Rroxscaffold_2G00091670

Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
13195977 .. 13197987
2011 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00091670.1

Sequence Viewer

Length: 672 bp
ATGCTTGATTGGGATCGTTGGCTGGTGAAATGGCGAGTGGAGTTTTGCGGGAGGGAATGGAACTTTGTGGACATAGCCACTTTCAGTAGCCTCGTCTTTTTGCACTTCCTTTCTCTTCTTGCGCCGTTTTACTTCACCTGGACTGCGTTTTGGTTGGCCATTGCACTCTACTTTGTCTCAGGTGTCGGCGTCACCCTATCGTTTCATAGGAATCTCTCACACAGAAGCTTCAAGCTTCCCAGATGGCTCGAGTACTTCTTTGCCTATTGTGGGGTTCTATCACTTCAGAGAAGTCCACTTGATTGGGGAGTGAGGACGGTACTTTTTCTCCATGTTACATTTGGATTAAATTCAATTTGCCATACATGGGGACAACAAGTATGGGAAACTGGTGATTTATCTAGAAACAACTGGTTGCTTGGATTGCTGGCACATGGAGAAGGTTGGCATAACAATCACCATGCTTTTCAGCACTCTGCTCGACACGGCTTGGAATGGTGGCAAATTGATGTTACTTGGTATGTCATAAGATTTCTTGAACTTGTGGGTTTGGCAACAGAAGTGAAGCTTCCAACTGAGACTCAGAAGAAACAAAGAGCTTTAAGAAACAAGATGATCCACGAGGAAAAGCAGCAGCAGCTTGAAGCAAAAGTCCAAAATGGCAACCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

223

Amino Acids

26.48

Weight (kDa)

8.83

Isoelectric Point (pI)

