RchiOBHm_Chr1g0343731

Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000059
Physical Location & Seq
Forward (+)
36034653 .. 36036625
1973 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57024

Sequence Viewer

Length: 552 bp
ATGGATTTATACCATCTTACTCTCATTCTGGGCGTCCATTGCCTCTGTCTTTTAGCACCATTTCAGTTCACTTGGGGTGCACTTTGGGTGGCAATATCACTATATTTGGTGTCGGGTATGGGTGTAACTATCTCTTACCATCAGAACCTTGCCCACCAGAGCTTTAAGGTCCCCAAATGGCTTGAATACTCGCTCGCTTATTGCGCAGTTCTATCACTTCAGGGTAGTCCACTTGAATGGGTGAGCAGCCATAGATACCACCATCAATTTACAGACAAATTGAGAGACCCTCATAGCCCCACTAAGGGATTTTGGTTTAGTCACGTGAATTGGGCGTTCGATTATCATTCTCGGTTTGGAAGCGTAAGCGTGGTAGTCGTTTCACAAGTTACTTTTTCAATAAATTCTATTTGCCACACTTGGGGAAAACAAATATGGGATACTGGTGATGCGTCTAAAAACAACTGGTTGTTTGGATTGCTGGCATTCGTAGAAGGTTGGCACAATAATCACCATGCTTTTGAGTACTCAGCTCGACAGGGCTTAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FA_desaturase

Protein Analysis

183

Amino Acids

21.06

Weight (kDa)

6.91

Isoelectric Point (pI)

