pycom09g03850

Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Forward (+)
2873435 .. 2874757
1323 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g03850.4

Sequence Viewer

Length: 684 bp
ATGGGAGAGTGGGTGACGCAGTGGCGGGTAGAATTTTTGGGGAGGGAATGGAACTTTGTGGATATAGGCTCAGTAGTTGTCGTTTTGGCTCTGCATTTGCTTACTCTTTTAGCTCCATTTCATTTCACCTGGCCTGCATTTTGGGTGGCAGTTGCACTCTATTTTGTTGTAGGAGTGAGTGTAAATCTTTCTTACCACAGGCAACTTTCCCACCGGAGTTTCAAGCTTCCCAAATGGCTTGAATACTTCTTTGCTTACTGTGGAGTCCTATCGTTTCAGAGAAGTCCGCTTGAATGGGTGAGCATACACCGATCTCACCACCAATTTACAGATACATTGAAAGACCCTCATAGTCCCGTTAGAGGATTTTGGTATAGTCACATCGCAAGATCGATCTTCGATTTTCAGTCTCGGTTTGGAAGTTATGAAGCACGACTTAAGAACGTTGGAGACTTGAAAAGAGATCCATTCTACAGATTTCTTCATTATACGTACCCCCTTCATGCAATAAGTTTTGGAGTGCTGCTCTATGCTGTTGGAGGACTACCATTTTTGGTTTGGGGGCTGTGTGGGTGTAAGGTCAGTAATTTTTCTCCACGCTACTTTTGGAATAAATTCGATTTGCCACACATGGGGAAAACAAGTATGGAATACTGGTCGATCTGTCTAGAAACAACTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

228

Amino Acids

26.72

Weight (kDa)

9.17

Isoelectric Point (pI)

