Rmu_ssc0000420.1_g000014

Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000420.1
Physical Location & Seq
Forward (+)
78354 .. 79252
899 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000420.1_g000014.1.cds

Sequence Viewer

Length: 606 bp
atggtttatttgcagggaagtccgatagaatgggtgagcacgcaccgataccatcaccagtttacagacacagagagagaccctcacagccccttgaagggtttctggtttagtcatatgggttggatctttgatagcacttctcgatatcaaaaaaatggaggattgaagaacgttgaggatatgaagaagcagttgttctatagatttcttcatcgtacataccttttacacataattgtttctggagcttcgctctatgccctaggtggactacctttctttatttggggaatgggagcgaggacggtatatgttttccacttcaccttgctagtaaactcggccggtcacatctggggaaaacaagtatggaacaccggcgacctgtcaaagaacaattggtggttgggatggatcgcacttggagaagggtggcacgacaaccatcatgcatttgaatactcagctcgacaaggtctggaatggtggcaagtcgacttgacttggtatgtaatcacagctcttcaagcacttgggttggcaactgacgtcaaagttcccactgaatctcagattcgtcgcaaagccctcaagaaatattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

201

Amino Acids

23.59

Weight (kDa)

9.37

Isoelectric Point (pI)

33.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000059)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06080 AT1G06080 AT2G31360 AT2G31360
fragaria_vesca FvH4_1g04480 FvH4_1g04480 FvH4_1g04480 FvH4_1g04480 FvH4_3g00350 FvH4_3g28040 FvH4_3g28040 FvH4_3g28040 FvH4_3g28050 FvH4_5g34260 FvH4_6g42131 FvH4_6g42140 FvH4_6g42171 FvH4_6g42171 FvH4_6g42171 FvH4_6g42171 FvH4_6g42171 FvH4_6g42311 FvH4_6g42312 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640
malus_domestica MD00G1098700.v1.1 MD00G1139800.v1.1 MD00G1174400.v1.1 MD02G1133600.v1.1 MD02G1271200.v1.1 MD09G1114000.v1.1 MD09G1114100.v1.1 MD09G1114200.v1.1 MD11G1194300.v1.1 MD15G1438800.v1.1 MD17G1105800.v1.1 MD17G1105900.v1.1
prunus_persica Prupe.3G210300_v2.0.a1 Prupe.3G210300_v2.0.a1 Prupe.3G210400_v2.0.a1 Prupe.3G210500_v2.0.a1 Prupe.3G210600_v2.0.a1 Prupe.3G210600_v2.0.a1 Prupe.4G228700_v2.0.a1 Prupe.4G228800_v2.0.a1 Prupe.4G228900_v2.0.a1 Prupe.4G229000_v2.0.a1 Prupe.4G229300_v2.0.a1 Prupe.4G229500_v2.0.a1 Prupe.4G229600_v2.0.a1 Prupe.4G259100_v2.0.a1 Prupe.4G259400_v2.0.a1 Prupe.4G259500_v2.0.a1 Prupe.4G259600_v2.0.a1 Prupe.4G259600_v2.0.a1 Prupe.4G259600_v2.0.a1 Prupe.4G259800_v2.0.a1 Prupe.4G259900_v2.0.a1
pyrus_communis pycom03g12440 pycom09g03830 pycom09g03840 pycom09g03850 pycom11g16300 pycom15g38680 pycom17g09850
