Prupe.3G163900_v2.0.a1

Protein GAMETE EXPRESSED

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Reverse (-)
18315139 .. 18317383
2245 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G163900.1

Sequence Viewer

Length: 1758 bp
ATGGATCACCTTCGTTTTCTTCTGGCTCTGCTAATTATAATATCGGCTTCATCCAACTGTCACTCGTGGGGTTGGTTCTCTTCAGAAGAGACTTCCTCTAATGAGAACCCTTCTGGTTCGGTTGGTAAATTCTCCATGGAAGGTGTTAATGACCAGAAGGGGGTCAGGCTAGTTGAAAATGCTAAGGCGAAATTGGTTGGTTCAGACTCTTGTTGGAAAAATGCTTATCGGCATCTCTTTTCTGGGTGCTCGGAGATTTTCGCTGTCGAAGAGAAGCGGTCGAGATTTGCTTGGCATCTTAGTGATTGCTTTCAGAAGGACTCTGGCAGGCCTCCTTTTCCTTCATGTGACGCAAAATCTGTCATGTATAAATGCCTGAAAAGTTTGAATGACTATGAGCATAAGGTCTATCTGGAATTCTACCTTGAGACCAATTCAATCTGCCATCAGTTACAGGCTCGAGTATTTAAGCATGAAACAGAGAGACTGGTGAATGAACTTAAAAATTCAGCCCAATATGCAGAAGGCAAGTTGGAAAAAATTGAAGAGAAGGCAGAGTATCTACTGCAGGGCTCAAACCAAATATACGAGTCTTTGAATTTGATTGATGTTCGAACACAGCAAGTTGCTCAAACTGCAAAAAATGTGGAAGATCATGTAGATGTCGTGTTGAAGCATTCGACAGCAGTTTATGAACAATCCAGGAAAATCCAAGCTTCTCAATCAGAGCTGCAAGAAGGACAAGTAGAAATGAAGAGAAACTTGAAAGATGGGATGGCAATGCTGCAAGATTCATACAGCCATTTAGGCCAAGAAATTGATAACTTAAGAAATGAGGCAGTTGAAATTGAACAGGAGATAACTAAAATTGGAGACCAAATGTCATCTAAGATGGAGAATCTGCAAAGCAAAGCAGATGATATTGGGAATATGGCTGGGGTCTCTTTGGATAAGCAACATCAGCTTCTCGATGGACAGACAACTGCTCTCAAGGATCTTCAGGTTTTAACAAAATTTCAATCTGAAGCATTAGAAGAGAGCAGGAGTACACTTCACCGGTTAGCTGAATATGGCCATAGACAACAAGAAGAGCTTCTTCAAAAGCAACAACAGCTTCAACAAGTTCATGATCACTTGATGAAAAATTCAAAGTCAATCTTGGCAGCTCAGGAATCTTTTGAATCAAAGCAAGCCAGCATGTTCATTGCATTAGACAAGTTATTCACTTTGCACAATGCTATGATGCTTGAATCGCGCTTAATCAAAGCTTTCTTTATTTACTTTATATCGATGTTTGTTATCTACATGTTCACAAGCACAAAGCAAACATACACAGTTAGACCTTGGCTATATATTGGGCTGTGTGCCACATTCATGATAGAAGTAGTGACAATTCGGTTCACCCCAATCGACATTCAACAGCAAACATGGAAAATAAACCTTTTCCGATCAACCTTTGCTGTAATTGCTTTAGCTAAGCTAATACATGCAATTTTCACATACAGGGACTATGAAGTGTTGAACAATCAGTTGTTACATACATTGATTGAGAAGGTTAATGGCATGCAAAGATACCAGAAGTTGTCATGGGAGGAAGATAGTGAATTTAACTGGTCCTCTTGGATTGACACCAACTTACAAGAAGACGTAGACAGTTCTGAAGACCCTGACTACTTAGTTCCTGAAGAAGTTGGGGAAAATTTTATCACAGCTTCAACTATAAAAGAATATGATCTCCGCCAGCGTCTTCTTCGTTGA