32.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000059)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06080 AT1G06080 AT2G31360 AT2G31360
fragaria_vesca FvH4_1g04480 FvH4_1g04480 FvH4_1g04480 FvH4_1g04480 FvH4_3g00350 FvH4_3g28040 FvH4_3g28040 FvH4_3g28040 FvH4_3g28050 FvH4_5g34260 FvH4_6g42131 FvH4_6g42140 FvH4_6g42171 FvH4_6g42171 FvH4_6g42171 FvH4_6g42171 FvH4_6g42171 FvH4_6g42311 FvH4_6g42312 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640
malus_domestica MD00G1098700.v1.1 MD00G1139800.v1.1 MD00G1174400.v1.1 MD02G1133600.v1.1 MD02G1271200.v1.1 MD09G1114000.v1.1 MD09G1114100.v1.1 MD09G1114200.v1.1 MD11G1194300.v1.1 MD15G1438800.v1.1 MD17G1105800.v1.1 MD17G1105900.v1.1
prunus_persica Prupe.3G210300_v2.0.a1 Prupe.3G210300_v2.0.a1 Prupe.3G210400_v2.0.a1 Prupe.3G210500_v2.0.a1 Prupe.3G210600_v2.0.a1 Prupe.3G210600_v2.0.a1 Prupe.4G228700_v2.0.a1 Prupe.4G228800_v2.0.a1 Prupe.4G228900_v2.0.a1 Prupe.4G229000_v2.0.a1 Prupe.4G229300_v2.0.a1 Prupe.4G229500_v2.0.a1 Prupe.4G229600_v2.0.a1 Prupe.4G259100_v2.0.a1 Prupe.4G259400_v2.0.a1 Prupe.4G259500_v2.0.a1 Prupe.4G259600_v2.0.a1 Prupe.4G259600_v2.0.a1 Prupe.4G259600_v2.0.a1 Prupe.4G259800_v2.0.a1 Prupe.4G259900_v2.0.a1
pyrus_communis pycom03g12440 pycom09g03830 pycom09g03840 pycom09g03850 pycom11g16300 pycom15g38680 pycom17g09850
rosa_chinensis RchiOBHm_Chr1g0337221 RchiOBHm_Chr1g0343481 RchiOBHm_Chr1g0343491 RchiOBHm_Chr1g0343531 RchiOBHm_Chr1g0343551 RchiOBHm_Chr1g0343711 RchiOBHm_Chr1g0343721 RchiOBHm_Chr1g0343731 RchiOBHm_Chr1g0360301 RchiOBHm_Chr2g0086981 RchiOBHm_Chr2g0142871 RchiOBHm_Chr2g0156531 RchiOBHm_Chr2g0157491 RchiOBHm_Chr2g0157791 RchiOBHm_Chr2g0158051 RchiOBHm_Chr2g0158061 RchiOBHm_Chr2g0158141 RchiOBHm_Chr2g0158151 RchiOBHm_Chr2g0158221 RchiOBHm_Chr2g0158251 RchiOBHm_Chr2g0159451 RchiOBHm_Chr4g0403611 RchiOBHm_Chr4g0412621 RchiOBHm_Chr4g0424961 RchiOBHm_Chr4g0425001 RchiOBHm_Chr4g0425091 RchiOBHm_Chr5g0012311 RchiOBHm_Chr5g0022121 RchiOBHm_Chr5g0050081 RchiOBHm_Chr5g0050721 RchiOBHm_Chr5g0050731 RchiOBHm_Chr5g0050761 RchiOBHm_Chr6g0252581 RchiOBHm_Chr7g0199141 RchiOBHm_Chr7g0216811 RchiOBHm_Chr7g0234331 RchiOBHm_Chr7g0234341 RchiOBHm_Chr7g0234371 RchiOBHm_Chr7g0234431 RchiOBHm_Chr7g0234681 RchiOBHm_Chr7g0234741
rosa_laevigata RLG00000001215 RLG00000001222 RLG00000001223 RLG00000001229 RLG00000003811 RLG00000007410 RLG00000015084 RLG00000017931 RLG00000020899 RLG00000020919 RLG00000020994 RLG00000021020 RLG00000021055 RLG00000021056 RLG00000021057 RLG00000021063 RLG00000021065 RLG00000021066 RLG00000021069 RLG00000021071 RLG00000021156 RLG00000024999 RLG00000025005 RLG00000028964 RLG00000029292 RLG00000032646 RLG00000034725 RLG00000034726 RLG00000034730
