Rmu_sc0007769.1_g000013

Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007769.1
Physical Location & Seq
Forward (+)
79456 .. 81025
1570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007769.1_g000013.1.cds

Sequence Viewer

Length: 642 bp
atgggacttctgggaatctgggtggccattctcatgacgccttgtgcatatttctgggggaggaaatggaatttgcttgacctagtcacagcaacgatgttcgtgtcgatccatgtccttgctttatttgcgccgtttcatttcaactggtctgcatttttcctcatgttggctctcggttatgccaccggcttgggaataactctgtcgtaccacagaaaccttgcgcacaggagtttcaggcttcccaagtacctcgagtacttgtttgcatatatcgccgttctttcggctgagggagtgaggatggtaattgttttccacagcactttgctagtaaattcggctgggcacacatgggggtatcaagcatggaacaccggtgatctatctaagaacctttggtggttaggattgcttggactaggagaaggatggcacaacaaccaccacgctttcgaatactcggctcgacaaggcctcgaatggtggcagattgacatgacttggtacgtcataagatttcttgaagctctagggttggcaaaagatgtgaaactaccatctgaagctcaaaagaaacgcaaagctttagagaccagaacaaccgtcgcttctcatgaaataagctacgaagattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

213

Amino Acids

24.52

Weight (kDa)

8.63

Isoelectric Point (pI)

