Rmu_sc0004864.1_g000019

Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004864.1
Physical Location & Seq
Forward (+)
50451 .. 52604
2154 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004864.1_g000019.1.cds

Sequence Viewer

Length: 513 bp
atggcaaggctactttgggtggtgcagaagccggtatattttctggggaggcaatggaacggtgtcgacatagctagtgttttcacccttactgctatacatctccttgctcttctggctccattttacttcacttggtctgcattttggttggcggtagtactctattatgtcaccggtgtgggagtaactctatctttccatagaaatctcgcccacaaaagcttcaagcttcccaaatggctcgaatacttcttcgcctattgcgccgttcattcacttcagggaagtccacttgaatgggttagctcgcacaggagtcaccaccagtttacggacaccccgagcgaccctcatacccctcttaagggtttctggtttagtcacattggttggatctttgattttcgtaaacgatttggaagtgagattcgctacttgaatgcgaagaaattgggaattggggactggaattcgaagccatgtccttcgaattggaaattggggaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

170

Amino Acids

19.79

Weight (kDa)

9.83

Isoelectric Point (pI)

29.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000059)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06080 AT1G06080 AT2G31360 AT2G31360
fragaria_vesca FvH4_1g04480 FvH4_1g04480 FvH4_1g04480 FvH4_1g04480 FvH4_3g00350 FvH4_3g28040 FvH4_3g28040 FvH4_3g28040 FvH4_3g28050 FvH4_5g34260 FvH4_6g42131 FvH4_6g42140 FvH4_6g42171 FvH4_6g42171 FvH4_6g42171 FvH4_6g42171 FvH4_6g42171 FvH4_6g42311 FvH4_6g42312 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640
malus_domestica MD00G1098700.v1.1 MD00G1139800.v1.1 MD00G1174400.v1.1 MD02G1133600.v1.1 MD02G1271200.v1.1 MD09G1114000.v1.1 MD09G1114100.v1.1 MD09G1114200.v1.1 MD11G1194300.v1.1 MD15G1438800.v1.1 MD17G1105800.v1.1 MD17G1105900.v1.1
prunus_persica Prupe.3G210300_v2.0.a1 Prupe.3G210300_v2.0.a1 Prupe.3G210400_v2.0.a1 Prupe.3G210500_v2.0.a1 Prupe.3G210600_v2.0.a1 Prupe.3G210600_v2.0.a1 Prupe.4G228700_v2.0.a1 Prupe.4G228800_v2.0.a1 Prupe.4G228900_v2.0.a1 Prupe.4G229000_v2.0.a1 Prupe.4G229300_v2.0.a1 Prupe.4G229500_v2.0.a1 Prupe.4G229600_v2.0.a1 Prupe.4G259100_v2.0.a1 Prupe.4G259400_v2.0.a1 Prupe.4G259500_v2.0.a1 Prupe.4G259600_v2.0.a1 Prupe.4G259600_v2.0.a1 Prupe.4G259600_v2.0.a1 Prupe.4G259800_v2.0.a1 Prupe.4G259900_v2.0.a1
pyrus_communis pycom03g12440 pycom09g03830 pycom09g03840 pycom09g03850 pycom11g16300 pycom15g38680 pycom17g09850