28.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FA_desaturase PF00487 24 - 114 8.5e-07 Fatty acid desaturase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000059)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06080 AT1G06080 AT2G31360 AT2G31360
fragaria_vesca FvH4_1g04480 FvH4_1g04480 FvH4_1g04480 FvH4_1g04480 FvH4_3g00350 FvH4_3g28040 FvH4_3g28040 FvH4_3g28040 FvH4_3g28050 FvH4_5g34260 FvH4_6g42131 FvH4_6g42140 FvH4_6g42171 FvH4_6g42171 FvH4_6g42171 FvH4_6g42171 FvH4_6g42171 FvH4_6g42311 FvH4_6g42312 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640
malus_domestica MD00G1098700.v1.1 MD00G1139800.v1.1 MD00G1174400.v1.1 MD02G1133600.v1.1 MD02G1271200.v1.1 MD09G1114000.v1.1 MD09G1114100.v1.1 MD09G1114200.v1.1 MD11G1194300.v1.1 MD15G1438800.v1.1 MD17G1105800.v1.1 MD17G1105900.v1.1
prunus_persica Prupe.3G210300_v2.0.a1 Prupe.3G210300_v2.0.a1 Prupe.3G210400_v2.0.a1 Prupe.3G210500_v2.0.a1 Prupe.3G210600_v2.0.a1 Prupe.3G210600_v2.0.a1 Prupe.4G228700_v2.0.a1 Prupe.4G228800_v2.0.a1 Prupe.4G228900_v2.0.a1 Prupe.4G229000_v2.0.a1 Prupe.4G229300_v2.0.a1 Prupe.4G229500_v2.0.a1 Prupe.4G229600_v2.0.a1 Prupe.4G259100_v2.0.a1 Prupe.4G259400_v2.0.a1 Prupe.4G259500_v2.0.a1 Prupe.4G259600_v2.0.a1 Prupe.4G259600_v2.0.a1 Prupe.4G259600_v2.0.a1 Prupe.4G259800_v2.0.a1 Prupe.4G259900_v2.0.a1
pyrus_communis pycom03g12440 pycom09g03830 pycom09g03840 pycom09g03850 pycom11g16300 pycom15g38680 pycom17g09850
rosa_chinensis RchiOBHm_Chr1g0337221 RchiOBHm_Chr1g0343481 RchiOBHm_Chr1g0343491 RchiOBHm_Chr1g0343531 RchiOBHm_Chr1g0343551 RchiOBHm_Chr1g0343711 RchiOBHm_Chr1g0343721 RchiOBHm_Chr1g0343731 RchiOBHm_Chr1g0360301 RchiOBHm_Chr2g0086981 RchiOBHm_Chr2g0142871 RchiOBHm_Chr2g0156531 RchiOBHm_Chr2g0157491 RchiOBHm_Chr2g0157791 RchiOBHm_Chr2g0158051 RchiOBHm_Chr2g0158061 RchiOBHm_Chr2g0158141 RchiOBHm_Chr2g0158151 RchiOBHm_Chr2g0158221 RchiOBHm_Chr2g0158251 RchiOBHm_Chr2g0159451 RchiOBHm_Chr4g0403611 RchiOBHm_Chr4g0412621 RchiOBHm_Chr4g0424961 RchiOBHm_Chr4g0425001 RchiOBHm_Chr4g0425091 RchiOBHm_Chr5g0012311 RchiOBHm_Chr5g0022121 RchiOBHm_Chr5g0050081 RchiOBHm_Chr5g0050721 RchiOBHm_Chr5g0050731 RchiOBHm_Chr5g0050761 RchiOBHm_Chr6g0252581 RchiOBHm_Chr7g0199141 RchiOBHm_Chr7g0216811 RchiOBHm_Chr7g0234331 RchiOBHm_Chr7g0234341 RchiOBHm_Chr7g0234371 RchiOBHm_Chr7g0234431 RchiOBHm_Chr7g0234681 RchiOBHm_Chr7g0234741
rosa_laevigata RLG00000001215 RLG00000001222 RLG00000001223 RLG00000001229 RLG00000003811 RLG00000007410 RLG00000015084 RLG00000017931 RLG00000020899 RLG00000020919 RLG00000020994 RLG00000021020 RLG00000021055 RLG00000021056 RLG00000021057 RLG00000021063 RLG00000021065 RLG00000021066 RLG00000021069 RLG00000021071 RLG00000021156 RLG00000024999 RLG00000025005 RLG00000028964 RLG00000029292 RLG00000032646 RLG00000034725 RLG00000034726 RLG00000034730