rosa_chinensis RchiOBHm_Chr1g0337221 RchiOBHm_Chr1g0343481 RchiOBHm_Chr1g0343491 RchiOBHm_Chr1g0343531 RchiOBHm_Chr1g0343551 RchiOBHm_Chr1g0343711 RchiOBHm_Chr1g0343721 RchiOBHm_Chr1g0343731 RchiOBHm_Chr1g0360301 RchiOBHm_Chr2g0086981 RchiOBHm_Chr2g0142871 RchiOBHm_Chr2g0156531 RchiOBHm_Chr2g0157491 RchiOBHm_Chr2g0157791 RchiOBHm_Chr2g0158051 RchiOBHm_Chr2g0158061 RchiOBHm_Chr2g0158141 RchiOBHm_Chr2g0158151 RchiOBHm_Chr2g0158221 RchiOBHm_Chr2g0158251 RchiOBHm_Chr2g0159451 RchiOBHm_Chr4g0403611 RchiOBHm_Chr4g0412621 RchiOBHm_Chr4g0424961 RchiOBHm_Chr4g0425001 RchiOBHm_Chr4g0425091 RchiOBHm_Chr5g0012311 RchiOBHm_Chr5g0022121 RchiOBHm_Chr5g0050081 RchiOBHm_Chr5g0050721 RchiOBHm_Chr5g0050731 RchiOBHm_Chr5g0050761 RchiOBHm_Chr6g0252581 RchiOBHm_Chr7g0199141 RchiOBHm_Chr7g0216811 RchiOBHm_Chr7g0234331 RchiOBHm_Chr7g0234341 RchiOBHm_Chr7g0234371 RchiOBHm_Chr7g0234431 RchiOBHm_Chr7g0234681 RchiOBHm_Chr7g0234741
rosa_laevigata RLG00000001215 RLG00000001222 RLG00000001223 RLG00000001229 RLG00000003811 RLG00000007410 RLG00000015084 RLG00000017931 RLG00000020899 RLG00000020919 RLG00000020994 RLG00000021020 RLG00000021055 RLG00000021056 RLG00000021057 RLG00000021063 RLG00000021065 RLG00000021066 RLG00000021069 RLG00000021071 RLG00000021156 RLG00000024999 RLG00000025005 RLG00000028964 RLG00000029292 RLG00000032646 RLG00000034725 RLG00000034726 RLG00000034730
rosa_multiflora Rmu_co8371849.1_g000001 Rmu_co8422897.1_g000001 Rmu_sc0000195.1_g000039 Rmu_sc0000333.1_g000003 Rmu_sc0000419.1_g000030 Rmu_sc0000419.1_g000034 Rmu_sc0002016.1_g000040 Rmu_sc0002117.1_g000018 Rmu_sc0002117.1_g000023 Rmu_sc0002160.1_g000002 Rmu_sc0002204.1_g000008 Rmu_sc0002775.1_g000001 Rmu_sc0002775.1_g000013 Rmu_sc0002801.1_g000001 Rmu_sc0002801.1_g000013 Rmu_sc0004434.1_g000003 Rmu_sc0004864.1_g000019 Rmu_sc0006966.1_g000006 Rmu_sc0007763.1_g000002 Rmu_sc0007769.1_g000006 Rmu_sc0007769.1_g000013 Rmu_sc0008904.1_g000001 Rmu_sc0013250.1_g000001 Rmu_sc0013327.1_g000004 Rmu_sc0037251.1_g000001 Rmu_ssc0000217.1_g000013 Rmu_ssc0000420.1_g000014 Rmu_ssc0000420.1_g000016
rosa_roxburghii Rroxscaffold_1G00030000 Rroxscaffold_1G00030030 Rroxscaffold_1G00030060 Rroxscaffold_2G00090560 Rroxscaffold_2G00090580 Rroxscaffold_2G00091590 Rroxscaffold_2G00091630 Rroxscaffold_2G00091670 Rroxscaffold_2G00091700 Rroxscaffold_2G00091950 Rroxscaffold_2G00092160 Rroxscaffold_2G00132010 Rroxscaffold_3G00226740 Rroxscaffold_3G00226760 Rroxscaffold_5G00356990 Rroxscaffold_5G00367150 Rroxscaffold_5G00368290 Rroxscaffold_7G00212540