20.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000059)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06080 AT1G06080 AT2G31360 AT2G31360
fragaria_vesca FvH4_1g04480 FvH4_1g04480 FvH4_1g04480 FvH4_1g04480 FvH4_3g00350 FvH4_3g28040 FvH4_3g28040 FvH4_3g28040 FvH4_3g28050 FvH4_5g34260 FvH4_6g42131 FvH4_6g42140 FvH4_6g42171 FvH4_6g42171 FvH4_6g42171 FvH4_6g42171 FvH4_6g42171 FvH4_6g42311 FvH4_6g42312 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640
malus_domestica MD00G1098700.v1.1 MD00G1139800.v1.1 MD00G1174400.v1.1 MD02G1133600.v1.1 MD02G1271200.v1.1 MD09G1114000.v1.1 MD09G1114100.v1.1 MD09G1114200.v1.1 MD11G1194300.v1.1 MD15G1438800.v1.1 MD17G1105800.v1.1 MD17G1105900.v1.1
prunus_persica Prupe.3G210300_v2.0.a1 Prupe.3G210300_v2.0.a1 Prupe.3G210400_v2.0.a1 Prupe.3G210500_v2.0.a1 Prupe.3G210600_v2.0.a1 Prupe.3G210600_v2.0.a1 Prupe.4G228700_v2.0.a1 Prupe.4G228800_v2.0.a1 Prupe.4G228900_v2.0.a1 Prupe.4G229000_v2.0.a1 Prupe.4G229300_v2.0.a1 Prupe.4G229500_v2.0.a1 Prupe.4G229600_v2.0.a1 Prupe.4G259100_v2.0.a1 Prupe.4G259400_v2.0.a1 Prupe.4G259500_v2.0.a1 Prupe.4G259600_v2.0.a1 Prupe.4G259600_v2.0.a1 Prupe.4G259600_v2.0.a1 Prupe.4G259800_v2.0.a1 Prupe.4G259900_v2.0.a1
pyrus_communis pycom03g12440 pycom09g03830 pycom09g03840 pycom09g03850 pycom11g16300 pycom15g38680 pycom17g09850
rosa_chinensis RchiOBHm_Chr1g0337221 RchiOBHm_Chr1g0343481 RchiOBHm_Chr1g0343491 RchiOBHm_Chr1g0343531 RchiOBHm_Chr1g0343551 RchiOBHm_Chr1g0343711 RchiOBHm_Chr1g0343721 RchiOBHm_Chr1g0343731 RchiOBHm_Chr1g0360301 RchiOBHm_Chr2g0086981 RchiOBHm_Chr2g0142871 RchiOBHm_Chr2g0156531 RchiOBHm_Chr2g0157491 RchiOBHm_Chr2g0157791 RchiOBHm_Chr2g0158051 RchiOBHm_Chr2g0158061 RchiOBHm_Chr2g0158141 RchiOBHm_Chr2g0158151 RchiOBHm_Chr2g0158221 RchiOBHm_Chr2g0158251 RchiOBHm_Chr2g0159451 RchiOBHm_Chr4g0403611 RchiOBHm_Chr4g0412621 RchiOBHm_Chr4g0424961 RchiOBHm_Chr4g0425001 RchiOBHm_Chr4g0425091 RchiOBHm_Chr5g0012311 RchiOBHm_Chr5g0022121 RchiOBHm_Chr5g0050081 RchiOBHm_Chr5g0050721 RchiOBHm_Chr5g0050731 RchiOBHm_Chr5g0050761 RchiOBHm_Chr6g0252581 RchiOBHm_Chr7g0199141 RchiOBHm_Chr7g0216811 RchiOBHm_Chr7g0234331 RchiOBHm_Chr7g0234341 RchiOBHm_Chr7g0234371 RchiOBHm_Chr7g0234431 RchiOBHm_Chr7g0234681 RchiOBHm_Chr7g0234741
rosa_laevigata RLG00000001215 RLG00000001222 RLG00000001223 RLG00000001229 RLG00000003811 RLG00000007410 RLG00000015084 RLG00000017931 RLG00000020899 RLG00000020919 RLG00000020994 RLG00000021020 RLG00000021055 RLG00000021056 RLG00000021057 RLG00000021063 RLG00000021065 RLG00000021066 RLG00000021069 RLG00000021071 RLG00000021156 RLG00000024999 RLG00000025005 RLG00000028964 RLG00000029292 RLG00000032646 RLG00000034725 RLG00000034726 RLG00000034730