35.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000059)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06080 AT1G06080 AT2G31360 AT2G31360
fragaria_vesca FvH4_1g04480 FvH4_1g04480 FvH4_1g04480 FvH4_1g04480 FvH4_3g00350 FvH4_3g28040 FvH4_3g28040 FvH4_3g28040 FvH4_3g28050 FvH4_5g34260 FvH4_6g42131 FvH4_6g42140 FvH4_6g42171 FvH4_6g42171 FvH4_6g42171 FvH4_6g42171 FvH4_6g42171 FvH4_6g42311 FvH4_6g42312 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640
malus_domestica MD00G1098700.v1.1 MD00G1139800.v1.1 MD00G1174400.v1.1 MD02G1133600.v1.1 MD02G1271200.v1.1 MD09G1114000.v1.1 MD09G1114100.v1.1 MD09G1114200.v1.1 MD11G1194300.v1.1 MD15G1438800.v1.1 MD17G1105800.v1.1 MD17G1105900.v1.1
prunus_persica Prupe.3G210300_v2.0.a1 Prupe.3G210300_v2.0.a1 Prupe.3G210400_v2.0.a1 Prupe.3G210500_v2.0.a1 Prupe.3G210600_v2.0.a1 Prupe.3G210600_v2.0.a1 Prupe.4G228700_v2.0.a1 Prupe.4G228800_v2.0.a1 Prupe.4G228900_v2.0.a1 Prupe.4G229000_v2.0.a1 Prupe.4G229300_v2.0.a1 Prupe.4G229500_v2.0.a1 Prupe.4G229600_v2.0.a1 Prupe.4G259100_v2.0.a1 Prupe.4G259400_v2.0.a1 Prupe.4G259500_v2.0.a1 Prupe.4G259600_v2.0.a1 Prupe.4G259600_v2.0.a1 Prupe.4G259600_v2.0.a1 Prupe.4G259800_v2.0.a1 Prupe.4G259900_v2.0.a1
pyrus_communis pycom03g12440 pycom09g03830 pycom09g03840 pycom09g03850 pycom11g16300 pycom15g38680 pycom17g09850
rosa_chinensis RchiOBHm_Chr1g0337221 RchiOBHm_Chr1g0343481 RchiOBHm_Chr1g0343491 RchiOBHm_Chr1g0343531 RchiOBHm_Chr1g0343551 RchiOBHm_Chr1g0343711 RchiOBHm_Chr1g0343721 RchiOBHm_Chr1g0343731 RchiOBHm_Chr1g0360301 RchiOBHm_Chr2g0086981 RchiOBHm_Chr2g0142871 RchiOBHm_Chr2g0156531 RchiOBHm_Chr2g0157491 RchiOBHm_Chr2g0157791 RchiOBHm_Chr2g0158051 RchiOBHm_Chr2g0158061 RchiOBHm_Chr2g0158141 RchiOBHm_Chr2g0158151 RchiOBHm_Chr2g0158221 RchiOBHm_Chr2g0158251 RchiOBHm_Chr2g0159451 RchiOBHm_Chr4g0403611 RchiOBHm_Chr4g0412621 RchiOBHm_Chr4g0424961 RchiOBHm_Chr4g0425001 RchiOBHm_Chr4g0425091 RchiOBHm_Chr5g0012311 RchiOBHm_Chr5g0022121 RchiOBHm_Chr5g0050081 RchiOBHm_Chr5g0050721 RchiOBHm_Chr5g0050731 RchiOBHm_Chr5g0050761 RchiOBHm_Chr6g0252581 RchiOBHm_Chr7g0199141 RchiOBHm_Chr7g0216811 RchiOBHm_Chr7g0234331 RchiOBHm_Chr7g0234341 RchiOBHm_Chr7g0234371 RchiOBHm_Chr7g0234431 RchiOBHm_Chr7g0234681 RchiOBHm_Chr7g0234741
rosa_laevigata RLG00000001215 RLG00000001222 RLG00000001223 RLG00000001229 RLG00000003811 RLG00000007410 RLG00000015084 RLG00000017931 RLG00000020899 RLG00000020919 RLG00000020994 RLG00000021020 RLG00000021055 RLG00000021056 RLG00000021057 RLG00000021063 RLG00000021065 RLG00000021066 RLG00000021069 RLG00000021071 RLG00000021156 RLG00000024999 RLG00000025005 RLG00000028964 RLG00000029292 RLG00000032646 RLG00000034725 RLG00000034726 RLG00000034730
