Rmu_sc0002160.1_g000002

Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002160.1
Physical Location & Seq
Forward (+)
3011 .. 4112
1102 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002160.1_g000002.1.cds

Sequence Viewer

Length: 783 bp
atggcatggctaccttggatggtgcagaagccggtttattttctggggaggcaatggaacggtgtcgacatagttagtgttttcacccttggtgctatacatcttcttgctcttctggcgccatttcatttcacatggtctgctttttggttgggcgtagcactctactatgtcactggtgtgggggtaactatatcttttcatagaaatctcgcccacggaagcttcaagcttcccaaatggctggaatacttcttcgcctattgcgccgttcattcgcttcagtatgatggaaaactatacaatgttggagatttgaaaaaacagacatattataagtttcttcactacacgcacccttatcattgtattgcttgtggagttgtactctatcgcataggaggaatgccctatttagtttgggcactggctgtgagaacgatattttttctccatgtaactttttcaataaattcggtttgccacatatggggaaaccaagtatgggatactggtgatttgtccaaaaacaactggttatgtggattgctagctcatggagaaggttggcacaataaccaccatgcttttgagtactcagctcgacaaggttttgaatggtggcagattgatattacttggtatctgataaggtttcttgagattgttggtttggcaacggatgttaagctcccgactgagcttcagaagaaccgaaaagctttgtcaaacaaaatcagtatcctggagcaggagggaaggtttgaaacaaaagtgaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

260

Amino Acids

30.3

Weight (kDa)

8.99

Isoelectric Point (pI)