Protein Analysis

586

Amino Acids

67.66

Weight (kDa)

5.49

Isoelectric Point (pI)

52.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 38
AccI GTMKAC 1 cut(s) 1650
AccII CGCG 1 cut(s) 1255
AciI CCGC 2 cut(s) 277, 1738
AclWI GGATC 2 cut(s) 12, 1002
AcoI YGGCCR 1 cut(s) 1072
AcsI RAATTY 8 cut(s) 128, 416, 505, 598, 1013, 1144, 1604, 1699
AcuI CTGAAG 5 cut(s) 66, 983, 1044, 1680, 1704
AfaI GTAC 1 cut(s) 1048
AfiI CCNNNNNNNGG 1 cut(s) 160
AflII CTTAAG 1 cut(s) 826
AflIII ACRYGT 1 cut(s) 1305
AgeI ACCGGT 1 cut(s) 1056
AhdI GACNNNNNGTC 1 cut(s) 880
AjnI CCWGG 1 cut(s) 701
Alw21I GWGCWC 1 cut(s) 251
Alw26I GTCTC 5 cut(s) 83, 422, 478, 867, 946
AlwI GGATC 2 cut(s) 12, 1002
Ama87I CYCGRG 1 cut(s) 459
AoxI GGCC 3 cut(s) 329, 808, 1072
ApeKI GCWGC 3 cut(s) 730, 784, 1163
ApoI RAATTY 8 cut(s) 128, 416, 505, 598, 1013, 1144, 1604, 1699
AsiGI ACCGGT 1 cut(s) 1056
Asp700I GAANNNNTTC 1 cut(s) 1092
AspLEI GCGC 1 cut(s) 1257
AspS9I GGNCC 1 cut(s) 1614
AsuHPI GGTGA 3 cut(s) 502, 1046, 1393
AsuII TTCGAA 1 cut(s) 613
AvaI CYCGRG 1 cut(s) 459
AvaII GGWCC 1 cut(s) 1614
BalI TGGCCA 1 cut(s) 1074
BanII GRGCYC 1 cut(s) 575
BauI CACGAG 1 cut(s) 64
BbsI GAAGAC 3 cut(s) 1650, 1668, 1739
Bbv12I GWGCWC 1 cut(s) 251
BbvI GCAGC 3 cut(s) 717, 771, 1175
BccI CCATC 5 cut(s) 453, 764, 769, 886, 965
BciT130I CCWGG 1 cut(s) 703
BclI TGATCA 1 cut(s) 1129
BcoDI GTCTC 5 cut(s) 83, 422, 478, 867, 946
BfaI CTAG 1 cut(s) 170
BfmI CTRYAG 1 cut(s) 566
BfrI CTTAAG 1 cut(s) 826
BglI GCCNNNNNGGC 1 cut(s) 807
BisI GCNGC 3 cut(s) 731, 785, 1164
BlpI GCTNAGC 1 cut(s) 1476
BlsI GCNGC 3 cut(s) 732, 786, 1165
Bme1390I CCNGG 1 cut(s) 703
Bme18I GGWCC 1 cut(s) 1614
BmeRI GACNNNNNGTC 1 cut(s) 880
BmeT110I CYCGRG 1 cut(s) 459
BmgT120I GGNCC 1 cut(s) 1614
BmrFI CCNGG 1 cut(s) 703
BmsI GCATC 3 cut(s) 241, 304, 1233
BpiI GAAGAC 3 cut(s) 1650, 1668, 1739
BplI GAGNNNNNCTC 2 cut(s) 80, 112
Bpu10I CCTNAGC 2 cut(s) 183, 1167
Bpu1102I GCTNAGC 1 cut(s) 1476
Bpu14I TTCGAA 1 cut(s) 613
BpuEI CTTGAG 2 cut(s) 446, 974
Bsa29I ATCGAT 1 cut(s) 1289
BsaI GGTCTC 3 cut(s) 422, 867, 946
BsaJI CCNNGG 2 cut(s) 135, 1343