rosa_multiflora Rmu_co8371849.1_g000001 Rmu_co8422897.1_g000001 Rmu_sc0000195.1_g000039 Rmu_sc0000333.1_g000003 Rmu_sc0000419.1_g000030 Rmu_sc0000419.1_g000034 Rmu_sc0002016.1_g000040 Rmu_sc0002117.1_g000018 Rmu_sc0002117.1_g000023 Rmu_sc0002160.1_g000002 Rmu_sc0002204.1_g000008 Rmu_sc0002775.1_g000001 Rmu_sc0002775.1_g000013 Rmu_sc0002801.1_g000001 Rmu_sc0002801.1_g000013 Rmu_sc0004434.1_g000003 Rmu_sc0004864.1_g000019 Rmu_sc0006966.1_g000006 Rmu_sc0007763.1_g000002 Rmu_sc0007769.1_g000006 Rmu_sc0007769.1_g000013 Rmu_sc0008904.1_g000001 Rmu_sc0013250.1_g000001 Rmu_sc0013327.1_g000004 Rmu_sc0037251.1_g000001 Rmu_ssc0000217.1_g000013 Rmu_ssc0000420.1_g000014 Rmu_ssc0000420.1_g000016
rosa_roxburghii Rroxscaffold_1G00030000 Rroxscaffold_1G00030030 Rroxscaffold_1G00030060 Rroxscaffold_2G00090560 Rroxscaffold_2G00090580 Rroxscaffold_2G00091590 Rroxscaffold_2G00091630 Rroxscaffold_2G00091670 Rroxscaffold_2G00091700 Rroxscaffold_2G00091950 Rroxscaffold_2G00092160 Rroxscaffold_2G00132010 Rroxscaffold_3G00226740 Rroxscaffold_3G00226760 Rroxscaffold_5G00356990 Rroxscaffold_5G00367150 Rroxscaffold_5G00368290 Rroxscaffold_7G00212540
rosa_rugosa Rorug01G0132700.1 Rorug01G0132800.1 Rorug01G0132900.1 Rorug01G0133000.1 Rorug01G0133100.1 Rorug01G0133200.1 Rorug01G0167200 Rorug01G0471200 Rorug02G0461800 Rorug02G0463400 Rorug02G0463500 Rorug02G0463600 Rorug02G0463700 Rorug02G0463700 Rorug02G0463700 Rorug02G0465500 Rorug02G0465800 Rorug02G0465900.1 Rorug02G0466000 Rorug02G0466100 Rorug02G0466200 Rorug02G0466300 Rorug02G0466600 Rorug02G0475900 Rorug04G0200800 Rorug04G0201000 Rorug04G0201100 Rorug04G0384700 Rorug05G0000500 Rorug05G0257600 Rorug05G0257600 Rorug05G0263300 Rorug05G0263700 Rorug05G0537100 Rorug05G0579200 Rorug05G0579200 Rorug07G0155500 Rorug07G0163100 Rorug07G0283400 Rorug07G0284800 Rorug07G0285400
rosa_samantha Rh1AG184700 Rh1BG152200 Rh1DG184100 Rh2AG024000 Rh2AG525800 Rh2AG529100 Rh2AG531600 Rh2AG531800 Rh2AG532600 Rh2AG532700 Rh2AG542500 Rh2BG024600 Rh2BG540500 Rh2BG543000 Rh2BG546000 Rh2BG546100 Rh2BG546500 Rh2BG555700 Rh2CG024700 Rh2CG510500 Rh2CG513400 Rh2CG515800 Rh2CG515900 Rh2CG516300 Rh2CG516400 Rh2CG525100 Rh2CG525900 Rh2DG549000 Rh2DG551900 Rh2DG554300 Rh2DG554500 Rh2DG555100 Rh2DG564800 Rh2DG565100 Rh4AG174400 Rh4AG258000 Rh4BG263600 Rh4CG274800 Rh4DG170100 Rh4DG259200 Rh4DG259500 Rh5AG094500 Rh5AG159500 Rh5AG330300 Rh5AG335300 Rh5AG335400 Rh5AG335800 Rh5BG090700 Rh5BG159000 Rh5BG341000 Rh5BG344600 Rh5BG344800 Rh5BG345200 Rh5CG173200 Rh5CG372600 Rh5CG372700 Rh5CG373100 Rh5DG090200 Rh5DG159000 Rh5DG353800 Rh5DG357700 Rh5DG357900 Rh5DG358300 Rh6AG053400 Rh7AG176500 Rh7AG301900 Rh7AG439800 Rh7BG294700 Rh7BG412800 Rh7CG185600 Rh7CG320600 Rh7CG460400 Rh7CG460500 Rh7CG460900 Rh7CG461300 Rh7DG179500 Rh7DG303400 Rh7DG429500 Rh7DG429600
