Rorug02G0465800

Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
59711831 .. 59712728
898 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0465800.1

Sequence Viewer

Length: 585 bp
ATGCACAAGATGGCTAAGTCCTATGTAGTTGCCAAAGTCCCTTCTGTAGTTTCCAAGTTACTACTATTGGGTATCCTCATGGCAACCTTTACCACAACAGGTGCCCAGATTGGTGTTTGTCATGGAAATGTCGAAAACGAACGCCTTCAGGATATTTCTTCTAACCAAGCCAGTGCCGATGATTGGGTCCAAAAAAATGTTGTAACCTATGGAAACGTCGATTTCAAATACATTGCGGTTGGAAATGAAATAGATGCTACAGGTCCTTTAGCACCATTTGTTGGCCCTGCCATGGAAAAAATTCAAAATGCAATTTCGAAAGCTGGTCTTGCTAATAAAATTAAAGTCTTCTCGGCAGTTCATGCTCTAATCCTCCAAGAATCCTCCGCTCCATCAATAGGACCATTCAGGCCGAATTACCGACCCTTTCTTGATCCTATCATCAGTTTCCTTGTGGGAAAGCAGTCTCCGTTGCTTCATAATACTTACCCATACTTTAGTTACATTGACAACAGAGCAATTAACCTTCAGTATGCTCTTCTAGTTTATCACATGGTGTCTGGTTTTGTTCTTCTTCTCTTCTAG

Protein Analysis

194

Amino Acids

21.25

Weight (kDa)

8.93

Isoelectric Point (pI)