rosa_chinensis RchiOBHm_Chr1g0337221 RchiOBHm_Chr1g0343481 RchiOBHm_Chr1g0343491 RchiOBHm_Chr1g0343531 RchiOBHm_Chr1g0343551 RchiOBHm_Chr1g0343711 RchiOBHm_Chr1g0343721 RchiOBHm_Chr1g0343731 RchiOBHm_Chr1g0360301 RchiOBHm_Chr2g0086981 RchiOBHm_Chr2g0142871 RchiOBHm_Chr2g0156531 RchiOBHm_Chr2g0157491 RchiOBHm_Chr2g0157791 RchiOBHm_Chr2g0158051 RchiOBHm_Chr2g0158061 RchiOBHm_Chr2g0158141 RchiOBHm_Chr2g0158151 RchiOBHm_Chr2g0158221 RchiOBHm_Chr2g0158251 RchiOBHm_Chr2g0159451 RchiOBHm_Chr4g0403611 RchiOBHm_Chr4g0412621 RchiOBHm_Chr4g0424961 RchiOBHm_Chr4g0425001 RchiOBHm_Chr4g0425091 RchiOBHm_Chr5g0012311 RchiOBHm_Chr5g0022121 RchiOBHm_Chr5g0050081 RchiOBHm_Chr5g0050721 RchiOBHm_Chr5g0050731 RchiOBHm_Chr5g0050761 RchiOBHm_Chr6g0252581 RchiOBHm_Chr7g0199141 RchiOBHm_Chr7g0216811 RchiOBHm_Chr7g0234331 RchiOBHm_Chr7g0234341 RchiOBHm_Chr7g0234371 RchiOBHm_Chr7g0234431 RchiOBHm_Chr7g0234681 RchiOBHm_Chr7g0234741
rosa_laevigata RLG00000001215 RLG00000001222 RLG00000001223 RLG00000001229 RLG00000003811 RLG00000007410 RLG00000015084 RLG00000017931 RLG00000020899 RLG00000020919 RLG00000020994 RLG00000021020 RLG00000021055 RLG00000021056 RLG00000021057 RLG00000021063 RLG00000021065 RLG00000021066 RLG00000021069 RLG00000021071 RLG00000021156 RLG00000024999 RLG00000025005 RLG00000028964 RLG00000029292 RLG00000032646 RLG00000034725 RLG00000034726 RLG00000034730
rosa_multiflora Rmu_co8371849.1_g000001 Rmu_co8422897.1_g000001 Rmu_sc0000195.1_g000039 Rmu_sc0000333.1_g000003 Rmu_sc0000419.1_g000030 Rmu_sc0000419.1_g000034 Rmu_sc0002016.1_g000040 Rmu_sc0002117.1_g000018 Rmu_sc0002117.1_g000023 Rmu_sc0002160.1_g000002 Rmu_sc0002204.1_g000008 Rmu_sc0002775.1_g000001 Rmu_sc0002775.1_g000013 Rmu_sc0002801.1_g000001 Rmu_sc0002801.1_g000013 Rmu_sc0004434.1_g000003 Rmu_sc0004864.1_g000019 Rmu_sc0006966.1_g000006 Rmu_sc0007763.1_g000002 Rmu_sc0007769.1_g000006 Rmu_sc0007769.1_g000013 Rmu_sc0008904.1_g000001 Rmu_sc0013250.1_g000001 Rmu_sc0013327.1_g000004 Rmu_sc0037251.1_g000001 Rmu_ssc0000217.1_g000013 Rmu_ssc0000420.1_g000014 Rmu_ssc0000420.1_g000016
rosa_roxburghii Rroxscaffold_1G00030000 Rroxscaffold_1G00030030 Rroxscaffold_1G00030060 Rroxscaffold_2G00090560 Rroxscaffold_2G00090580 Rroxscaffold_2G00091590 Rroxscaffold_2G00091630 Rroxscaffold_2G00091670 Rroxscaffold_2G00091700 Rroxscaffold_2G00091950 Rroxscaffold_2G00092160 Rroxscaffold_2G00132010 Rroxscaffold_3G00226740 Rroxscaffold_3G00226760 Rroxscaffold_5G00356990 Rroxscaffold_5G00367150 Rroxscaffold_5G00368290 Rroxscaffold_7G00212540
