 56, 277
MwoI GCNNNNNNNGC 3 cut(s) 77, 80, 134
NciI CCSGG 1 cut(s) 147
NdeII GATC 1 cut(s) 214
NlaIII CATG 3 cut(s) 269, 298, 355
NlaIV GGNNCC 5 cut(s) 129, 160, 273, 274, 342
PfeI GAWTC 2 cut(s) 47, 150
PflMI CCANNNNNTGG 1 cut(s) 174
PkrI GCNGC 3 cut(s) 73, 82, 85
PpuMI RGGWCCY 1 cut(s) 272
PshAI GACNNNNGTC 1 cut(s) 324
Psp1406I AACGTT 1 cut(s) 140
Psp5II RGGWCCY 1 cut(s) 272
Psp6I CCWGG 2 cut(s) 54, 275
PspFI CCCAGC 1 cut(s) 188
PspGI CCWGG 2 cut(s) 54, 275
PspN4I GGNNCC 5 cut(s) 129, 160, 273, 274, 342
PspPI GGNCC 1 cut(s) 272
PspPPI RGGWCCY 1 cut(s) 272
PstNI CAGNNNCTG 1 cut(s) 80
RseI CAYNNNNRTG 1 cut(s) 299
SatI GCNGC 3 cut(s) 72, 81, 84
Sau3AI GATC 1 cut(s) 214
Sau96I GGNCC 1 cut(s) 272
ScrFI CCNGG 3 cut(s) 56, 147, 277
SduI GDGCHC 2 cut(s) 44, 195
SetI ASST 7 cut(s) 22, 41, 143, 246, 324, 342, 365
SfaNI GCATC 1 cut(s) 196
SinI GGWCC 1 cut(s) 272
SmiMI CAYNNNNRTG 1 cut(s) 299
Sse9I AATT 2 cut(s) 100, 258
SsiI CCGC 3 cut(s) 71, 84, 118
StyD4I CCNGG 3 cut(s) 54, 145, 275
TaiI ACGT 2 cut(s) 41, 143
TaqI TCGA 3 cut(s) 234, 256, 286
TasI AATT 2 cut(s) 100, 258
TauI GCSGC 2 cut(s) 74, 86
TfiI GAWTC 2 cut(s) 47, 150
TseI GCWGC 1 cut(s) 80
Van91I CCANNNNNTGG 1 cut(s) 174
VpaK11BI GGWCC 1 cut(s) 272
XapI RAATTY 1 cut(s) 258
XcmI CCANNNNNNNNNTGG 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.