39.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 43 - 184 8.6e-35 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000059)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06080 AT1G06080 AT2G31360 AT2G31360
fragaria_vesca FvH4_1g04480 FvH4_1g04480 FvH4_1g04480 FvH4_1g04480 FvH4_3g00350 FvH4_3g28040 FvH4_3g28040 FvH4_3g28040 FvH4_3g28050 FvH4_5g34260 FvH4_6g42131 FvH4_6g42140 FvH4_6g42171 FvH4_6g42171 FvH4_6g42171 FvH4_6g42171 FvH4_6g42171 FvH4_6g42311 FvH4_6g42312 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640
malus_domestica MD00G1098700.v1.1 MD00G1139800.v1.1 MD00G1174400.v1.1 MD02G1133600.v1.1 MD02G1271200.v1.1 MD09G1114000.v1.1 MD09G1114100.v1.1 MD09G1114200.v1.1 MD11G1194300.v1.1 MD15G1438800.v1.1 MD17G1105800.v1.1 MD17G1105900.v1.1
prunus_persica Prupe.3G210300_v2.0.a1 Prupe.3G210300_v2.0.a1 Prupe.3G210400_v2.0.a1 Prupe.3G210500_v2.0.a1 Prupe.3G210600_v2.0.a1 Prupe.3G210600_v2.0.a1 Prupe.4G228700_v2.0.a1 Prupe.4G228800_v2.0.a1 Prupe.4G228900_v2.0.a1 Prupe.4G229000_v2.0.a1 Prupe.4G229300_v2.0.a1 Prupe.4G229500_v2.0.a1 Prupe.4G229600_v2.0.a1 Prupe.4G259100_v2.0.a1 Prupe.4G259400_v2.0.a1 Prupe.4G259500_v2.0.a1 Prupe.4G259600_v2.0.a1 Prupe.4G259600_v2.0.a1 Prupe.4G259600_v2.0.a1 Prupe.4G259800_v2.0.a1 Prupe.4G259900_v2.0.a1
pyrus_communis pycom03g12440 pycom09g03830 pycom09g03840 pycom09g03850 pycom11g16300 pycom15g38680 pycom17g09850
rosa_chinensis RchiOBHm_Chr1g0337221 RchiOBHm_Chr1g0343481 RchiOBHm_Chr1g0343491 RchiOBHm_Chr1g0343531 RchiOBHm_Chr1g0343551 RchiOBHm_Chr1g0343711 RchiOBHm_Chr1g0343721 RchiOBHm_Chr1g0343731 RchiOBHm_Chr1g0360301 RchiOBHm_Chr2g0086981 RchiOBHm_Chr2g0142871 RchiOBHm_Chr2g0156531 RchiOBHm_Chr2g0157491 RchiOBHm_Chr2g0157791 RchiOBHm_Chr2g0158051 RchiOBHm_Chr2g0158061 RchiOBHm_Chr2g0158141 RchiOBHm_Chr2g0158151 RchiOBHm_Chr2g0158221 RchiOBHm_Chr2g0158251 RchiOBHm_Chr2g0159451 RchiOBHm_Chr4g0403611 RchiOBHm_Chr4g0412621 RchiOBHm_Chr4g0424961 RchiOBHm_Chr4g0425001 RchiOBHm_Chr4g0425091 RchiOBHm_Chr5g0012311 RchiOBHm_Chr5g0022121 RchiOBHm_Chr5g0050081 RchiOBHm_Chr5g0050721 RchiOBHm_Chr5g0050731 RchiOBHm_Chr5g0050761 RchiOBHm_Chr6g0252581 RchiOBHm_Chr7g0199141 RchiOBHm_Chr7g0216811 RchiOBHm_Chr7g0234331 RchiOBHm_Chr7g0234341 RchiOBHm_Chr7g0234371 RchiOBHm_Chr7g0234431 RchiOBHm_Chr7g0234681 RchiOBHm_Chr7g0234741
rosa_laevigata RLG00000001215 RLG00000001222 RLG00000001223 RLG00000001229 RLG00000003811 RLG00000007410 RLG00000015084 RLG00000017931 RLG00000020899 RLG00000020919 RLG00000020994 RLG00000021020 RLG00000021055 RLG00000021056 RLG00000021057 RLG00000021063 RLG00000021065 RLG00000021066 RLG00000021069 RLG00000021071 RLG00000021156 RLG00000024999 RLG00000025005 RLG00000028964 RLG00000029292 RLG00000032646 RLG00000034725 RLG00000034726 RLG00000034730