rosa_rugosa Rorug01G0132700.1 Rorug01G0132800.1 Rorug01G0132900.1 Rorug01G0133000.1 Rorug01G0133100.1 Rorug01G0133200.1 Rorug01G0167200 Rorug01G0471200 Rorug02G0461800 Rorug02G0463400 Rorug02G0463500 Rorug02G0463600 Rorug02G0463700 Rorug02G0463700 Rorug02G0463700 Rorug02G0465500 Rorug02G0465800 Rorug02G0465900.1 Rorug02G0466000 Rorug02G0466100 Rorug02G0466200 Rorug02G0466300 Rorug02G0466600 Rorug02G0475900 Rorug04G0200800 Rorug04G0201000 Rorug04G0201100 Rorug04G0384700 Rorug05G0000500 Rorug05G0257600 Rorug05G0257600 Rorug05G0263300 Rorug05G0263700 Rorug05G0537100 Rorug05G0579200 Rorug05G0579200 Rorug07G0155500 Rorug07G0163100 Rorug07G0283400 Rorug07G0284800 Rorug07G0285400
rosa_samantha Rh1AG184700 Rh1BG152200 Rh1DG184100 Rh2AG024000 Rh2AG525800 Rh2AG529100 Rh2AG531600 Rh2AG531800 Rh2AG532600 Rh2AG532700 Rh2AG542500 Rh2BG024600 Rh2BG540500 Rh2BG543000 Rh2BG546000 Rh2BG546100 Rh2BG546500 Rh2BG555700 Rh2CG024700 Rh2CG510500 Rh2CG513400 Rh2CG515800 Rh2CG515900 Rh2CG516300 Rh2CG516400 Rh2CG525100 Rh2CG525900 Rh2DG549000 Rh2DG551900 Rh2DG554300 Rh2DG554500 Rh2DG555100 Rh2DG564800 Rh2DG565100 Rh4AG174400 Rh4AG258000 Rh4BG263600 Rh4CG274800 Rh4DG170100 Rh4DG259200 Rh4DG259500 Rh5AG094500 Rh5AG159500 Rh5AG330300 Rh5AG335300 Rh5AG335400 Rh5AG335800 Rh5BG090700 Rh5BG159000 Rh5BG341000 Rh5BG344600 Rh5BG344800 Rh5BG345200 Rh5CG173200 Rh5CG372600 Rh5CG372700 Rh5CG373100 Rh5DG090200 Rh5DG159000 Rh5DG353800 Rh5DG357700 Rh5DG357900 Rh5DG358300 Rh6AG053400 Rh7AG176500 Rh7AG301900 Rh7AG439800 Rh7BG294700 Rh7BG412800 Rh7CG185600 Rh7CG320600 Rh7CG460400 Rh7CG460500 Rh7CG460900 Rh7CG461300 Rh7DG179500 Rh7DG303400 Rh7DG429500 Rh7DG429600
rosa_wichuraiana Rw0G019480 Rw1G012510 Rw1G015180 Rw2G001890 Rw2G043550 Rw2G043740 Rw2G043960 Rw2G043970 Rw2G044020 Rw2G044030 Rw2G044080 Rw2G044100 Rw2G044850 Rw2G044910 Rw4G014610 Rw4G022270 Rw4G022280 Rw4G022310 Rw5G008250 Rw5G014230 Rw5G031190 Rw5G031640 Rw5G031650 Rw5G031680 Rw6G004800 Rw7G015520 Rw7G025750 Rw7G036370 Rw7G036390 Rw7G036410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 66
AciI CCGC 1 cut(s) 155
AclWI GGATC 1 cut(s) 404
AcsI RAATTY 1 cut(s) 472
AcuI CTGAAG 1 cut(s) 266
AfaI GTAC 1 cut(s) 162
AfiI CCNNNNNNNGG 3 cut(s) 334, 367, 368
AflII CTTAAG 1 cut(s) 365
AgeI ACCGGT 1 cut(s) 176
AgsI TTSAA 3 cut(s) 229, 299, 442
AjuI GAANNNNNNNTTGG 1 cut(s) 485
AleI CACNNNNGTG 1 cut(s) 179
AluBI AGCT 4 cut(s) 74, 225, 232, 309
AluI AGCT 4 cut(s) 74, 225, 232, 309
AlwI GGATC 1 cut(s) 404
Ama87I CYCGRG 1 cut(s) 343