rosa_multiflora Rmu_co8371849.1_g000001 Rmu_co8422897.1_g000001 Rmu_sc0000195.1_g000039 Rmu_sc0000333.1_g000003 Rmu_sc0000419.1_g000030 Rmu_sc0000419.1_g000034 Rmu_sc0002016.1_g000040 Rmu_sc0002117.1_g000018 Rmu_sc0002117.1_g000023 Rmu_sc0002160.1_g000002 Rmu_sc0002204.1_g000008 Rmu_sc0002775.1_g000001 Rmu_sc0002775.1_g000013 Rmu_sc0002801.1_g000001 Rmu_sc0002801.1_g000013 Rmu_sc0004434.1_g000003 Rmu_sc0004864.1_g000019 Rmu_sc0006966.1_g000006 Rmu_sc0007763.1_g000002 Rmu_sc0007769.1_g000006 Rmu_sc0007769.1_g000013 Rmu_sc0008904.1_g000001 Rmu_sc0013250.1_g000001 Rmu_sc0013327.1_g000004 Rmu_sc0037251.1_g000001 Rmu_ssc0000217.1_g000013 Rmu_ssc0000420.1_g000014 Rmu_ssc0000420.1_g000016
rosa_roxburghii Rroxscaffold_1G00030000 Rroxscaffold_1G00030030 Rroxscaffold_1G00030060 Rroxscaffold_2G00090560 Rroxscaffold_2G00090580 Rroxscaffold_2G00091590 Rroxscaffold_2G00091630 Rroxscaffold_2G00091670 Rroxscaffold_2G00091700 Rroxscaffold_2G00091950 Rroxscaffold_2G00092160 Rroxscaffold_2G00132010 Rroxscaffold_3G00226740 Rroxscaffold_3G00226760 Rroxscaffold_5G00356990 Rroxscaffold_5G00367150 Rroxscaffold_5G00368290 Rroxscaffold_7G00212540
rosa_rugosa Rorug01G0132700.1 Rorug01G0132800.1 Rorug01G0132900.1 Rorug01G0133000.1 Rorug01G0133100.1 Rorug01G0133200.1 Rorug01G0167200 Rorug01G0471200 Rorug02G0461800 Rorug02G0463400 Rorug02G0463500 Rorug02G0463600 Rorug02G0463700 Rorug02G0463700 Rorug02G0463700 Rorug02G0465500 Rorug02G0465800 Rorug02G0465900.1 Rorug02G0466000 Rorug02G0466100 Rorug02G0466200 Rorug02G0466300 Rorug02G0466600 Rorug02G0475900 Rorug04G0200800 Rorug04G0201000 Rorug04G0201100 Rorug04G0384700 Rorug05G0000500 Rorug05G0257600 Rorug05G0257600 Rorug05G0263300 Rorug05G0263700 Rorug05G0537100 Rorug05G0579200 Rorug05G0579200 Rorug07G0155500 Rorug07G0163100 Rorug07G0283400 Rorug07G0284800 Rorug07G0285400
rosa_samantha Rh1AG184700 Rh1BG152200 Rh1DG184100 Rh2AG024000 Rh2AG525800 Rh2AG529100 Rh2AG531600 Rh2AG531800 Rh2AG532600 Rh2AG532700 Rh2AG542500 Rh2BG024600 Rh2BG540500 Rh2BG543000 Rh2BG546000 Rh2BG546100 Rh2BG546500 Rh2BG555700 Rh2CG024700 Rh2CG510500 Rh2CG513400 Rh2CG515800 Rh2CG515900 Rh2CG516300 Rh2CG516400 Rh2CG525100 Rh2CG525900 Rh2DG549000 Rh2DG551900 Rh2DG554300 Rh2DG554500 Rh2DG555100 Rh2DG564800 Rh2DG565100 Rh4AG174400 Rh4AG258000 Rh4BG263600 Rh4CG274800 Rh4DG170100 Rh4DG259200 Rh4DG259500 Rh5AG094500 Rh5AG159500 Rh5AG330300 Rh5AG335300 Rh5AG335400 Rh5AG335800 Rh5BG090700 Rh5BG159000 Rh5BG341000 Rh5BG344600 Rh5BG344800 Rh5BG345200 Rh5CG173200 Rh5CG372600 Rh5CG372700 Rh5CG373100 Rh5DG090200 Rh5DG159000 Rh5DG353800 Rh5DG357700 Rh5DG357900 Rh5DG358300 Rh6AG053400 Rh7AG176500 Rh7AG301900 Rh7AG439800 Rh7BG294700 Rh7BG412800 Rh7CG185600 Rh7CG320600 Rh7CG460400 Rh7CG460500 Rh7CG460900 Rh7CG461300 Rh7DG179500 Rh7DG303400 Rh7DG429500 Rh7DG429600