25.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000059)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06080 AT1G06080 AT2G31360 AT2G31360
fragaria_vesca FvH4_1g04480 FvH4_1g04480 FvH4_1g04480 FvH4_1g04480 FvH4_3g00350 FvH4_3g28040 FvH4_3g28040 FvH4_3g28040 FvH4_3g28050 FvH4_5g34260 FvH4_6g42131 FvH4_6g42140 FvH4_6g42171 FvH4_6g42171 FvH4_6g42171 FvH4_6g42171 FvH4_6g42171 FvH4_6g42311 FvH4_6g42312 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640 FvH4_6g43640
malus_domestica MD00G1098700.v1.1 MD00G1139800.v1.1 MD00G1174400.v1.1 MD02G1133600.v1.1 MD02G1271200.v1.1 MD09G1114000.v1.1 MD09G1114100.v1.1 MD09G1114200.v1.1 MD11G1194300.v1.1 MD15G1438800.v1.1 MD17G1105800.v1.1 MD17G1105900.v1.1
prunus_persica Prupe.3G210300_v2.0.a1 Prupe.3G210300_v2.0.a1 Prupe.3G210400_v2.0.a1 Prupe.3G210500_v2.0.a1 Prupe.3G210600_v2.0.a1 Prupe.3G210600_v2.0.a1 Prupe.4G228700_v2.0.a1 Prupe.4G228800_v2.0.a1 Prupe.4G228900_v2.0.a1 Prupe.4G229000_v2.0.a1 Prupe.4G229300_v2.0.a1 Prupe.4G229500_v2.0.a1 Prupe.4G229600_v2.0.a1 Prupe.4G259100_v2.0.a1 Prupe.4G259400_v2.0.a1 Prupe.4G259500_v2.0.a1 Prupe.4G259600_v2.0.a1 Prupe.4G259600_v2.0.a1 Prupe.4G259600_v2.0.a1 Prupe.4G259800_v2.0.a1 Prupe.4G259900_v2.0.a1
pyrus_communis pycom03g12440 pycom09g03830 pycom09g03840 pycom09g03850 pycom11g16300 pycom15g38680 pycom17g09850
rosa_chinensis RchiOBHm_Chr1g0337221 RchiOBHm_Chr1g0343481 RchiOBHm_Chr1g0343491 RchiOBHm_Chr1g0343531 RchiOBHm_Chr1g0343551 RchiOBHm_Chr1g0343711 RchiOBHm_Chr1g0343721 RchiOBHm_Chr1g0343731 RchiOBHm_Chr1g0360301 RchiOBHm_Chr2g0086981 RchiOBHm_Chr2g0142871 RchiOBHm_Chr2g0156531 RchiOBHm_Chr2g0157491 RchiOBHm_Chr2g0157791 RchiOBHm_Chr2g0158051 RchiOBHm_Chr2g0158061 RchiOBHm_Chr2g0158141 RchiOBHm_Chr2g0158151 RchiOBHm_Chr2g0158221 RchiOBHm_Chr2g0158251 RchiOBHm_Chr2g0159451 RchiOBHm_Chr4g0403611 RchiOBHm_Chr4g0412621 RchiOBHm_Chr4g0424961 RchiOBHm_Chr4g0425001 RchiOBHm_Chr4g0425091 RchiOBHm_Chr5g0012311 RchiOBHm_Chr5g0022121 RchiOBHm_Chr5g0050081 RchiOBHm_Chr5g0050721 RchiOBHm_Chr5g0050731 RchiOBHm_Chr5g0050761 RchiOBHm_Chr6g0252581 RchiOBHm_Chr7g0199141 RchiOBHm_Chr7g0216811 RchiOBHm_Chr7g0234331 RchiOBHm_Chr7g0234341 RchiOBHm_Chr7g0234371 RchiOBHm_Chr7g0234431 RchiOBHm_Chr7g0234681 RchiOBHm_Chr7g0234741
rosa_laevigata RLG00000001215 RLG00000001222 RLG00000001223 RLG00000001229 RLG00000003811 RLG00000007410 RLG00000015084 RLG00000017931 RLG00000020899 RLG00000020919 RLG00000020994 RLG00000021020 RLG00000021055 RLG00000021056 RLG00000021057 RLG00000021063 RLG00000021065 RLG00000021066 RLG00000021069 RLG00000021071 RLG00000021156 RLG00000024999 RLG00000025005 RLG00000028964 RLG00000029292 RLG00000032646 RLG00000034725 RLG00000034726 RLG00000034730