rosa_multiflora Rmu_co8371849.1_g000001 Rmu_co8422897.1_g000001 Rmu_sc0000195.1_g000039 Rmu_sc0000333.1_g000003 Rmu_sc0000419.1_g000030 Rmu_sc0000419.1_g000034 Rmu_sc0002016.1_g000040 Rmu_sc0002117.1_g000018 Rmu_sc0002117.1_g000023 Rmu_sc0002160.1_g000002 Rmu_sc0002204.1_g000008 Rmu_sc0002775.1_g000001 Rmu_sc0002775.1_g000013 Rmu_sc0002801.1_g000001 Rmu_sc0002801.1_g000013 Rmu_sc0004434.1_g000003 Rmu_sc0004864.1_g000019 Rmu_sc0006966.1_g000006 Rmu_sc0007763.1_g000002 Rmu_sc0007769.1_g000006 Rmu_sc0007769.1_g000013 Rmu_sc0008904.1_g000001 Rmu_sc0013250.1_g000001 Rmu_sc0013327.1_g000004 Rmu_sc0037251.1_g000001 Rmu_ssc0000217.1_g000013 Rmu_ssc0000420.1_g000014 Rmu_ssc0000420.1_g000016
rosa_roxburghii Rroxscaffold_1G00030000 Rroxscaffold_1G00030030 Rroxscaffold_1G00030060 Rroxscaffold_2G00090560 Rroxscaffold_2G00090580 Rroxscaffold_2G00091590 Rroxscaffold_2G00091630 Rroxscaffold_2G00091670 Rroxscaffold_2G00091700 Rroxscaffold_2G00091950 Rroxscaffold_2G00092160 Rroxscaffold_2G00132010 Rroxscaffold_3G00226740 Rroxscaffold_3G00226760 Rroxscaffold_5G00356990 Rroxscaffold_5G00367150 Rroxscaffold_5G00368290 Rroxscaffold_7G00212540
rosa_rugosa Rorug01G0132700.1 Rorug01G0132800.1 Rorug01G0132900.1 Rorug01G0133000.1 Rorug01G0133100.1 Rorug01G0133200.1 Rorug01G0167200 Rorug01G0471200 Rorug02G0461800 Rorug02G0463400 Rorug02G0463500 Rorug02G0463600 Rorug02G0463700 Rorug02G0463700 Rorug02G0463700 Rorug02G0465500 Rorug02G0465800 Rorug02G0465900.1 Rorug02G0466000 Rorug02G0466100 Rorug02G0466200 Rorug02G0466300 Rorug02G0466600 Rorug02G0475900 Rorug04G0200800 Rorug04G0201000 Rorug04G0201100 Rorug04G0384700 Rorug05G0000500 Rorug05G0257600 Rorug05G0257600 Rorug05G0263300 Rorug05G0263700 Rorug05G0537100 Rorug05G0579200 Rorug05G0579200 Rorug07G0155500 Rorug07G0163100 Rorug07G0283400 Rorug07G0284800 Rorug07G0285400
rosa_samantha Rh1AG184700 Rh1BG152200 Rh1DG184100 Rh2AG024000 Rh2AG525800 Rh2AG529100 Rh2AG531600 Rh2AG531800 Rh2AG532600 Rh2AG532700 Rh2AG542500 Rh2BG024600 Rh2BG540500 Rh2BG543000 Rh2BG546000 Rh2BG546100 Rh2BG546500 Rh2BG555700 Rh2CG024700 Rh2CG510500 Rh2CG513400 Rh2CG515800 Rh2CG515900 Rh2CG516300 Rh2CG516400 Rh2CG525100 Rh2CG525900 Rh2DG549000 Rh2DG551900 Rh2DG554300 Rh2DG554500 Rh2DG555100 Rh2DG564800 Rh2DG565100 Rh4AG174400 Rh4AG258000 Rh4BG263600 Rh4CG274800 Rh4DG170100 Rh4DG259200 Rh4DG259500 Rh5AG094500 Rh5AG159500 Rh5AG330300 Rh5AG335300 Rh5AG335400 Rh5AG335800 Rh5BG090700 Rh5BG159000 Rh5BG341000 Rh5BG344600 Rh5BG344800 Rh5BG345200 Rh5CG173200 Rh5CG372600 Rh5CG372700 Rh5CG373100 Rh5DG090200 Rh5DG159000 Rh5DG353800 Rh5DG357700 Rh5DG357900 Rh5DG358300 Rh6AG053400 Rh7AG176500 Rh7AG301900 Rh7AG439800 Rh7BG294700 Rh7BG412800 Rh7CG185600 Rh7CG320600 Rh7CG460400 Rh7CG460500 Rh7CG460900 Rh7CG461300 Rh7DG179500 Rh7DG303400 Rh7DG429500 Rh7DG429600