rosa_wichuraiana Rw0G019480 Rw1G012510 Rw1G015180 Rw2G001890 Rw2G043550 Rw2G043740 Rw2G043960 Rw2G043970 Rw2G044020 Rw2G044030 Rw2G044080 Rw2G044100 Rw2G044850 Rw2G044910 Rw4G014610 Rw4G022270 Rw4G022280 Rw4G022310 Rw5G008250 Rw5G014230 Rw5G031190 Rw5G031640 Rw5G031650 Rw5G031680 Rw6G004800 Rw7G015520 Rw7G025750 Rw7G036370 Rw7G036390 Rw7G036410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 205
AcsI RAATTY 1 cut(s) 403
AcuI CTGAAG 1 cut(s) 203
AcvI CACGTG 1 cut(s) 325
AcyI GRCGYC 1 cut(s) 33
AfaI GTAC 1 cut(s) 527
AfiI CCNNNNNNNGG 3 cut(s) 304, 305, 421
AgsI TTSAA 3 cut(s) 185, 236, 399
AluBI AGCT 2 cut(s) 162, 533
AluI AGCT 2 cut(s) 162, 533
Alw21I GWGCWC 1 cut(s) 82
Alw26I GTCTC 1 cut(s) 279
Alw44I GTGCAC 1 cut(s) 78
ApaLI GTGCAC 1 cut(s) 78
ApeKI GCWGC 1 cut(s) 246
ApoI RAATTY 1 cut(s) 403
AspLEI GCGC 1 cut(s) 206
AspS9I GGNCC 1 cut(s) 169
AsuHPI GGTGA 3 cut(s) 253, 458, 503
AvaII GGWCC 1 cut(s) 169
BaeGI GKGCMC 1 cut(s) 82
BbrPI CACGTG 1 cut(s) 325
Bbv12I GWGCWC 1 cut(s) 82
BbvI GCAGC 1 cut(s) 258
BccI CCATC 3 cut(s) 21, 147, 270
BciVI GTATCC 1 cut(s) 433
BcoDI GTCTC 1 cut(s) 279
BfuI GTATCC 1 cut(s) 433
BisI GCNGC 1 cut(s) 247
BlsI GCNGC 1 cut(s) 248
BmcAI AGTACT 1 cut(s) 527
Bme18I GGWCC 1 cut(s) 169
BmgT120I GGNCC 1 cut(s) 169
BmiI GGNNCC 1 cut(s) 171
BmsI GCATC 1 cut(s) 439
BplI GAGNNNNNCTC 2 cut(s) 274, 306
BsaAI YACGTR 1 cut(s) 325
BsaHI GRCGYC 1 cut(s) 33
BsaI GGTCTC 1 cut(s) 279
Bsc4I CCNNNNNNNGG 3 cut(s) 304, 305, 421
Bse1I ACTGG 2 cut(s) 448, 470
Bse3DI GCAATG 1 cut(s) 37
BseLI CCNNNNNNNGG 3 cut(s) 304, 305, 421
BseMI GCAATG 1 cut(s) 37
BseMII CTCAG 1 cut(s) 543
BseNI ACTGG 2 cut(s) 448, 470
BseSI GKGCMC 1 cut(s) 82
BseXI GCAGC 1 cut(s) 258
BsiHKAI GWGCWC 1 cut(s) 82
BslFI GGGAC 1 cut(s) 155
BslI CCNNNNNNNGG 3 cut(s) 304, 305, 421
BsmAI GTCTC 1 cut(s) 279
BsmFI GGGAC 1 cut(s) 155
BsmI GAATGC 1 cut(s) 485
Bso31I GGTCTC 1 cut(s) 279
Bsp1286I GDGCHC 1 cut(s) 82
BspCNI CTCAG 1 cut(s) 542
BspLI GGNNCC 1 cut(s) 171
BspTNI GGTCTC 1 cut(s) 279
BsrDI GCAATG 1 cut(s) 37
BsrI ACTGG 2 cut(s) 448, 470
BssNI GRCGYC 1 cut(s) 33
BstACI GRCGYC 1 cut(s) 33
BstBAI YACGTR 1 cut(s) 325
BstC8I GCNNGC 2 cut(s) 195, 483
BstDEI CTNAG 3 cut(s) 303, 529, 544
BstHHI GCGC 1 cut(s) 206
BstMAI GTCTC 1 cut(s) 279
BstMWI GCNNNNNNNGC 2 cut(s) 39, 203
BstSLI GKGCMC 1 cut(s) 82
BstV1I GCAGC 1 cut(s) 258
BstXI CCANNNNNNTGG 1 cut(s) 237
BsuI GTATCC 1 cut(s) 433
Cac8I GCNNGC 2 cut(s) 195, 483
CfoI GCGC 1 cut(s) 206
Cfr13I GGNCC 1 cut(s) 169