rosa_multiflora Rmu_co8371849.1_g000001 Rmu_co8422897.1_g000001 Rmu_sc0000195.1_g000039 Rmu_sc0000333.1_g000003 Rmu_sc0000419.1_g000030 Rmu_sc0000419.1_g000034 Rmu_sc0002016.1_g000040 Rmu_sc0002117.1_g000018 Rmu_sc0002117.1_g000023 Rmu_sc0002160.1_g000002 Rmu_sc0002204.1_g000008 Rmu_sc0002775.1_g000001 Rmu_sc0002775.1_g000013 Rmu_sc0002801.1_g000001 Rmu_sc0002801.1_g000013 Rmu_sc0004434.1_g000003 Rmu_sc0004864.1_g000019 Rmu_sc0006966.1_g000006 Rmu_sc0007763.1_g000002 Rmu_sc0007769.1_g000006 Rmu_sc0007769.1_g000013 Rmu_sc0008904.1_g000001 Rmu_sc0013250.1_g000001 Rmu_sc0013327.1_g000004 Rmu_sc0037251.1_g000001 Rmu_ssc0000217.1_g000013 Rmu_ssc0000420.1_g000014 Rmu_ssc0000420.1_g000016
rosa_roxburghii Rroxscaffold_1G00030000 Rroxscaffold_1G00030030 Rroxscaffold_1G00030060 Rroxscaffold_2G00090560 Rroxscaffold_2G00090580 Rroxscaffold_2G00091590 Rroxscaffold_2G00091630 Rroxscaffold_2G00091670 Rroxscaffold_2G00091700 Rroxscaffold_2G00091950 Rroxscaffold_2G00092160 Rroxscaffold_2G00132010 Rroxscaffold_3G00226740 Rroxscaffold_3G00226760 Rroxscaffold_5G00356990 Rroxscaffold_5G00367150 Rroxscaffold_5G00368290 Rroxscaffold_7G00212540
rosa_rugosa Rorug01G0132700.1 Rorug01G0132800.1 Rorug01G0132900.1 Rorug01G0133000.1 Rorug01G0133100.1 Rorug01G0133200.1 Rorug01G0167200 Rorug01G0471200 Rorug02G0461800 Rorug02G0463400 Rorug02G0463500 Rorug02G0463600 Rorug02G0463700 Rorug02G0463700 Rorug02G0463700 Rorug02G0465500 Rorug02G0465800 Rorug02G0465900.1 Rorug02G0466000 Rorug02G0466100 Rorug02G0466200 Rorug02G0466300 Rorug02G0466600 Rorug02G0475900 Rorug04G0200800 Rorug04G0201000 Rorug04G0201100 Rorug04G0384700 Rorug05G0000500 Rorug05G0257600 Rorug05G0257600 Rorug05G0263300 Rorug05G0263700 Rorug05G0537100 Rorug05G0579200 Rorug05G0579200 Rorug07G0155500 Rorug07G0163100 Rorug07G0283400 Rorug07G0284800 Rorug07G0285400
rosa_samantha Rh1AG184700 Rh1BG152200 Rh1DG184100 Rh2AG024000 Rh2AG525800 Rh2AG529100 Rh2AG531600 Rh2AG531800 Rh2AG532600 Rh2AG532700 Rh2AG542500 Rh2BG024600 Rh2BG540500 Rh2BG543000 Rh2BG546000 Rh2BG546100 Rh2BG546500 Rh2BG555700 Rh2CG024700 Rh2CG510500 Rh2CG513400 Rh2CG515800 Rh2CG515900 Rh2CG516300 Rh2CG516400 Rh2CG525100 Rh2CG525900 Rh2DG549000 Rh2DG551900 Rh2DG554300 Rh2DG554500 Rh2DG555100 Rh2DG564800 Rh2DG565100 Rh4AG174400 Rh4AG258000 Rh4BG263600 Rh4CG274800 Rh4DG170100 Rh4DG259200 Rh4DG259500 Rh5AG094500 Rh5AG159500 Rh5AG330300 Rh5AG335300 Rh5AG335400 Rh5AG335800 Rh5BG090700 Rh5BG159000 Rh5BG341000 Rh5BG344600 Rh5BG344800 Rh5BG345200 Rh5CG173200 Rh5CG372600 Rh5CG372700 Rh5CG373100 Rh5DG090200 Rh5DG159000 Rh5DG353800 Rh5DG357700 Rh5DG357900 Rh5DG358300 Rh6AG053400 Rh7AG176500 Rh7AG301900 Rh7AG439800 Rh7BG294700 Rh7BG412800 Rh7CG185600 Rh7CG320600 Rh7CG460400 Rh7CG460500 Rh7CG460900 Rh7CG461300 Rh7DG179500 Rh7DG303400 Rh7DG429500 Rh7DG429600
rosa_wichuraiana Rw0G019480 Rw1G012510 Rw1G015180 Rw2G001890 Rw2G043550 Rw2G043740 Rw2G043960 Rw2G043970 Rw2G044020 Rw2G044030 Rw2G044080 Rw2G044100 Rw2G044850 Rw2G044910 Rw4G014610 Rw4G022270 Rw4G022280 Rw4G022310 Rw5G008250 Rw5G014230 Rw5G031190 Rw5G031640 Rw5G031650 Rw5G031680 Rw6G004800 Rw7G015520 Rw7G025750 Rw7G036370 Rw7G036390 Rw7G036410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 48