ApoI RAATTY 1 cut(s) 472
AsiGI ACCGGT 1 cut(s) 176
AspLEI GCGC 1 cut(s) 269
AsuHPI GGTGA 3 cut(s) 76, 166, 314
AsuII TTCGAA 2 cut(s) 476, 491
AvaI CYCGRG 1 cut(s) 343
BceAI ACGGC 1 cut(s) 254
BfaI CTAG 1 cut(s) 75
BfrI CTTAAG 1 cut(s) 365
BmcAI AGTACT 1 cut(s) 162
BmeT110I CYCGRG 1 cut(s) 343
BmiI GGNNCC 1 cut(s) 120
BplI GAGNNNNNCTC 2 cut(s) 337, 369
Bpu14I TTCGAA 2 cut(s) 476, 491
BsaWI WCCGGW 1 cut(s) 176
Bsc4I CCNNNNNNNGG 3 cut(s) 334, 367, 368
Bse118I RCCGGY 2 cut(s) 31, 176
Bse1I ACTGG 2 cut(s) 328, 473
Bse3DI GCAATG 1 cut(s) 59
BseLI CCNNNNNNNGG 3 cut(s) 334, 367, 368
BseMI GCAATG 1 cut(s) 59
BseNI ACTGG 2 cut(s) 328, 473
BsgI GTGCAG 1 cut(s) 44
BshTI ACCGGT 1 cut(s) 176
BsiHKCI CYCGRG 1 cut(s) 343
BsiSI CCGG 2 cut(s) 32, 177
BslFI GGGAC 1 cut(s) 479
BslI CCNNNNNNNGG 3 cut(s) 334, 367, 368
BsmFI GGGAC 1 cut(s) 479
BsmI GAATGC 1 cut(s) 448
BsoBI CYCGRG 1 cut(s) 343
Bsp119I TTCGAA 2 cut(s) 476, 491
Bsp143I GATC 1 cut(s) 396
BspACI CCGC 1 cut(s) 155
BspLI GGNNCC 1 cut(s) 120
BspPI GGATC 1 cut(s) 404
BspQI GCTCTTC 1 cut(s) 117
BspT104I TTCGAA 2 cut(s) 476, 491
BspTI CTTAAG 1 cut(s) 365
BsrDI GCAATG 1 cut(s) 59
BsrFI RCCGGY 2 cut(s) 31, 176
BsrI ACTGG 2 cut(s) 328, 473
BssAI RCCGGY 2 cut(s) 31, 176
BssMI GATC 1 cut(s) 396
Bst4CI ACNGT 1 cut(s) 62
Bst6I CTCTTC 1 cut(s) 117
BstAFI CTTAAG 1 cut(s) 365
BstBI TTCGAA 2 cut(s) 476, 491
BstC8I GCNNGC 1 cut(s) 311
BstHHI GCGC 1 cut(s) 269
BstKTI GATC 1 cut(s) 399
BstMBI GATC 1 cut(s) 396
BstMWI GCNNNNNNNGC 2 cut(s) 116, 266
BstX2I RGATCY 1 cut(s) 396
BstXI CCANNNNNNTGG 1 cut(s) 300
BstYI RGATCY 1 cut(s) 396
Cac8I GCNNGC 1 cut(s) 311
CfoI GCGC 1 cut(s) 269
Cfr10I RCCGGY 2 cut(s) 31, 176
Csp6I GTAC 1 cut(s) 161
CspAI ACCGGT 1 cut(s) 176
CviAII CATG 1 cut(s) 483
CviJI RGCY 9 cut(s) 10, 31, 74, 119, 225, 232, 244, 309, 481
CviKI_1 RGCY 9 cut(s) 10, 31, 74, 119, 225, 232, 244, 309, 481
CviQI GTAC 1 cut(s) 161
DpnI GATC 1 cut(s) 398
DpnII GATC 1 cut(s) 396
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
Eco57I CTGAAG 1 cut(s) 266
Eco88I CYCGRG 1 cut(s) 343
EcoRI GAATTC 1 cut(s) 472
FaeI CATG 1 cut(s) 486
FaiI YATR 7 cut(s) 37, 71, 98, 171, 204, 357, 484
FaqI GGGAC 1 cut(s) 479
FatI CATG 1 cut(s) 482
FblI GTMKAC 1 cut(s) 66
FspBI CTAG 1 cut(s) 75
GlaI GCGC 1 cut(s) 268
HapII CCGG 2 cut(s) 32, 177
HhaI GCGC 1 cut(s) 269
Hin1II CATG 1 cut(s) 486
Hin6I GCGC 1 cut(s) 267
HinP1I GCGC 1 cut(s) 267
HincII GTYRAC 1 cut(s) 67