rosa_multiflora Rmu_co8371849.1_g000001 Rmu_co8422897.1_g000001 Rmu_sc0000195.1_g000039 Rmu_sc0000333.1_g000003 Rmu_sc0000419.1_g000030 Rmu_sc0000419.1_g000034 Rmu_sc0002016.1_g000040 Rmu_sc0002117.1_g000018 Rmu_sc0002117.1_g000023 Rmu_sc0002160.1_g000002 Rmu_sc0002204.1_g000008 Rmu_sc0002775.1_g000001 Rmu_sc0002775.1_g000013 Rmu_sc0002801.1_g000001 Rmu_sc0002801.1_g000013 Rmu_sc0004434.1_g000003 Rmu_sc0004864.1_g000019 Rmu_sc0006966.1_g000006 Rmu_sc0007763.1_g000002 Rmu_sc0007769.1_g000006 Rmu_sc0007769.1_g000013 Rmu_sc0008904.1_g000001 Rmu_sc0013250.1_g000001 Rmu_sc0013327.1_g000004 Rmu_sc0037251.1_g000001 Rmu_ssc0000217.1_g000013 Rmu_ssc0000420.1_g000014 Rmu_ssc0000420.1_g000016
rosa_roxburghii Rroxscaffold_1G00030000 Rroxscaffold_1G00030030 Rroxscaffold_1G00030060 Rroxscaffold_2G00090560 Rroxscaffold_2G00090580 Rroxscaffold_2G00091590 Rroxscaffold_2G00091630 Rroxscaffold_2G00091670 Rroxscaffold_2G00091700 Rroxscaffold_2G00091950 Rroxscaffold_2G00092160 Rroxscaffold_2G00132010 Rroxscaffold_3G00226740 Rroxscaffold_3G00226760 Rroxscaffold_5G00356990 Rroxscaffold_5G00367150 Rroxscaffold_5G00368290 Rroxscaffold_7G00212540
rosa_rugosa Rorug01G0132700.1 Rorug01G0132800.1 Rorug01G0132900.1 Rorug01G0133000.1 Rorug01G0133100.1 Rorug01G0133200.1 Rorug01G0167200 Rorug01G0471200 Rorug02G0461800 Rorug02G0463400 Rorug02G0463500 Rorug02G0463600 Rorug02G0463700 Rorug02G0463700 Rorug02G0463700 Rorug02G0465500 Rorug02G0465800 Rorug02G0465900.1 Rorug02G0466000 Rorug02G0466100 Rorug02G0466200 Rorug02G0466300 Rorug02G0466600 Rorug02G0475900 Rorug04G0200800 Rorug04G0201000 Rorug04G0201100 Rorug04G0384700 Rorug05G0000500 Rorug05G0257600 Rorug05G0257600 Rorug05G0263300 Rorug05G0263700 Rorug05G0537100 Rorug05G0579200 Rorug05G0579200 Rorug07G0155500 Rorug07G0163100 Rorug07G0283400 Rorug07G0284800 Rorug07G0285400
rosa_samantha Rh1AG184700 Rh1BG152200 Rh1DG184100 Rh2AG024000 Rh2AG525800 Rh2AG529100 Rh2AG531600 Rh2AG531800 Rh2AG532600 Rh2AG532700 Rh2AG542500 Rh2BG024600 Rh2BG540500 Rh2BG543000 Rh2BG546000 Rh2BG546100 Rh2BG546500 Rh2BG555700 Rh2CG024700 Rh2CG510500 Rh2CG513400 Rh2CG515800 Rh2CG515900 Rh2CG516300 Rh2CG516400 Rh2CG525100 Rh2CG525900 Rh2DG549000 Rh2DG551900 Rh2DG554300 Rh2DG554500 Rh2DG555100 Rh2DG564800 Rh2DG565100 Rh4AG174400 Rh4AG258000 Rh4BG263600 Rh4CG274800 Rh4DG170100 Rh4DG259200 Rh4DG259500 Rh5AG094500 Rh5AG159500 Rh5AG330300 Rh5AG335300 Rh5AG335400 Rh5AG335800 Rh5BG090700 Rh5BG159000 Rh5BG341000 Rh5BG344600 Rh5BG344800 Rh5BG345200 Rh5CG173200 Rh5CG372600 Rh5CG372700 Rh5CG373100 Rh5DG090200 Rh5DG159000 Rh5DG353800 Rh5DG357700 Rh5DG357900 Rh5DG358300 Rh6AG053400 Rh7AG176500 Rh7AG301900 Rh7AG439800 Rh7BG294700 Rh7BG412800 Rh7CG185600 Rh7CG320600 Rh7CG460400 Rh7CG460500 Rh7CG460900 Rh7CG461300 Rh7DG179500 Rh7DG303400 Rh7DG429500 Rh7DG429600
rosa_wichuraiana Rw0G019480 Rw1G012510 Rw1G015180 Rw2G001890 Rw2G043550 Rw2G043740 Rw2G043960 Rw2G043970 Rw2G044020 Rw2G044030 Rw2G044080 Rw2G044100 Rw2G044850 Rw2G044910 Rw4G014610 Rw4G022270 Rw4G022280 Rw4G022310 Rw5G008250 Rw5G014230 Rw5G031190 Rw5G031640 Rw5G031650 Rw5G031680 Rw6G004800 Rw7G015520 Rw7G025750 Rw7G036370 Rw7G036390 Rw7G036410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 336