AclWI GGATC 2 cut(s) 21, 610
AcoI YGGCCR 1 cut(s) 156
AcsI RAATTY 1 cut(s) 349
AcuI CTGAAG 1 cut(s) 269
AcyI GRCGYC 1 cut(s) 189
AfaI GTAC 2 cut(s) 254, 321
AfiI CCNNNNNNNGG 2 cut(s) 270, 367
AgsI TTSAA 4 cut(s) 232, 354, 539, 644
AjnI CCWGG 1 cut(s) 137
AluBI AGCT 5 cut(s) 228, 235, 568, 599, 640
AluI AGCT 5 cut(s) 228, 235, 568, 599, 640
Alw26I GTCTC 2 cut(s) 181, 572
AlwI GGATC 2 cut(s) 21, 610
Ama87I CYCGRG 1 cut(s) 248
AoxI GGCC 1 cut(s) 156
ApeKI GCWGC 3 cut(s) 631, 634, 637
ApoI RAATTY 1 cut(s) 349
AspLEI GCGC 1 cut(s) 124
AsuHPI GGTGA 5 cut(s) 37, 127, 184, 404, 449
AvaI CYCGRG 1 cut(s) 248
BalI TGGCCA 1 cut(s) 158
BauI CACGAG 1 cut(s) 620
BbvI GCAGC 3 cut(s) 643, 646, 649
BccI CCATC 1 cut(s) 237
BceAI ACGGC 2 cut(s) 109, 502
BcgI CGANNNNNNTGC 2 cut(s) 461, 495
BciT130I CCWGG 1 cut(s) 139
BcoDI GTCTC 2 cut(s) 181, 572
BfaI CTAG 1 cut(s) 402
BisI GCNGC 3 cut(s) 632, 635, 638
BlsI GCNGC 3 cut(s) 633, 636, 639
BmcAI AGTACT 1 cut(s) 254
Bme1390I CCNGG 1 cut(s) 139
BmeT110I CYCGRG 1 cut(s) 248
BmrFI CCNGG 1 cut(s) 139
BsaBI GATNNNNATC 1 cut(s) 12
BsaHI GRCGYC 1 cut(s) 189
BsaXI ACNNNNNCTCC 2 cut(s) 312, 342
Bsc4I CCNNNNNNNGG 2 cut(s) 270, 367
Bse1I ACTGG 2 cut(s) 394, 416
Bse3DI GCAATG 1 cut(s) 159
Bse8I GATNNNNATC 1 cut(s) 12
BseBI CCWGG 1 cut(s) 139
BseJI GATNNNNATC 1 cut(s) 12
BseLI CCNNNNNNNGG 2 cut(s) 270, 367
BseMI GCAATG 1 cut(s) 159
BseMII CTCAG 3 cut(s) 192, 567, 596
BseNI ACTGG 2 cut(s) 394, 416
BseXI GCAGC 3 cut(s) 643, 646, 649
BshFI GGCC 1 cut(s) 158
BsiHKCI CYCGRG 1 cut(s) 248
BslFI GGGAC 1 cut(s) 384
BslI CCNNNNNNNGG 2 cut(s) 270, 367
BsmAI GTCTC 2 cut(s) 181, 572
BsmFI GGGAC 1 cut(s) 384
BsnI GGCC 1 cut(s) 158
BsoBI CYCGRG 1 cut(s) 248
Bsp143I GATC 2 cut(s) 13, 615
BspACI CCGC 1 cut(s) 48
BspANI GGCC 1 cut(s) 158
BspCNI CTCAG 3 cut(s) 191, 568, 595
BspPI GGATC 2 cut(s) 21, 610
BsrDI GCAATG 1 cut(s) 159
BsrI ACTGG 2 cut(s) 394, 416
BssMI GATC 2 cut(s) 13, 615
BssNI GRCGYC 1 cut(s) 189
BssSI CACGAG 1 cut(s) 620
Bst2BI CACGAG 1 cut(s) 620
Bst2UI CCWGG 1 cut(s) 139
Bst4CI ACNGT 1 cut(s) 319
Bst6I CTCTTC 1 cut(s) 120
BstACI GRCGYC 1 cut(s) 189
BstC8I GCNNGC 1 cut(s) 429
BstDEI CTNAG 3 cut(s) 178, 576, 582
BstHHI GCGC 1 cut(s) 124
BstKTI GATC 2 cut(s) 16, 618
BstMAI GTCTC 2 cut(s) 181, 572
BstMBI GATC 2 cut(s) 13, 615
BstMWI GCNNNNNNNGC 2 cut(s) 424, 637
BstNI CCWGG 1 cut(s) 139
BstSCI CCNGG 1 cut(s) 137
BstV1I GCAGC 3 cut(s) 643, 646, 649
BstXI CCANNNNNNTGG 1 cut(s) 303
BsuRI GGCC 1 cut(s) 158
Cac8I GCNNGC 1 cut(s) 429
CfoI GCGC 1 cut(s) 124
CseI GACGC 1 cut(s) 178
Csp6I GTAC 2 cut(s) 253, 320
CviAII CATG 4 cut(s) 332, 366, 434, 461
CviQI GTAC 2 cut(s) 253, 320
DdeI CTNAG 3 cut(s) 178, 576, 582
DpnI GATC 2 cut(s) 15, 617
DpnII GATC 2 cut(s) 13, 615
EaeI YGGCCR 1 cut(s) 156
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Eco57I CTGAAG 1 cut(s) 269
Eco88I CYCGRG 1 cut(s) 248
EcoRII CCWGG 1 cut(s) 137