HindII GTYRAC 1 cut(s) 67
HindIII AAGCTT 2 cut(s) 223, 230
HinfI GANTC 2 cut(s) 319, 430
HpaII CCGG 2 cut(s) 32, 177
HphI GGTGA 3 cut(s) 76, 166, 314
Hpy166II GTNNAC 4 cut(s) 67, 293, 333, 413
Hpy8I GTNNAC 4 cut(s) 67, 293, 333, 413
HpyAV CCTTC 1 cut(s) 498
HpyCH4III ACNGT 1 cut(s) 62
HpyCH4V TGCA 2 cut(s) 25, 143
HpyF10VI GCNNNNNNNGC 2 cut(s) 116, 266
Hsp92II CATG 1 cut(s) 486
HspAI GCGC 1 cut(s) 267
Kzo9I GATC 1 cut(s) 396
LguI GCTCTTC 1 cut(s) 117
LmnI GCTCC 1 cut(s) 124
LpnPI CCDG 9 cut(s) 29, 45, 101, 190, 269, 301, 341, 361, 454
MaeI CTAG 1 cut(s) 75
MaeIII GTNAC 4 cut(s) 172, 187, 320, 383
MalI GATC 1 cut(s) 398
MboI GATC 1 cut(s) 396
MboII GAAGA 3 cut(s) 104, 247, 460
MflI RGATCY 1 cut(s) 396
MluCI AATT 5 cut(s) 452, 459, 472, 493, 500
MlyI GAGTC 1 cut(s) 328
MmeI TCCRAC 1 cut(s) 374
MnlI CCTC 3 cut(s) 42, 363, 372
MseI TTAA 1 cut(s) 366
MslI CAYNNNNRTG 2 cut(s) 179, 298
MspCI CTTAAG 1 cut(s) 365
MspI CCGG 2 cut(s) 32, 177
Mva1269I GAATGC 1 cut(s) 448
MwoI GCNNNNNNNGC 2 cut(s) 116, 266
NdeII GATC 1 cut(s) 396
NlaIII CATG 1 cut(s) 486
NlaIV GGNNCC 1 cut(s) 120
NmuCI GTSAC 3 cut(s) 172, 320, 383
NspV TTCGAA 2 cut(s) 476, 491
OliI CACNNNNGTG 1 cut(s) 179
PciSI GCTCTTC 1 cut(s) 117
PcsI WCGNNNNNNNCGW 1 cut(s) 341
PctI GAATGC 1 cut(s) 448
PfeI GAWTC 1 cut(s) 430
PinAI ACCGGT 1 cut(s) 176
PleI GAGTC 1 cut(s) 327
PpsI GAGTC 1 cut(s) 327
PspN4I GGNNCC 1 cut(s) 120
PsuI RGATCY 1 cut(s) 396
RsaI GTAC 1 cut(s) 162
RsaNI GTAC 1 cut(s) 161
RseI CAYNNNNRTG 2 cut(s) 179, 298
SalI GTCGAC 1 cut(s) 65
SapI GCTCTTC 1 cut(s) 117
SaqAI TTAA 1 cut(s) 366
Sau3AI GATC 1 cut(s) 396
ScaI AGTACT 1 cut(s) 162
SchI GAGTC 1 cut(s) 328
SetI ASST 4 cut(s) 76, 227, 234, 311
SfuI TTCGAA 2 cut(s) 476, 491
SgrAI CRCCGGYG 1 cut(s) 176
SmiMI CAYNNNNRTG 2 cut(s) 179, 298
SmlI CTYRAG 1 cut(s) 365
SmoI CTYRAG 1 cut(s) 365
Sse9I AATT 5 cut(s) 452, 459, 472, 493, 500
SsiI CCGC 1 cut(s) 155
SspMI CTAG 1 cut(s) 75
TaaI ACNGT 1 cut(s) 62
TaqI TCGA 4 cut(s) 66, 246, 476, 491
TasI AATT 5 cut(s) 452, 459, 472, 493, 500
TatI WGTACW 1 cut(s) 160
TfiI GAWTC 1 cut(s) 430
Tru1I TTAA 1 cut(s) 366
Tru9I TTAA 1 cut(s) 366
TseFI GTSAC 3 cut(s) 172, 320, 383
Tsp45I GTSAC 3 cut(s) 172, 320, 383
TspDTI ATGAA 1 cut(s) 263
TspGWI ACGGA 1 cut(s) 350
Vha464I CTTAAG 1 cut(s) 365
XapI RAATTY 1 cut(s) 472
XmiI GTMKAC 1 cut(s) 66
XspI CTAG 1 cut(s) 75
ZrmI AGTACT 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.