rosa_rugosa Rorug01G0132700.1 Rorug01G0132800.1 Rorug01G0132900.1 Rorug01G0133000.1 Rorug01G0133100.1 Rorug01G0133200.1 Rorug01G0167200 Rorug01G0471200 Rorug02G0461800 Rorug02G0463400 Rorug02G0463500 Rorug02G0463600 Rorug02G0463700 Rorug02G0463700 Rorug02G0463700 Rorug02G0465500 Rorug02G0465800 Rorug02G0465900.1 Rorug02G0466000 Rorug02G0466100 Rorug02G0466200 Rorug02G0466300 Rorug02G0466600 Rorug02G0475900 Rorug04G0200800 Rorug04G0201000 Rorug04G0201100 Rorug04G0384700 Rorug05G0000500 Rorug05G0257600 Rorug05G0257600 Rorug05G0263300 Rorug05G0263700 Rorug05G0537100 Rorug05G0579200 Rorug05G0579200 Rorug07G0155500 Rorug07G0163100 Rorug07G0283400 Rorug07G0284800 Rorug07G0285400
rosa_samantha Rh1AG184700 Rh1BG152200 Rh1DG184100 Rh2AG024000 Rh2AG525800 Rh2AG529100 Rh2AG531600 Rh2AG531800 Rh2AG532600 Rh2AG532700 Rh2AG542500 Rh2BG024600 Rh2BG540500 Rh2BG543000 Rh2BG546000 Rh2BG546100 Rh2BG546500 Rh2BG555700 Rh2CG024700 Rh2CG510500 Rh2CG513400 Rh2CG515800 Rh2CG515900 Rh2CG516300 Rh2CG516400 Rh2CG525100 Rh2CG525900 Rh2DG549000 Rh2DG551900 Rh2DG554300 Rh2DG554500 Rh2DG555100 Rh2DG564800 Rh2DG565100 Rh4AG174400 Rh4AG258000 Rh4BG263600 Rh4CG274800 Rh4DG170100 Rh4DG259200 Rh4DG259500 Rh5AG094500 Rh5AG159500 Rh5AG330300 Rh5AG335300 Rh5AG335400 Rh5AG335800 Rh5BG090700 Rh5BG159000 Rh5BG341000 Rh5BG344600 Rh5BG344800 Rh5BG345200 Rh5CG173200 Rh5CG372600 Rh5CG372700 Rh5CG373100 Rh5DG090200 Rh5DG159000 Rh5DG353800 Rh5DG357700 Rh5DG357900 Rh5DG358300 Rh6AG053400 Rh7AG176500 Rh7AG301900 Rh7AG439800 Rh7BG294700 Rh7BG412800 Rh7CG185600 Rh7CG320600 Rh7CG460400 Rh7CG460500 Rh7CG460900 Rh7CG461300 Rh7DG179500 Rh7DG303400 Rh7DG429500 Rh7DG429600
rosa_wichuraiana Rw0G019480 Rw1G012510 Rw1G015180 Rw2G001890 Rw2G043550 Rw2G043740 Rw2G043960 Rw2G043970 Rw2G044020 Rw2G044030 Rw2G044080 Rw2G044100 Rw2G044850 Rw2G044910 Rw4G014610 Rw4G022270 Rw4G022280 Rw4G022310 Rw5G008250 Rw5G014230 Rw5G031190 Rw5G031640 Rw5G031650 Rw5G031680 Rw6G004800 Rw7G015520 Rw7G025750 Rw7G036370 Rw7G036390 Rw7G036410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 555
AccI GTMKAC 1 cut(s) 498
AclI AACGTT 1 cut(s) 174
AclWI GGATC 2 cut(s) 134, 425
AcoI YGGCCR 1 cut(s) 345
AcyI GRCGYC 1 cut(s) 552
AfaI GTAC 1 cut(s) 220
AfiI CCNNNNNNNGG 2 cut(s) 97, 98
AgsI TTSAA 4 cut(s) 97, 169, 461, 530
AluBI AGCT 3 cut(s) 251, 470, 524
AluI AGCT 3 cut(s) 251, 470, 524
Alw21I GWGCWC 1 cut(s) 41
Alw26I GTCTC 1 cut(s) 72
AlwI GGATC 2 cut(s) 134, 425
AoxI GGCC 1 cut(s) 345
Asp700I GAANNNNTTC 1 cut(s) 101
AspA2I CCTAGG 1 cut(s) 265
AsuHPI GGTGA 3 cut(s) 46, 47, 319
AvrII CCTAGG 1 cut(s) 265
Bbv12I GWGCWC 1 cut(s) 41
BccI CCATC 3 cut(s) 60, 408, 456
BcoDI GTCTC 1 cut(s) 72
BfaI CTAG 2 cut(s) 266, 335
BfmI CTRYAG 1 cut(s) 202