rosa_multiflora Rmu_co8371849.1_g000001 Rmu_co8422897.1_g000001 Rmu_sc0000195.1_g000039 Rmu_sc0000333.1_g000003 Rmu_sc0000419.1_g000030 Rmu_sc0000419.1_g000034 Rmu_sc0002016.1_g000040 Rmu_sc0002117.1_g000018 Rmu_sc0002117.1_g000023 Rmu_sc0002160.1_g000002 Rmu_sc0002204.1_g000008 Rmu_sc0002775.1_g000001 Rmu_sc0002775.1_g000013 Rmu_sc0002801.1_g000001 Rmu_sc0002801.1_g000013 Rmu_sc0004434.1_g000003 Rmu_sc0004864.1_g000019 Rmu_sc0006966.1_g000006 Rmu_sc0007763.1_g000002 Rmu_sc0007769.1_g000006 Rmu_sc0007769.1_g000013 Rmu_sc0008904.1_g000001 Rmu_sc0013250.1_g000001 Rmu_sc0013327.1_g000004 Rmu_sc0037251.1_g000001 Rmu_ssc0000217.1_g000013 Rmu_ssc0000420.1_g000014 Rmu_ssc0000420.1_g000016
rosa_roxburghii Rroxscaffold_1G00030000 Rroxscaffold_1G00030030 Rroxscaffold_1G00030060 Rroxscaffold_2G00090560 Rroxscaffold_2G00090580 Rroxscaffold_2G00091590 Rroxscaffold_2G00091630 Rroxscaffold_2G00091670 Rroxscaffold_2G00091700 Rroxscaffold_2G00091950 Rroxscaffold_2G00092160 Rroxscaffold_2G00132010 Rroxscaffold_3G00226740 Rroxscaffold_3G00226760 Rroxscaffold_5G00356990 Rroxscaffold_5G00367150 Rroxscaffold_5G00368290 Rroxscaffold_7G00212540
rosa_rugosa Rorug01G0132700.1 Rorug01G0132800.1 Rorug01G0132900.1 Rorug01G0133000.1 Rorug01G0133100.1 Rorug01G0133200.1 Rorug01G0167200 Rorug01G0471200 Rorug02G0461800 Rorug02G0463400 Rorug02G0463500 Rorug02G0463600 Rorug02G0463700 Rorug02G0463700 Rorug02G0463700 Rorug02G0465500 Rorug02G0465800 Rorug02G0465900.1 Rorug02G0466000 Rorug02G0466100 Rorug02G0466200 Rorug02G0466300 Rorug02G0466600 Rorug02G0475900 Rorug04G0200800 Rorug04G0201000 Rorug04G0201100 Rorug04G0384700 Rorug05G0000500 Rorug05G0257600 Rorug05G0257600 Rorug05G0263300 Rorug05G0263700 Rorug05G0537100 Rorug05G0579200 Rorug05G0579200 Rorug07G0155500 Rorug07G0163100 Rorug07G0283400 Rorug07G0284800 Rorug07G0285400
rosa_samantha Rh1AG184700 Rh1BG152200 Rh1DG184100 Rh2AG024000 Rh2AG525800 Rh2AG529100 Rh2AG531600 Rh2AG531800 Rh2AG532600 Rh2AG532700 Rh2AG542500 Rh2BG024600 Rh2BG540500 Rh2BG543000 Rh2BG546000 Rh2BG546100 Rh2BG546500 Rh2BG555700 Rh2CG024700 Rh2CG510500 Rh2CG513400 Rh2CG515800 Rh2CG515900 Rh2CG516300 Rh2CG516400 Rh2CG525100 Rh2CG525900 Rh2DG549000 Rh2DG551900 Rh2DG554300 Rh2DG554500 Rh2DG555100 Rh2DG564800 Rh2DG565100 Rh4AG174400 Rh4AG258000 Rh4BG263600 Rh4CG274800 Rh4DG170100 Rh4DG259200 Rh4DG259500 Rh5AG094500 Rh5AG159500 Rh5AG330300 Rh5AG335300 Rh5AG335400 Rh5AG335800 Rh5BG090700 Rh5BG159000 Rh5BG341000 Rh5BG344600 Rh5BG344800 Rh5BG345200 Rh5CG173200 Rh5CG372600 Rh5CG372700 Rh5CG373100 Rh5DG090200 Rh5DG159000 Rh5DG353800 Rh5DG357700 Rh5DG357900 Rh5DG358300 Rh6AG053400 Rh7AG176500 Rh7AG301900 Rh7AG439800 Rh7BG294700 Rh7BG412800 Rh7CG185600 Rh7CG320600 Rh7CG460400 Rh7CG460500 Rh7CG460900 Rh7CG461300 Rh7DG179500 Rh7DG303400 Rh7DG429500 Rh7DG429600
rosa_wichuraiana Rw0G019480 Rw1G012510 Rw1G015180 Rw2G001890 Rw2G043550 Rw2G043740 Rw2G043960 Rw2G043970 Rw2G044020 Rw2G044030 Rw2G044080 Rw2G044100 Rw2G044850 Rw2G044910 Rw4G014610 Rw4G022270 Rw4G022280 Rw4G022310 Rw5G008250 Rw5G014230 Rw5G031190 Rw5G031640 Rw5G031650 Rw5G031680 Rw6G004800 Rw7G015520 Rw7G025750 Rw7G036370 Rw7G036390 Rw7G036410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 228
AclWI GGATC 1 cut(s) 103
AcoI YGGCCR 1 cut(s) 24