FaeI CATG 4 cut(s) 335, 369, 437, 464
FalI AAGNNNNNCTT 2 cut(s) 552, 584
FaqI GGGAC 1 cut(s) 384
FatI CATG 4 cut(s) 331, 365, 433, 460
FauI CCCGC 1 cut(s) 41
Fnu4HI GCNGC 3 cut(s) 632, 635, 638
Fsp4HI GCNGC 3 cut(s) 632, 635, 638
FspBI CTAG 1 cut(s) 402
GlaI GCGC 1 cut(s) 123
GluI GCNGC 3 cut(s) 632, 635, 638
HaeIII GGCC 1 cut(s) 158
HgaI GACGC 1 cut(s) 178
HhaI GCGC 1 cut(s) 124
Hin1I GRCGYC 1 cut(s) 189
Hin1II CATG 4 cut(s) 335, 369, 437, 464
Hin6I GCGC 1 cut(s) 122
HinP1I GCGC 1 cut(s) 122
HindIII AAGCTT 3 cut(s) 226, 233, 566
HinfI GANTC 2 cut(s) 211, 580
HphI GGTGA 5 cut(s) 37, 127, 184, 404, 449
Hpy166II GTNNAC 2 cut(s) 70, 296
Hpy188I TCNGA 2 cut(s) 288, 585
Hpy188III TCNNGA 2 cut(s) 402, 536
Hpy8I GTNNAC 2 cut(s) 70, 296
HpyAV CCTTC 1 cut(s) 434
HpyCH4III ACNGT 1 cut(s) 319
HpyCH4V TGCA 2 cut(s) 103, 164
HpyF10VI GCNNNNNNNGC 2 cut(s) 424, 637
HpyF3I CTNAG 3 cut(s) 178, 576, 582
Hsp92I GRCGYC 1 cut(s) 189
Hsp92II CATG 4 cut(s) 335, 369, 437, 464
HspAI GCGC 1 cut(s) 122
Kzo9I GATC 2 cut(s) 13, 615
LpnPI CCDG 8 cut(s) 8, 124, 151, 165, 253, 375, 397, 413
Lsp1109I GCAGC 3 cut(s) 643, 646, 649
MaeI CTAG 1 cut(s) 402
MaeIII GTNAC 3 cut(s) 190, 334, 511
MalI GATC 2 cut(s) 15, 617
MboI GATC 2 cut(s) 13, 615
MboII GAAGA 2 cut(s) 107, 598
MlsI TGGCCA 1 cut(s) 158
MluCI AATT 3 cut(s) 349, 354, 504
MluNI TGGCCA 1 cut(s) 158
MlyI GAGTC 1 cut(s) 574
MmeI TCCRAC 1 cut(s) 596
MnlI CCTC 4 cut(s) 45, 101, 306, 616
Mox20I TGGCCA 1 cut(s) 158
MscI TGGCCA 1 cut(s) 158
MseI TTAA 2 cut(s) 347, 602
Msp20I TGGCCA 1 cut(s) 158
MspR9I CCNGG 1 cut(s) 139
MvaI CCWGG 1 cut(s) 139
MwoI GCNNNNNNNGC 2 cut(s) 424, 637
NdeII GATC 2 cut(s) 13, 615
NlaIII CATG 4 cut(s) 335, 369, 437, 464
NmuCI GTSAC 1 cut(s) 190
PaeR7I CTCGAG 1 cut(s) 248
PfeI GAWTC 1 cut(s) 211
PkrI GCNGC 3 cut(s) 633, 636, 639
PleI GAGTC 1 cut(s) 574
PpsI GAGTC 1 cut(s) 574
Psp6I CCWGG 1 cut(s) 137
PspGI CCWGG 1 cut(s) 137
PspXI VCTCGAGB 1 cut(s) 248
RsaI GTAC 2 cut(s) 254, 321
RsaNI GTAC 2 cut(s) 253, 320
SaqAI TTAA 2 cut(s) 347, 602
SatI GCNGC 3 cut(s) 632, 635, 638
Sau3AI GATC 2 cut(s) 13, 615
ScaI AGTACT 1 cut(s) 254
SchI GAGTC 1 cut(s) 574
ScrFI CCNGG 1 cut(s) 139
SetI ASST 9 cut(s) 140, 184, 230, 237, 445, 570, 601, 642, 669
Sfr274I CTCGAG 1 cut(s) 248
SlaI CTCGAG 1 cut(s) 248
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
Sse9I AATT 3 cut(s) 349, 354, 504
SsiI CCGC 1 cut(s) 48
SspMI CTAG 1 cut(s) 402
StyD4I CCNGG 1 cut(s) 137
TaaI ACNGT 1 cut(s) 319
TaqI TCGA 2 cut(s) 249, 481
TasI AATT 3 cut(s) 349, 354, 504
TatI WGTACW 1 cut(s) 252
TfiI GAWTC 1 cut(s) 211
Tru1I TTAA 2 cut(s) 347, 602
Tru9I TTAA 2 cut(s) 347, 602
TseFI GTSAC 1 cut(s) 190
TseI GCWGC 3 cut(s) 631, 634, 637
Tsp45I GTSAC 1 cut(s) 190
TspDTI ATGAA 1 cut(s) 194
XapI RAATTY 1 cut(s) 349
XbaI TCTAGA 1 cut(s) 401
XcmI CCANNNNNNNNNTGG 1 cut(s) 338
XhoI CTCGAG 1 cut(s) 248
XspI CTAG 1 cut(s) 402
ZrmI AGTACT 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.