rosa_wichuraiana Rw0G019480 Rw1G012510 Rw1G015180 Rw2G001890 Rw2G043550 Rw2G043740 Rw2G043960 Rw2G043970 Rw2G044020 Rw2G044030 Rw2G044080 Rw2G044100 Rw2G044850 Rw2G044910 Rw4G014610 Rw4G022270 Rw4G022280 Rw4G022310 Rw5G008250 Rw5G014230 Rw5G031190 Rw5G031640 Rw5G031650 Rw5G031680 Rw6G004800 Rw7G015520 Rw7G025750 Rw7G036370 Rw7G036390 Rw7G036410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 25, 287
AclI AACGTT 1 cut(s) 444
AclWI GGATC 1 cut(s) 458
AcsI RAATTY 2 cut(s) 32, 614
AfaI GTAC 1 cut(s) 494
AfiI CCNNNNNNNGG 2 cut(s) 362, 632
AflII CTTAAG 1 cut(s) 437
AgsI TTSAA 5 cut(s) 223, 242, 293, 340, 457
AjnI CCWGG 1 cut(s) 128
AluBI AGCT 2 cut(s) 113, 226
AluI AGCT 2 cut(s) 113, 226
Alw26I GTCTC 2 cut(s) 414, 444
AlwI GGATC 1 cut(s) 458
AoxI GGCC 1 cut(s) 131
ApeKI GCWGC 1 cut(s) 523
ApoI RAATTY 2 cut(s) 32, 614
Asp700I GAANNNNTTC 1 cut(s) 614
AsuHPI GGTGA 4 cut(s) 25, 118, 308, 310
BbvI GCAGC 1 cut(s) 510
BciT130I CCWGG 1 cut(s) 130
BcoDI GTCTC 2 cut(s) 414, 444
BfaI CTAG 1 cut(s) 668
BfmI CTRYAG 1 cut(s) 472
BfrI CTTAAG 1 cut(s) 437
BisI GCNGC 1 cut(s) 524
BlsI GCNGC 1 cut(s) 525
Bme1390I CCNGG 1 cut(s) 130
BmrFI CCNGG 1 cut(s) 130
BplI GAGNNNNNCTC 2 cut(s) 510, 542
Bsa29I ATCGAT 1 cut(s) 392
BsaAI YACGTR 1 cut(s) 492
BsaWI WCCGGW 1 cut(s) 213
BsaXI ACNNNNNCTCC 3 cut(s) 27, 165, 195
Bsc4I CCNNNNNNNGG 2 cut(s) 362, 632
Bse1I ACTGG 2 cut(s) 659, 682
BseBI CCWGG 1 cut(s) 130
BseCI ATCGAT 1 cut(s) 392
BseLI CCNNNNNNNGG 2 cut(s) 362, 632
BseMII CTCAG 1 cut(s) 84
BseNI ACTGG 2 cut(s) 659, 682
BseXI GCAGC 1 cut(s) 510
BshFI GGCC 1 cut(s) 133
BshVI ATCGAT 1 cut(s) 392
BsiSI CCGG 1 cut(s) 214
BslFI GGGAC 1 cut(s) 339
BslI CCNNNNNNNGG 2 cut(s) 362, 632
BsmAI GTCTC 2 cut(s) 414, 444
BsmFI GGGAC 1 cut(s) 339
BsnI GGCC 1 cut(s) 133
Bsp143I GATC 5 cut(s) 311, 389, 393, 463, 660
BspACI CCGC 2 cut(s) 25, 287
BspANI GGCC 1 cut(s) 133
BspCNI CTCAG 1 cut(s) 83
BspDI ATCGAT 1 cut(s) 392
BspPI GGATC 1 cut(s) 458
BspTI CTTAAG 1 cut(s) 437
BsrI ACTGG 2 cut(s) 659, 682
BssMI GATC 5 cut(s) 311, 389, 393, 463, 660
Bst2UI CCWGG 1 cut(s) 130
Bst4CI ACNGT 1 cut(s) 260
BstAFI CTTAAG 1 cut(s) 437
BstBAI YACGTR 1 cut(s) 492
BstC8I GCNNGC 1 cut(s) 135
BstDEI CTNAG 1 cut(s) 70
BstKTI GATC 5 cut(s) 314, 392, 396, 466, 663
BstMAI GTCTC 2 cut(s) 414, 444
BstMBI GATC 5 cut(s) 311, 389, 393, 463, 660
BstNI CCWGG 1 cut(s) 130
BstSCI CCNGG 1 cut(s) 128
BstSFI CTRYAG 1 cut(s) 472
BstSNI TACGTA 1 cut(s) 492
BstV1I GCAGC 1 cut(s) 510
BstX2I RGATCY 1 cut(s) 463
BstYI RGATCY 1 cut(s) 463
Bsu15I ATCGAT 1 cut(s) 392
BsuRI GGCC 1 cut(s) 133
BsuTUI ATCGAT 1 cut(s) 392
BtgZI GCGATG 1 cut(s) 367
BtsI GCAGTG 1 cut(s) 26
BtsIMutI CAGTG 1 cut(s) 26
Cac8I GCNNGC 1 cut(s) 135
ClaI ATCGAT 1 cut(s) 392
CseI GACGC 1 cut(s) 25
Csp6I GTAC 1 cut(s) 493
CviAII CATG 2 cut(s) 503, 631
CviJI RGCY 7 cut(s) 69, 89, 113, 133, 226, 238, 565
CviKI_1 RGCY 7 cut(s) 69, 89, 113, 133, 226, 238, 565
CviQI GTAC 1 cut(s) 493
DdeI CTNAG 1 cut(s) 70
DpnI GATC 5 cut(s) 313, 391, 395, 465, 662
DpnII GATC 5 cut(s) 311, 389, 393, 463, 660