AccB1I GGYRCC 1 cut(s) 118
AccI GTMKAC 1 cut(s) 66
AcsI RAATTY 1 cut(s) 472
AcuI CTGAAG 2 cut(s) 266, 689
AcyI GRCGYC 1 cut(s) 119
AfaI GTAC 2 cut(s) 387, 596
AfiI CCNNNNNNNGG 3 cut(s) 490, 505, 751
AgsI TTSAA 5 cut(s) 229, 319, 468, 617, 767
AjnI CCWGG 1 cut(s) 744
AleI CACNNNNGTG 1 cut(s) 179
AluBI AGCT 7 cut(s) 225, 232, 554, 602, 691, 703, 722
AluI AGCT 7 cut(s) 225, 232, 554, 602, 691, 703, 722
ApoI RAATTY 1 cut(s) 472
AspLEI GCGC 2 cut(s) 121, 269
AsuHPI GGTGA 2 cut(s) 76, 527
AsuNHI GCTAGC 1 cut(s) 550
BaeGI GKGCMC 1 cut(s) 427
BanI GGYRCC 1 cut(s) 118
BccI CCATC 2 cut(s) 13, 284
BceAI ACGGC 1 cut(s) 254
BciT130I CCWGG 1 cut(s) 746
BciVI GTATCC 2 cut(s) 502, 752
BfaI CTAG 1 cut(s) 551
BfoI RGCGCY 1 cut(s) 122
BfuI GTATCC 2 cut(s) 502, 752
BmcAI AGTACT 1 cut(s) 596
Bme1390I CCNGG 1 cut(s) 746
BmiI GGNNCC 1 cut(s) 120
BmrFI CCNGG 1 cut(s) 746
BmtI GCTAGC 1 cut(s) 554
BplI GAGNNNNNCTC 2 cut(s) 372, 404
BpmI CTGGAG 1 cut(s) 767
BpuEI CTTGAG 1 cut(s) 680
BsaHI GRCGYC 1 cut(s) 119
BsaJI CCNNGG 3 cut(s) 14, 88, 217
BsaXI ACNNNNNCTCC 2 cut(s) 746, 776
Bsc4I CCNNNNNNNGG 3 cut(s) 490, 505, 751
Bse118I RCCGGY 1 cut(s) 31
Bse1I ACTGG 4 cut(s) 181, 432, 517, 539
Bse3DI GCAATG 1 cut(s) 59
BseBI CCWGG 1 cut(s) 746
BseDI CCNNGG 3 cut(s) 14, 88, 217
BseGI GGATG 2 cut(s) 24, 688
BseLI CCNNNNNNNGG 3 cut(s) 490, 505, 751
BseMI GCAATG 1 cut(s) 59
BseMII CTCAG 2 cut(s) 612, 690
BseNI ACTGG 4 cut(s) 181, 432, 517, 539
BseSI GKGCMC 1 cut(s) 427
BsgI GTGCAG 1 cut(s) 44
BshNI GGYRCC 1 cut(s) 118
BsiSI CCGG 1 cut(s) 32
BslI CCNNNNNNNGG 3 cut(s) 490, 505, 751
BsmI GAATGC 1 cut(s) 411
Bsp1286I GDGCHC 1 cut(s) 427
BspCNI CTCAG 2 cut(s) 611, 691
BspLI GGNNCC 1 cut(s) 120
BspOI GCTAGC 1 cut(s) 554
BspQI GCTCTTC 1 cut(s) 117
BspT107I GGYRCC 1 cut(s) 118
BsrDI GCAATG 1 cut(s) 59
BsrFI RCCGGY 1 cut(s) 31
BsrI ACTGG 4 cut(s) 181, 432, 517, 539
BssAI RCCGGY 1 cut(s) 31
BssECI CCNNGG 3 cut(s) 14, 88, 217
BssNI GRCGYC 1 cut(s) 119
BssT1I CCWWGG 2 cut(s) 14, 88
Bst2UI CCWGG 1 cut(s) 746
Bst4CI ACNGT 1 cut(s) 62
Bst6I CTCTTC 1 cut(s) 117
BstACI GRCGYC 1 cut(s) 119
BstC8I GCNNGC 1 cut(s) 552
BstDEI CTNAG 2 cut(s) 598, 699
BstDSI CCRYGG 1 cut(s) 217
BstENI CCTNNNNNAGG 1 cut(s) 749
BstF5I GGATG 2 cut(s) 24, 688
BstH2I RGCGCY 1 cut(s) 122
BstHHI GCGC 2 cut(s) 121, 269
BstMWI GCNNNNNNNGC 2 cut(s) 116, 266
BstNI CCWGG 1 cut(s) 746
BstSCI CCNGG 1 cut(s) 744
BstSLI GKGCMC 1 cut(s) 427
BstXI CCANNNNNNTGG 1 cut(s) 244
BsuI GTATCC 2 cut(s) 502, 752
BtgI CCRYGG 1 cut(s) 217
BtsCI GGATG 2 cut(s) 24, 688
BtsIMutI CAGTG 2 cut(s) 174, 425
Cac8I GCNNGC 1 cut(s) 552
CfoI GCGC 2 cut(s) 121, 269
Cfr10I RCCGGY 1 cut(s) 31
Csp6I GTAC 2 cut(s) 386, 595
CviAII CATG 5 cut(s) 6, 135, 455, 557, 584
CviQI GTAC 2 cut(s) 386, 595
DdeI CTNAG 2 cut(s) 598, 699
DinI GGCGCC 1 cut(s) 120
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
Eco130I CCWWGG 2 cut(s) 14, 88
Eco57I CTGAAG 2 cut(s) 266, 689
EcoNI CCTNNNNNAGG 1 cut(s) 749
EcoRII CCWGG 1 cut(s) 744