BlnI CCTAGG 1 cut(s) 265
BplI GAGNNNNNCTC 4 cut(s) 67, 99, 240, 272
BpmI CTGGAG 1 cut(s) 267
BpuEI CTTGAG 1 cut(s) 578
BsaHI GRCGYC 1 cut(s) 552
BsaI GGTCTC 1 cut(s) 72
BsaJI CCNNGG 1 cut(s) 265
Bsc4I CCNNNNNNNGG 2 cut(s) 97, 98
Bse118I RCCGGY 2 cut(s) 347, 380
Bse1I ACTGG 1 cut(s) 58
BseDI CCNNGG 1 cut(s) 265
BseGI GGATG 1 cut(s) 419
BseLI CCNNNNNNNGG 2 cut(s) 97, 98
BseMII CTCAG 2 cut(s) 480, 587
BseNI ACTGG 1 cut(s) 58
BseX3I CGGCCG 1 cut(s) 345
Bsh1285I CGRYCG 1 cut(s) 348
BshFI GGCC 1 cut(s) 347
BsiEI CGRYCG 1 cut(s) 348
BsiHKAI GWGCWC 1 cut(s) 41
BsiSI CCGG 2 cut(s) 348, 381
BslI CCNNNNNNNGG 2 cut(s) 97, 98
BsmAI GTCTC 1 cut(s) 72
BsnI GGCC 1 cut(s) 347
Bso31I GGTCTC 1 cut(s) 72
Bsp1286I GDGCHC 1 cut(s) 41
Bsp143I GATC 2 cut(s) 126, 417
BspANI GGCC 1 cut(s) 347
BspCNI CTCAG 2 cut(s) 479, 586
BspPI GGATC 2 cut(s) 134, 425
BspQI GCTCTTC 1 cut(s) 531
BspTNI GGTCTC 1 cut(s) 72
BsrFI RCCGGY 2 cut(s) 347, 380
BsrI ACTGG 1 cut(s) 58
BssAI RCCGGY 2 cut(s) 347, 380
BssECI CCNNGG 1 cut(s) 265
BssMI GATC 2 cut(s) 126, 417
BssNI GRCGYC 1 cut(s) 552
BssT1I CCWWGG 1 cut(s) 265
Bst4CI ACNGT 1 cut(s) 310
Bst6I CTCTTC 1 cut(s) 531
BstACI GRCGYC 1 cut(s) 552
BstC8I GCNNGC 1 cut(s) 41
BstDEI CTNAG 2 cut(s) 466, 573
BstF5I GGATG 1 cut(s) 419
BstKTI GATC 2 cut(s) 129, 420
BstMAI GTCTC 1 cut(s) 72
BstMBI GATC 2 cut(s) 126, 417
BstMCI CGRYCG 1 cut(s) 348
BstMWI GCNNNNNNNGC 1 cut(s) 530
BstSFI CTRYAG 1 cut(s) 202
BstX2I RGATCY 1 cut(s) 126
BstYI RGATCY 1 cut(s) 126
BstZI CGGCCG 1 cut(s) 345
BsuRI GGCC 1 cut(s) 347
BtsCI GGATG 1 cut(s) 419
BtsIMutI CAGTG 1 cut(s) 564
Cac8I GCNNGC 1 cut(s) 41
Cfr10I RCCGGY 2 cut(s) 347, 380
Csp6I GTAC 1 cut(s) 219
CviAII CATG 1 cut(s) 452
CviJI RGCY 6 cut(s) 90, 251, 347, 470, 524, 590
CviKI_1 RGCY 6 cut(s) 90, 251, 347, 470, 524, 590
CviQI GTAC 1 cut(s) 219
DdeI CTNAG 2 cut(s) 466, 573
DpnI GATC 2 cut(s) 128, 419
DpnII GATC 2 cut(s) 126, 417
EaeI YGGCCR 1 cut(s) 345
EagI CGGCCG 1 cut(s) 345
Eam1104I CTCTTC 1 cut(s) 531
EarI CTCTTC 1 cut(s) 531
EclXI CGGCCG 1 cut(s) 345
Eco130I CCWWGG 1 cut(s) 265
Eco31I GGTCTC 1 cut(s) 72
Eco32I GATATC 1 cut(s) 149
Eco52I CGGCCG 1 cut(s) 345
EcoRV GATATC 1 cut(s) 149
EcoT14I CCWWGG 1 cut(s) 265
EcoT22I ATGCAT 1 cut(s) 457
ErhI CCWWGG 1 cut(s) 265
FaeI CATG 1 cut(s) 455
FatI CATG 1 cut(s) 451
FauNDI CATATG 1 cut(s) 117
FblI GTMKAC 1 cut(s) 498
FokI GGATG 1 cut(s) 426
FspBI CTAG 2 cut(s) 266, 335
GsuI CTGGAG 1 cut(s) 267
HaeIII GGCC 1 cut(s) 347
HapII CCGG 2 cut(s) 348, 381
Hin1I GRCGYC 1 cut(s) 552