Eco105I TACGTA 1 cut(s) 492
EcoRII CCWGG 1 cut(s) 128
FaeI CATG 2 cut(s) 506, 634
FalI AAGNNNNNCTT 2 cut(s) 420, 452
FaqI GGGAC 1 cut(s) 339
FatI CATG 2 cut(s) 502, 630
FauI CCCGC 1 cut(s) 18
Fnu4HI GCNGC 1 cut(s) 524
Fsp4HI GCNGC 1 cut(s) 524
FspBI CTAG 1 cut(s) 668
GluI GCNGC 1 cut(s) 524
HaeIII GGCC 1 cut(s) 133
HapII CCGG 1 cut(s) 214
HgaI GACGC 1 cut(s) 25
Hin1II CATG 2 cut(s) 506, 634
HindIII AAGCTT 1 cut(s) 224
HinfI GANTC 1 cut(s) 264
HpaII CCGG 1 cut(s) 214
HphI GGTGA 4 cut(s) 25, 118, 308, 310
Hpy188I TCNGA 1 cut(s) 279
Hpy188III TCNNGA 1 cut(s) 668
HpyAV CCTTC 1 cut(s) 509
HpyCH4III ACNGT 1 cut(s) 260
HpyCH4IV ACGT 2 cut(s) 444, 491
HpyCH4V TGCA 4 cut(s) 94, 137, 155, 506
HpyF3I CTNAG 1 cut(s) 70
HpySE526I ACGT 2 cut(s) 444, 491
Hsp92II CATG 2 cut(s) 506, 634
Kzo9I GATC 5 cut(s) 311, 389, 393, 463, 660
LmnI GCTCC 1 cut(s) 118
LpnPI CCDG 7 cut(s) 115, 142, 147, 184, 227, 640, 663
Lsp1109I GCAGC 1 cut(s) 510
MaeI CTAG 1 cut(s) 668
MaeII ACGT 2 cut(s) 444, 491
MaeIII GTNAC 2 cut(s) 13, 377
MalI GATC 5 cut(s) 313, 391, 395, 465, 662
MboI GATC 5 cut(s) 311, 389, 393, 463, 660
MboII GAAGA 2 cut(s) 388, 473
MflI RGATCY 1 cut(s) 463
MluCI AATT 4 cut(s) 32, 323, 586, 614
MlyI GAGTC 1 cut(s) 273
MmeI TCCRAC 2 cut(s) 427, 517
MnlI CCTC 4 cut(s) 36, 356, 357, 533
MroXI GAANNNNTTC 1 cut(s) 614
MseI TTAA 2 cut(s) 438, 682
MspCI CTTAAG 1 cut(s) 437
MspI CCGG 1 cut(s) 214
MspR9I CCNGG 1 cut(s) 130
MvaI CCWGG 1 cut(s) 130
NdeII GATC 5 cut(s) 311, 389, 393, 463, 660
NlaIII CATG 2 cut(s) 506, 634
NmuCI GTSAC 2 cut(s) 13, 377
PdmI GAANNNNTTC 1 cut(s) 614
PkrI GCNGC 1 cut(s) 525
PleI GAGTC 1 cut(s) 272
PpsI GAGTC 1 cut(s) 272
Ppu21I YACGTR 1 cut(s) 492
Psp1406I AACGTT 1 cut(s) 444
Psp6I CCWGG 1 cut(s) 128
PspGI CCWGG 1 cut(s) 128
PsuI RGATCY 1 cut(s) 463
RsaI GTAC 1 cut(s) 494
RsaNI GTAC 1 cut(s) 493
SaqAI TTAA 2 cut(s) 438, 682
SatI GCNGC 1 cut(s) 524
Sau3AI GATC 5 cut(s) 311, 389, 393, 463, 660
SchI GAGTC 1 cut(s) 273
ScrFI CCNGG 1 cut(s) 130
SetI ASST 6 cut(s) 115, 131, 228, 447, 494, 582
SfcI CTRYAG 1 cut(s) 472
SmlI CTYRAG 1 cut(s) 437
SmoI CTYRAG 1 cut(s) 437
SnaBI TACGTA 1 cut(s) 492
Sse9I AATT 4 cut(s) 32, 323, 586, 614
SsiI CCGC 2 cut(s) 25, 287
SspMI CTAG 1 cut(s) 668
StyD4I CCNGG 1 cut(s) 128
TaaI ACNGT 1 cut(s) 260
TaiI ACGT 2 cut(s) 447, 494
TaqI TCGA 4 cut(s) 392, 399, 618, 659
TasI AATT 4 cut(s) 32, 323, 586, 614
Tru1I TTAA 2 cut(s) 438, 682
Tru9I TTAA 2 cut(s) 438, 682
TscAI CASTG 1 cut(s) 26
TseFI GTSAC 2 cut(s) 13, 377
TseI GCWGC 1 cut(s) 523
Tsp45I GTSAC 2 cut(s) 13, 377
TspDTI ATGAA 4 cut(s) 110, 441, 473, 491
TspRI CASTG 1 cut(s) 26
Vha464I CTTAAG 1 cut(s) 437
XapI RAATTY 2 cut(s) 32, 614
XbaI TCTAGA 1 cut(s) 667
XcmI CCANNNNNNNNNTGG 2 cut(s) 555, 603
XmnI GAANNNNTTC 1 cut(s) 614
XspI CTAG 1 cut(s) 668
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.