rosa_wichuraiana Rw0G019480 Rw1G012510 Rw1G015180 Rw2G001890 Rw2G043550 Rw2G043740 Rw2G043960 Rw2G043970 Rw2G044020 Rw2G044030 Rw2G044080 Rw2G044100 Rw2G044850 Rw2G044910 Rw4G014610 Rw4G022270 Rw4G022280 Rw4G022310 Rw5G008250 Rw5G014230 Rw5G031190 Rw5G031640 Rw5G031650 Rw5G031680 Rw6G004800 Rw7G015520 Rw7G025750 Rw7G036370 Rw7G036390 Rw7G036410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 101
AccB7I CCANNNNNTGG 1 cut(s) 281
AccBSI CCGCTC 1 cut(s) 389
AciI CCGC 2 cut(s) 236, 387
AclWI GGATC 1 cut(s) 428
AcsI RAATTY 1 cut(s) 300
AcuI CTGAAG 2 cut(s) 131, 512
AdeI CACNNNGTG 1 cut(s) 556
AfiI CCNNNNNNNGG 4 cut(s) 183, 281, 292, 398
AgsI TTSAA 2 cut(s) 226, 305
AluBI AGCT 1 cut(s) 323
AluI AGCT 1 cut(s) 323
Alw26I GTCTC 1 cut(s) 471
AlwI GGATC 1 cut(s) 428
AoxI GGCC 2 cut(s) 283, 410
ApoI RAATTY 1 cut(s) 300
Asp700I GAANNNNTTC 2 cut(s) 144, 300
AspS9I GGNCC 4 cut(s) 187, 263, 284, 401
AsuII TTCGAA 1 cut(s) 317
AvaII GGWCC 3 cut(s) 187, 263, 401
BaeGI GKGCMC 1 cut(s) 106
BanI GGYRCC 1 cut(s) 101
BbsI GAAGAC 1 cut(s) 340
BccI CCATC 2 cut(s) 4, 400
BciVI GTATCC 1 cut(s) 83
BcoDI GTCTC 1 cut(s) 471
BfaI CTAG 2 cut(s) 542, 583
BfmI CTRYAG 2 cut(s) 45, 258
BfuI GTATCC 1 cut(s) 83
Bme18I GGWCC 3 cut(s) 187, 263, 401
BmgT120I GGNCC 4 cut(s) 187, 263, 284, 401
BmiI GGNNCC 2 cut(s) 103, 188
BmsI GCATC 1 cut(s) 244
BpiI GAAGAC 1 cut(s) 340
Bpu14I TTCGAA 1 cut(s) 317
BsaJI CCNNGG 1 cut(s) 291
Bsc4I CCNNNNNNNGG 4 cut(s) 183, 281, 292, 398
Bse1I ACTGG 1 cut(s) 171
Bse3DI GCAATG 1 cut(s) 231
BseDI CCNNGG 1 cut(s) 291
BseLI CCNNNNNNNGG 4 cut(s) 183, 281, 292, 398
BseMI GCAATG 1 cut(s) 231
BseNI ACTGG 1 cut(s) 171
BseSI GKGCMC 1 cut(s) 106
BshFI GGCC 2 cut(s) 285, 412
BshNI GGYRCC 1 cut(s) 101
BslFI GGGAC 1 cut(s) 23
BslI CCNNNNNNNGG 4 cut(s) 183, 281, 292, 398
BsmAI GTCTC 1 cut(s) 471
BsmFI GGGAC 1 cut(s) 23
BsnI GGCC 2 cut(s) 285, 412
Bsp119I TTCGAA 1 cut(s) 317
Bsp1286I GDGCHC 1 cut(s) 106
Bsp143I GATC 1 cut(s) 433
Bsp19I CCATGG 1 cut(s) 291
BspACI CCGC 2 cut(s) 236, 387
BspANI GGCC 2 cut(s) 285, 412
BspLI GGNNCC 2 cut(s) 103, 188
BspPI GGATC 1 cut(s) 428
BspQI GCTCTTC 1 cut(s) 543
BspT104I TTCGAA 1 cut(s) 317
BspT107I GGYRCC 1 cut(s) 101
BsrBI CCGCTC 1 cut(s) 389
BsrDI GCAATG 1 cut(s) 231
BsrI ACTGG 1 cut(s) 171
BssECI CCNNGG 1 cut(s) 291
BssMI GATC 1 cut(s) 433
BssT1I CCWWGG 1 cut(s) 291
Bst6I CTCTTC 1 cut(s) 543
BstAPI GCANNNNNTGC 1 cut(s) 362
BstBI TTCGAA 1 cut(s) 317
BstDEI CTNAG 1 cut(s) 15
BstDSI CCRYGG 1 cut(s) 291
BstKTI GATC 1 cut(s) 436
BstMAI GTCTC 1 cut(s) 471
BstMBI GATC 1 cut(s) 433
BstMWI GCNNNNNNNGC 2 cut(s) 329, 362
BstSFI CTRYAG 2 cut(s) 45, 258
BstSLI GKGCMC 1 cut(s) 106
BstV2I GAAGAC 1 cut(s) 340
BsuI GTATCC 1 cut(s) 83
BsuRI GGCC 2 cut(s) 285, 412
BtgI CCRYGG 1 cut(s) 291
BtsIMutI CAGTG 1 cut(s) 178
Cfr13I GGNCC 4 cut(s) 187, 263, 284, 401
CviAII CATG 5 cut(s) 79, 122, 292, 362, 553
CviJI RGCY 5 cut(s) 14, 170, 285, 323, 412
CviKI_1 RGCY 5 cut(s) 14, 170, 285, 323, 412
DdeI CTNAG 1 cut(s) 15
DpnI GATC 1 cut(s) 435
DpnII GATC 1 cut(s) 433
DraIII CACNNNGTG 1 cut(s) 556