Hin1II CATG 1 cut(s) 455
HincII GTYRAC 1 cut(s) 499
HindII GTYRAC 1 cut(s) 499
HinfI GANTC 2 cut(s) 569, 577
HpaII CCGG 2 cut(s) 348, 381
HphI GGTGA 3 cut(s) 46, 47, 319
Hpy166II GTNNAC 4 cut(s) 63, 272, 340, 499
Hpy188I TCNGA 2 cut(s) 24, 576
Hpy188III TCNNGA 4 cut(s) 144, 246, 482, 595
Hpy8I GTNNAC 4 cut(s) 63, 272, 340, 499
Hpy99I CGWCG 1 cut(s) 585
HpyAV CCTTC 2 cut(s) 91, 425
HpyCH4III ACNGT 1 cut(s) 310
HpyCH4IV ACGT 2 cut(s) 174, 552
HpyCH4V TGCA 2 cut(s) 13, 455
HpyF10VI GCNNNNNNNGC 1 cut(s) 530
HpyF3I CTNAG 2 cut(s) 466, 573
HpySE526I ACGT 2 cut(s) 174, 552
Hsp92I GRCGYC 1 cut(s) 552
Hsp92II CATG 1 cut(s) 455
Kzo9I GATC 2 cut(s) 126, 417
LguI GCTCTTC 1 cut(s) 531
LmnI GCTCC 2 cut(s) 248, 299
LpnPI CCDG 8 cut(s) 71, 91, 231, 343, 361, 394, 401, 467
MaeI CTAG 2 cut(s) 266, 335
MaeII ACGT 2 cut(s) 174, 552
MaeIII GTNAC 1 cut(s) 350
MalI GATC 2 cut(s) 128, 419
MboI GATC 2 cut(s) 126, 417
MboII GAAGA 4 cut(s) 181, 199, 203, 518
MfeI CAATTG 1 cut(s) 400
MflI RGATCY 1 cut(s) 126
MhlI GDGCHC 1 cut(s) 41
MluCI AATT 2 cut(s) 237, 400
MmeI TCCRAC 1 cut(s) 104
MnlI CCTC 5 cut(s) 93, 155, 172, 297, 602
Mph1103I ATGCAT 1 cut(s) 457
MroXI GAANNNNTTC 1 cut(s) 101
MspI CCGG 2 cut(s) 348, 381
MunI CAATTG 1 cut(s) 400
MwoI GCNNNNNNNGC 1 cut(s) 530
NdeI CATATG 1 cut(s) 117
NdeII GATC 2 cut(s) 126, 417
NlaIII CATG 1 cut(s) 455
NmeAIII GCCGAG 1 cut(s) 323
NmuCI GTSAC 1 cut(s) 350
NsiI ATGCAT 1 cut(s) 457
PciSI GCTCTTC 1 cut(s) 531
PdmI GAANNNNTTC 1 cut(s) 101
PfeI GAWTC 2 cut(s) 569, 577
PflFI GACNNNGTC 1 cut(s) 477
Psp1406I AACGTT 1 cut(s) 174
PsuI RGATCY 1 cut(s) 126
PsyI GACNNNGTC 1 cut(s) 477
RsaI GTAC 1 cut(s) 220
RsaNI GTAC 1 cut(s) 219
SalI GTCGAC 1 cut(s) 497
SapI GCTCTTC 1 cut(s) 531
Sau3AI GATC 2 cut(s) 126, 417
SduI GDGCHC 1 cut(s) 41
SfcI CTRYAG 1 cut(s) 202
SgrAI CRCCGGYG 1 cut(s) 380
SmlI CTYRAG 1 cut(s) 593
SmoI CTYRAG 1 cut(s) 593
Sse9I AATT 2 cut(s) 237, 400
SspI AATATT 1 cut(s) 602
SspMI CTAG 2 cut(s) 266, 335
StyI CCWWGG 1 cut(s) 265
TaaI ACNGT 1 cut(s) 310
TaiI ACGT 2 cut(s) 177, 555
TaqI TCGA 3 cut(s) 145, 472, 498
TasI AATT 2 cut(s) 237, 400
TfiI GAWTC 2 cut(s) 569, 577
TscAI CASTG 1 cut(s) 571
TseFI GTSAC 1 cut(s) 350
Tsp45I GTSAC 1 cut(s) 350
TspDTI ATGAA 2 cut(s) 200, 203
TspRI CASTG 1 cut(s) 571
Tth111I GACNNNGTC 1 cut(s) 477
XmaJI CCTAGG 1 cut(s) 265
XmiI GTMKAC 1 cut(s) 498
XmnI GAANNNNTTC 1 cut(s) 101
XspI CTAG 2 cut(s) 266, 335
ZraI GACGTC 1 cut(s) 553
Zsp2I ATGCAT 1 cut(s) 457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.