CseI GACGC 2 cut(s) 22, 441
Csp6I GTAC 1 cut(s) 526
CviAII CATG 1 cut(s) 515
CviJI RGCY 6 cut(s) 162, 181, 249, 297, 533, 543
CviKI_1 RGCY 6 cut(s) 162, 181, 249, 297, 533, 543
CviQI GTAC 1 cut(s) 526
DdeI CTNAG 3 cut(s) 303, 529, 544
Eco31I GGTCTC 1 cut(s) 279
Eco47I GGWCC 1 cut(s) 169
Eco57I CTGAAG 1 cut(s) 203
Eco72I CACGTG 1 cut(s) 325
EcoO109I RGGNCCY 1 cut(s) 169
FaeI CATG 1 cut(s) 518
FaiI YATR 7 cut(s) 10, 103, 119, 252, 294, 436, 516
FaqI GGGAC 1 cut(s) 155
FatI CATG 1 cut(s) 514
Fnu4HI GCNGC 1 cut(s) 247
Fsp4HI GCNGC 1 cut(s) 247
FspI TGCGCA 1 cut(s) 205
GlaI GCGC 1 cut(s) 205
GluI GCNGC 1 cut(s) 247
HgaI GACGC 2 cut(s) 22, 441
HhaI GCGC 1 cut(s) 206
Hin1I GRCGYC 1 cut(s) 33
Hin1II CATG 1 cut(s) 518
Hin6I GCGC 1 cut(s) 204
HinP1I GCGC 1 cut(s) 204
HphI GGTGA 3 cut(s) 253, 458, 503
Hpy166II GTNNAC 3 cut(s) 69, 80, 230
Hpy188I TCNGA 1 cut(s) 144
Hpy8I GTNNAC 3 cut(s) 69, 80, 230
HpyAV CCTTC 1 cut(s) 488
HpyCH4IV ACGT 1 cut(s) 324
HpyCH4V TGCA 1 cut(s) 80
HpyF10VI GCNNNNNNNGC 2 cut(s) 39, 203
HpyF3I CTNAG 3 cut(s) 303, 529, 544
HpySE526I ACGT 1 cut(s) 324
Hsp92I GRCGYC 1 cut(s) 33
Hsp92II CATG 1 cut(s) 518
HspAI GCGC 1 cut(s) 204
LpnPI CCDG 7 cut(s) 14, 170, 206, 429, 451, 467, 524
Lsp1109I GCAGC 1 cut(s) 258
LweI GCATC 1 cut(s) 439
MaeII ACGT 1 cut(s) 324
MaeIII GTNAC 3 cut(s) 124, 320, 388
MhlI GDGCHC 1 cut(s) 82
MluCI AATT 4 cut(s) 266, 278, 328, 403
MnlI CCTC 2 cut(s) 53, 300
MseI TTAA 1 cut(s) 165
MslI CAYNNNNRTG 1 cut(s) 235
Mva1269I GAATGC 1 cut(s) 485
MwoI GCNNNNNNNGC 2 cut(s) 39, 203
NlaIII CATG 1 cut(s) 518
NlaIV GGNNCC 1 cut(s) 171
NmuCI GTSAC 1 cut(s) 320
NsbI TGCGCA 1 cut(s) 205
PctI GAATGC 1 cut(s) 485
PkrI GCNGC 1 cut(s) 248
PmaCI CACGTG 1 cut(s) 325
PmlI CACGTG 1 cut(s) 325
Ppu21I YACGTR 1 cut(s) 325
PpuMI RGGWCCY 1 cut(s) 169
Psp5II RGGWCCY 1 cut(s) 169
PspCI CACGTG 1 cut(s) 325
PspN4I GGNNCC 1 cut(s) 171
PspPI GGNCC 1 cut(s) 169
PspPPI RGGWCCY 1 cut(s) 169
RsaI GTAC 1 cut(s) 527
RsaNI GTAC 1 cut(s) 526
RseI CAYNNNNRTG 1 cut(s) 235
SaqAI TTAA 1 cut(s) 165
SatI GCNGC 1 cut(s) 247
Sau96I GGNCC 1 cut(s) 169
ScaI AGTACT 1 cut(s) 527
SduI GDGCHC 1 cut(s) 82
SetI ASST 6 cut(s) 150, 164, 171, 327, 499, 535
SfaNI GCATC 1 cut(s) 439
SinI GGWCC 1 cut(s) 169
SmiMI CAYNNNNRTG 1 cut(s) 235
Sse9I AATT 4 cut(s) 266, 278, 328, 403
TaiI ACGT 1 cut(s) 327
TaqI TCGA 2 cut(s) 339, 535
TasI AATT 4 cut(s) 266, 278, 328, 403
TatI WGTACW 1 cut(s) 525
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TseFI GTSAC 1 cut(s) 320
TseI GCWGC 1 cut(s) 246
Tsp45I GTSAC 1 cut(s) 320
VneI GTGCAC 1 cut(s) 78
VpaK11BI GGWCC 1 cut(s) 169
XapI RAATTY 1 cut(s) 403
ZrmI AGTACT 1 cut(s) 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.