Eam1104I CTCTTC 1 cut(s) 543
EarI CTCTTC 1 cut(s) 543
Eco130I CCWWGG 1 cut(s) 291
Eco47I GGWCC 3 cut(s) 187, 263, 401
Eco57I CTGAAG 2 cut(s) 131, 512
EcoO109I RGGNCCY 1 cut(s) 263
EcoT14I CCWWGG 1 cut(s) 291
ErhI CCWWGG 1 cut(s) 291
FaeI CATG 5 cut(s) 82, 125, 295, 365, 556
FalI AAGNNNNNCTT 2 cut(s) 312, 344
FaqI GGGAC 1 cut(s) 23
FatI CATG 5 cut(s) 78, 121, 291, 361, 552
FspBI CTAG 2 cut(s) 542, 583
HaeIII GGCC 2 cut(s) 285, 412
Hin1II CATG 5 cut(s) 82, 125, 295, 365, 556
HinfI GANTC 1 cut(s) 380
Hpy188III TCNNGA 2 cut(s) 149, 431
Hpy99I CGWCG 1 cut(s) 221
HpyAV CCTTC 3 cut(s) 51, 155, 536
HpyCH4IV ACGT 1 cut(s) 216
HpyCH4V TGCA 2 cut(s) 4, 311
HpyF10VI GCNNNNNNNGC 2 cut(s) 329, 362
HpyF3I CTNAG 1 cut(s) 15
HpySE526I ACGT 1 cut(s) 216
Hsp92II CATG 5 cut(s) 82, 125, 295, 365, 556
Kzo9I GATC 1 cut(s) 433
LguI GCTCTTC 1 cut(s) 543
LmnI GCTCC 1 cut(s) 394
LpnPI CCDG 9 cut(s) 84, 119, 134, 184, 246, 300, 309, 394, 546
LweI GCATC 1 cut(s) 244
MaeI CTAG 2 cut(s) 542, 583
MaeII ACGT 1 cut(s) 216
MaeIII GTNAC 3 cut(s) 57, 202, 500
MalI GATC 1 cut(s) 435
MbiI CCGCTC 1 cut(s) 389
MboI GATC 1 cut(s) 433
MboII GAAGA 6 cut(s) 150, 340, 530, 563, 566, 571
MhlI GDGCHC 1 cut(s) 106
MluCI AATT 5 cut(s) 300, 312, 339, 415, 519
MmeI TCCRAC 1 cut(s) 220
MnlI CCTC 3 cut(s) 86, 383, 394
MroXI GAANNNNTTC 2 cut(s) 144, 300
MseI TTAA 2 cut(s) 342, 522
MslI CAYNNNNRTG 1 cut(s) 126
MwoI GCNNNNNNNGC 2 cut(s) 329, 362
NcoI CCATGG 1 cut(s) 291
NdeII GATC 1 cut(s) 433
NlaIII CATG 5 cut(s) 82, 125, 295, 365, 556
NlaIV GGNNCC 2 cut(s) 103, 188
NmeAIII GCCGAG 1 cut(s) 332
NspV TTCGAA 1 cut(s) 317
PciSI GCTCTTC 1 cut(s) 543
PdmI GAANNNNTTC 2 cut(s) 144, 300
PfeI GAWTC 1 cut(s) 380
PflMI CCANNNNNTGG 1 cut(s) 281
PpuMI RGGWCCY 1 cut(s) 263
Psp5II RGGWCCY 1 cut(s) 263
PspN4I GGNNCC 2 cut(s) 103, 188
PspPI GGNCC 4 cut(s) 187, 263, 284, 401
PspPPI RGGWCCY 1 cut(s) 263
RseI CAYNNNNRTG 1 cut(s) 126
SapI GCTCTTC 1 cut(s) 543
SaqAI TTAA 2 cut(s) 342, 522
Sau3AI GATC 1 cut(s) 433
Sau96I GGNCC 4 cut(s) 187, 263, 284, 401
SduI GDGCHC 1 cut(s) 106
SetI ASST 7 cut(s) 89, 103, 209, 219, 265, 325, 528
SfaNI GCATC 1 cut(s) 244
SfcI CTRYAG 2 cut(s) 45, 258
SfuI TTCGAA 1 cut(s) 317
SinI GGWCC 3 cut(s) 187, 263, 401
SmiMI CAYNNNNRTG 1 cut(s) 126
Sse9I AATT 5 cut(s) 300, 312, 339, 415, 519
SsiI CCGC 2 cut(s) 236, 387
SspMI CTAG 2 cut(s) 542, 583
StyI CCWWGG 1 cut(s) 291
TaiI ACGT 1 cut(s) 219
TaqI TCGA 3 cut(s) 132, 219, 317
TasI AATT 5 cut(s) 300, 312, 339, 415, 519
TfiI GAWTC 1 cut(s) 380
Tru1I TTAA 2 cut(s) 342, 522
Tru9I TTAA 2 cut(s) 342, 522
TscAI CASTG 1 cut(s) 178
TspDTI ATGAA 3 cut(s) 261, 350, 467
TspGWI ACGGA 1 cut(s) 459
TspRI CASTG 1 cut(s) 178
Van91I CCANNNNNTGG 1 cut(s) 281
VpaK11BI GGWCC 3 cut(s) 187, 263, 401
XapI RAATTY 1 cut(s) 300
XmnI GAANNNNTTC 2 cut(s) 144, 300
XspI CTAG 2 cut(s) 542, 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.