EcoT14I CCWWGG 2 cut(s) 14, 88
EgeI GGCGCC 1 cut(s) 120
EheI GGCGCC 1 cut(s) 120
ErhI CCWWGG 2 cut(s) 14, 88
FaeI CATG 5 cut(s) 9, 138, 458, 560, 587
FatI CATG 5 cut(s) 5, 134, 454, 556, 583
FauNDI CATATG 1 cut(s) 488
FblI GTMKAC 1 cut(s) 66
FokI GGATG 2 cut(s) 31, 695
FspBI CTAG 1 cut(s) 551
GlaI GCGC 2 cut(s) 120, 268
GsuI CTGGAG 1 cut(s) 767
HaeII RGCGCY 1 cut(s) 122
HapII CCGG 1 cut(s) 32
HhaI GCGC 2 cut(s) 121, 269
Hin1I GRCGYC 1 cut(s) 119
Hin1II CATG 5 cut(s) 9, 138, 458, 560, 587
Hin6I GCGC 2 cut(s) 119, 267
HinP1I GCGC 2 cut(s) 119, 267
HincII GTYRAC 1 cut(s) 67
HindII GTYRAC 1 cut(s) 67
HindIII AAGCTT 3 cut(s) 223, 230, 720
HpaII CCGG 1 cut(s) 32
HphI GGTGA 2 cut(s) 76, 527
Hpy166II GTNNAC 1 cut(s) 67
Hpy188I TCNGA 2 cut(s) 648, 708
Hpy188III TCNNGA 2 cut(s) 659, 694
Hpy8I GTNNAC 1 cut(s) 67
HpyAV CCTTC 2 cut(s) 557, 753
HpyCH4III ACNGT 1 cut(s) 62
HpyCH4V TGCA 1 cut(s) 25
HpyF10VI GCNNNNNNNGC 2 cut(s) 116, 266
HpyF3I CTNAG 2 cut(s) 598, 699
Hsp92I GRCGYC 1 cut(s) 119
Hsp92II CATG 5 cut(s) 9, 138, 458, 560, 587
HspAI GCGC 2 cut(s) 119, 267
KasI GGCGCC 1 cut(s) 118
LguI GCTCTTC 1 cut(s) 117
LmnI GCTCC 2 cut(s) 696, 748
MaeI CTAG 1 cut(s) 551
MaeIII GTNAC 3 cut(s) 172, 187, 457
MboII GAAGA 5 cut(s) 95, 104, 247, 335, 721
MhlI GDGCHC 1 cut(s) 427
MluCI AATT 1 cut(s) 472
Mly113I GGCGCC 1 cut(s) 119
MmeI TCCRAC 1 cut(s) 289
MnlI CCTC 3 cut(s) 42, 395, 748
MseI TTAA 1 cut(s) 687
MslI CAYNNNNRTG 1 cut(s) 179
MspI CCGG 1 cut(s) 32
MspR9I CCNGG 1 cut(s) 746
Mva1269I GAATGC 1 cut(s) 411
MvaI CCWGG 1 cut(s) 746
MwoI GCNNNNNNNGC 2 cut(s) 116, 266
NarI GGCGCC 1 cut(s) 119
NdeI CATATG 1 cut(s) 488
NheI GCTAGC 1 cut(s) 550
NlaIII CATG 5 cut(s) 9, 138, 458, 560, 587
NlaIV GGNNCC 1 cut(s) 120
NmuCI GTSAC 1 cut(s) 172
OliI CACNNNNGTG 1 cut(s) 179
PciSI GCTCTTC 1 cut(s) 117
PctI GAATGC 1 cut(s) 411
PfoI TCCNGGA 1 cut(s) 744
PluTI GGCGCC 1 cut(s) 122
PsiI TTATAA 1 cut(s) 336
Psp6I CCWGG 1 cut(s) 744
PspGI CCWGG 1 cut(s) 744
PspN4I GGNNCC 1 cut(s) 120
RsaI GTAC 2 cut(s) 387, 596
RsaNI GTAC 2 cut(s) 386, 595
RseI CAYNNNNRTG 1 cut(s) 179
SalI GTCGAC 1 cut(s) 65
SapI GCTCTTC 1 cut(s) 117
SaqAI TTAA 1 cut(s) 687
ScaI AGTACT 1 cut(s) 596
ScrFI CCNGG 1 cut(s) 746
SduI GDGCHC 1 cut(s) 427
SfoI GGCGCC 1 cut(s) 120
SmiMI CAYNNNNRTG 1 cut(s) 179
SmlI CTYRAG 1 cut(s) 659
SmoI CTYRAG 1 cut(s) 659
Sse9I AATT 1 cut(s) 472
SspDI GGCGCC 1 cut(s) 118
SspMI CTAG 1 cut(s) 551
StyD4I CCNGG 1 cut(s) 744
StyI CCWWGG 2 cut(s) 14, 88
TaaI ACNGT 1 cut(s) 62
TaqI TCGA 2 cut(s) 66, 604
TasI AATT 1 cut(s) 472
TatI WGTACW 2 cut(s) 385, 594
Tru1I TTAA 1 cut(s) 687
Tru9I TTAA 1 cut(s) 687
TscAI CASTG 2 cut(s) 181, 432
TseFI GTSAC 1 cut(s) 172
Tsp45I GTSAC 1 cut(s) 172
TspDTI ATGAA 3 cut(s) 116, 191, 263
TspGWI ACGGA 2 cut(s) 234, 695
TspRI CASTG 2 cut(s) 181, 432
XagI CCTNNNNNAGG 1 cut(s) 749
XapI RAATTY 1 cut(s) 472
XmiI GTMKAC 1 cut(s) 66
XspI CTAG 1 cut(s) 551
ZrmI AGTACT 1 cut(s) 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.