AcsI RAATTY 2 cut(s) 70, 340
AcuI CTGAAG 1 cut(s) 588
AcyI GRCGYC 1 cut(s) 38
AfaI GTAC 4 cut(s) 212, 254, 263, 512
AfiI CCNNNNNNNGG 1 cut(s) 169
AgeI ACCGGT 1 cut(s) 380
AgsI TTSAA 2 cut(s) 145, 530
AluBI AGCT 4 cut(s) 533, 572, 590, 630
AluI AGCT 4 cut(s) 533, 572, 590, 630
Alw26I GTCTC 1 cut(s) 590
AlwI GGATC 1 cut(s) 103
Ama87I CYCGRG 1 cut(s) 257
AoxI GGCC 2 cut(s) 24, 478
ApoI RAATTY 2 cut(s) 70, 340
AsiGI ACCGGT 1 cut(s) 380
AspLEI GCGC 2 cut(s) 133, 229
AsuHPI GGTGA 1 cut(s) 395
AsuII TTCGAA 1 cut(s) 459
AvaI CYCGRG 1 cut(s) 257
BaeGI GKGCMC 1 cut(s) 354
BalI TGGCCA 1 cut(s) 26
BbvCI CCTCAGC 1 cut(s) 294
BccI CCATC 3 cut(s) 301, 429, 571
BceAI ACGGC 2 cut(s) 118, 266
BcoDI GTCTC 1 cut(s) 590
BfaI CTAG 4 cut(s) 83, 335, 425, 536
BmcAI AGTACT 1 cut(s) 263
BmeT110I CYCGRG 1 cut(s) 257
Bpu10I CCTNAGC 1 cut(s) 294
Bpu14I TTCGAA 1 cut(s) 459
BsaHI GRCGYC 1 cut(s) 38
BsaI GGTCTC 1 cut(s) 590
BsaWI WCCGGW 1 cut(s) 380
Bsc4I CCNNNNNNNGG 1 cut(s) 169
Bse118I RCCGGY 2 cut(s) 188, 380
Bse1I ACTGG 1 cut(s) 152
BseGI GGATG 2 cut(s) 312, 440
BseLI CCNNNNNNNGG 1 cut(s) 169
BseMII CTCAG 1 cut(s) 285
BseNI ACTGG 1 cut(s) 152
BseSI GKGCMC 1 cut(s) 354
BseYI CCCAGC 1 cut(s) 347
BshFI GGCC 2 cut(s) 26, 480
BshTI ACCGGT 1 cut(s) 380
BsiHKCI CYCGRG 1 cut(s) 257
BsiSI CCGG 2 cut(s) 189, 381
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 1 cut(s) 169
BsmAI GTCTC 1 cut(s) 590
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 2 cut(s) 26, 480
Bso31I GGTCTC 1 cut(s) 590
BsoBI CYCGRG 1 cut(s) 257
Bsp119I TTCGAA 1 cut(s) 459
Bsp1286I GDGCHC 1 cut(s) 354
Bsp143I GATC 2 cut(s) 108, 385
BspANI GGCC 2 cut(s) 26, 480
BspCNI CTCAG 1 cut(s) 286
BspHI TCATGA 2 cut(s) 33, 619
BspPI GGATC 1 cut(s) 103
BspT104I TTCGAA 1 cut(s) 459
BspTNI GGTCTC 1 cut(s) 590
BsrFI RCCGGY 2 cut(s) 188, 380
BsrI ACTGG 1 cut(s) 152
BssAI RCCGGY 2 cut(s) 188, 380
BssMI GATC 2 cut(s) 108, 385
BssNI GRCGYC 1 cut(s) 38
Bst4CI ACNGT 1 cut(s) 610
BstACI GRCGYC 1 cut(s) 38
BstBI TTCGAA 1 cut(s) 459
BstDEI CTNAG 2 cut(s) 294, 393
BstF5I GGATG 2 cut(s) 312, 440
BstHHI GCGC 2 cut(s) 133, 229
BstKTI GATC 2 cut(s) 111, 388
BstMAI GTCTC 1 cut(s) 590
BstMBI GATC 2 cut(s) 108, 385
BstMWI GCNNNNNNNGC 2 cut(s) 128, 278
BstSLI GKGCMC 1 cut(s) 354
BstXI CCANNNNNNTGG 1 cut(s) 193
BsuRI GGCC 2 cut(s) 26, 480
BtsCI GGATG 2 cut(s) 312, 440
CciI TCATGA 2 cut(s) 33, 619
CfoI GCGC 2 cut(s) 133, 229
Cfr10I RCCGGY 2 cut(s) 188, 380
CseI GACGC 1 cut(s) 46
Csp6I GTAC 4 cut(s) 211, 253, 262, 511
CspAI ACCGGT 1 cut(s) 380
CviAII CATG 7 cut(s) 34, 113, 166, 357, 372, 502, 620
CviQI GTAC 4 cut(s) 211, 253, 262, 511
DdeI CTNAG 2 cut(s) 294, 393
DpnI GATC 2 cut(s) 110, 387
DpnII GATC 2 cut(s) 108, 385
EaeI YGGCCR 1 cut(s) 24
Eco147I AGGCCT 1 cut(s) 480
Eco31I GGTCTC 1 cut(s) 590
Eco57I CTGAAG 1 cut(s) 588
Eco88I CYCGRG 1 cut(s) 257
FaeI CATG 7 cut(s) 37, 116, 169, 360, 375, 505, 623
FaqI GGGAC 1 cut(s) 18
FatI CATG 7 cut(s) 33, 112, 165, 356, 371, 501, 619
FokI GGATG 2 cut(s) 319, 447
FspBI CTAG 4 cut(s) 83, 335, 425, 536
FspI TGCGCA 1 cut(s) 228
GlaI GCGC 2 cut(s) 132, 228
GsaI CCCAGC 1 cut(s) 351
HaeIII GGCC 2 cut(s) 26, 480
HapII CCGG 2 cut(s) 189, 381
HgaI GACGC 1 cut(s) 46
HhaI GCGC 2 cut(s) 133, 229
Hin1I GRCGYC 1 cut(s) 38
Hin1II CATG 7 cut(s) 37, 116, 169, 360, 375, 505, 623
Hin6I GCGC 2 cut(s) 131, 227
HinP1I GCGC 2 cut(s) 131, 227
HindIII AAGCTT 1 cut(s) 588
HinfI GANTC 1 cut(s) 15
HpaII CCGG 2 cut(s) 189, 381
HphI GGTGA 1 cut(s) 395
Hpy188I TCNGA 1 cut(s) 568
Hpy188III TCNNGA 3 cut(s) 34, 527, 620
Hpy99I CGWCG 1 cut(s) 614
HpyAV CCTTC 1 cut(s) 425
HpyCH4III ACNGT 1 cut(s) 610
HpyCH4IV ACGT 1 cut(s) 513
HpyCH4V TGCA 3 cut(s) 47, 155, 272
HpyF10VI GCNNNNNNNGC 2 cut(s) 128, 278
HpyF3I CTNAG 2 cut(s) 294, 393
HpySE526I ACGT 1 cut(s) 513
Hsp92I GRCGYC 1 cut(s) 38
Hsp92II CATG 7 cut(s) 37, 116, 169, 360, 375, 505, 623
HspAI GCGC 2 cut(s) 131, 227
Kzo9I GATC 2 cut(s) 108, 385
LpnPI CCDG 9 cut(s) 4, 40, 133, 202, 217, 226, 333, 394, 613
MaeI CTAG 4 cut(s) 83, 335, 425, 536
MaeII ACGT 1 cut(s) 513
MaeIII GTNAC 1 cut(s) 85
MalI GATC 2 cut(s) 110, 387
MboI GATC 2 cut(s) 108, 385
MhlI GDGCHC 1 cut(s) 354
MlsI TGGCCA 1 cut(s) 26
MluCI AATT 3 cut(s) 70, 312, 340
MluNI TGGCCA 1 cut(s) 26
MnlI CCTC 6 cut(s) 54, 173, 266, 289, 297, 491
Mox20I TGGCCA 1 cut(s) 26
MscI TGGCCA 1 cut(s) 26
MseI TTAA 1 cut(s) 640
MslI CAYNNNNRTG 1 cut(s) 32
Msp20I TGGCCA 1 cut(s) 26
MspI CCGG 2 cut(s) 189, 381
MwoI GCNNNNNNNGC 2 cut(s) 128, 278
NdeII GATC 2 cut(s) 108, 385
NlaIII CATG 7 cut(s) 37, 116, 169, 360, 375, 505, 623
NmeAIII GCCGAG 1 cut(s) 446
NmuCI GTSAC 1 cut(s) 85
NsbI TGCGCA 1 cut(s) 228
NspV TTCGAA 1 cut(s) 459
PaeR7I CTCGAG 1 cut(s) 257
PagI TCATGA 2 cut(s) 33, 619
PceI AGGCCT 1 cut(s) 480
PfeI GAWTC 1 cut(s) 15
PflFI GACNNNGTC 1 cut(s) 83
PinAI ACCGGT 1 cut(s) 380
PspFI CCCAGC 1 cut(s) 347
PspXI VCTCGAGB 1 cut(s) 257
PsyI GACNNNGTC 1 cut(s) 83
RsaI GTAC 4 cut(s) 212, 254, 263, 512
RsaNI GTAC 4 cut(s) 211, 253, 262, 511
RseI CAYNNNNRTG 1 cut(s) 32
SaqAI TTAA 1 cut(s) 640
Sau3AI GATC 2 cut(s) 108, 385
ScaI AGTACT 1 cut(s) 263
SduI GDGCHC 1 cut(s) 354
SetI ASST 9 cut(s) 84, 225, 258, 402, 516, 535, 574, 592, 632
Sfr274I CTCGAG 1 cut(s) 257
SfuI TTCGAA 1 cut(s) 459
SgrAI CRCCGGYG 1 cut(s) 380
SlaI CTCGAG 1 cut(s) 257
SmiMI CAYNNNNRTG 1 cut(s) 32
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
Sse9I AATT 3 cut(s) 70, 312, 340
SseBI AGGCCT 1 cut(s) 480
SspMI CTAG 4 cut(s) 83, 335, 425, 536
StuI AGGCCT 1 cut(s) 480
TaaI ACNGT 1 cut(s) 610
TaiI ACGT 1 cut(s) 516
TaqI TCGA 5 cut(s) 107, 258, 459, 472, 483
TasI AATT 3 cut(s) 70, 312, 340
TatI WGTACW 1 cut(s) 261
TfiI GAWTC 1 cut(s) 15
Tru1I TTAA 1 cut(s) 640
Tru9I TTAA 1 cut(s) 640
TseFI GTSAC 1 cut(s) 85
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 2 cut(s) 128, 636
Tth111I GACNNNGTC 1 cut(s) 83
XapI RAATTY 2 cut(s) 70, 340
XhoI CTCGAG 1 cut(s) 257
XspI CTAG 4 cut(s) 83, 335, 425, 536
ZrmI AGTACT 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.