BsaWI WCCGGW 1 cut(s) 1056
Bsc4I CCNNNNNNNGG 1 cut(s) 160
Bse118I RCCGGY 1 cut(s) 1056
Bse1I ACTGG 2 cut(s) 492, 1616
Bse3DI GCAATG 2 cut(s) 786, 1203
BseBI CCWGG 1 cut(s) 703
BseCI ATCGAT 1 cut(s) 1289
BseDI CCNNGG 2 cut(s) 135, 1343
BseGI GGATG 2 cut(s) 50, 780
BseLI CCNNNNNNNGG 1 cut(s) 160
BseMI GCAATG 2 cut(s) 786, 1203
BseMII CTCAG 1 cut(s) 1181
BseNI ACTGG 2 cut(s) 492, 1616
BseXI GCAGC 3 cut(s) 717, 771, 1175
BseYI CCCAGC 1 cut(s) 935
Bsh1236I CGCG 1 cut(s) 1255
Bsh1285I CGRYCG 1 cut(s) 281
BshFI GGCC 3 cut(s) 331, 810, 1074
BshTI ACCGGT 1 cut(s) 1056
BshVI ATCGAT 1 cut(s) 1289
BsiEI CGRYCG 1 cut(s) 281
BsiHKAI GWGCWC 1 cut(s) 251
BsiHKCI CYCGRG 1 cut(s) 459
BsiSI CCGG 1 cut(s) 1057
BslFI GGGAC 1 cut(s) 1520
BslI CCNNNNNNNGG 1 cut(s) 160
BsmAI GTCTC 5 cut(s) 83, 422, 478, 867, 946
BsmFI GGGAC 1 cut(s) 1520
BsmI GAATGC 1 cut(s) 676
BsnI GGCC 3 cut(s) 331, 810, 1074
Bso31I GGTCTC 3 cut(s) 422, 867, 946
BsoBI CYCGRG 1 cut(s) 459
Bsp119I TTCGAA 1 cut(s) 613
Bsp1286I GDGCHC 2 cut(s) 251, 575
Bsp143I GATC 6 cut(s) 4, 652, 994, 1129, 1448, 1732
Bsp1720I GCTNAGC 1 cut(s) 1476
Bsp19I CCATGG 1 cut(s) 135
BspACI CCGC 2 cut(s) 277, 1738
BspANI GGCC 3 cut(s) 331, 810, 1074
BspCNI CTCAG 1 cut(s) 1180
BspDI ATCGAT 1 cut(s) 1289
BspFNI CGCG 1 cut(s) 1255
BspHI TCATGA 2 cut(s) 1126, 1374
BspMAI CTGCAG 1 cut(s) 570
BspPI GGATC 2 cut(s) 12, 1002
BspQI GCTCTTC 1 cut(s) 1083
BspT104I TTCGAA 1 cut(s) 613
BspTI CTTAAG 1 cut(s) 826
BspTNI GGTCTC 3 cut(s) 422, 867, 946
BsrDI GCAATG 2 cut(s) 786, 1203
BsrFI RCCGGY 1 cut(s) 1056
BsrI ACTGG 2 cut(s) 492, 1616
BssAI RCCGGY 1 cut(s) 1056
BssECI CCNNGG 2 cut(s) 135, 1343
BssMI GATC 6 cut(s) 4, 652, 994, 1129, 1448, 1732
BssSI CACGAG 1 cut(s) 64
BssT1I CCWWGG 2 cut(s) 135, 1343
Bst2BI CACGAG 1 cut(s) 64
Bst2UI CCWGG 1 cut(s) 703
Bst4CI ACNGT 3 cut(s) 59, 1336, 1655
Bst6I CTCTTC 7 cut(s) 81, 85, 264, 540, 749, 1029, 1083
BstAFI CTTAAG 1 cut(s) 826
BstBI TTCGAA 1 cut(s) 613
BstC8I GCNNGC 5 cut(s) 329, 1191, 1195, 1565, 1742
BstDEI CTNAG 6 cut(s) 183, 299, 888, 1167, 1476, 1675
BstDSI CCRYGG 1 cut(s) 135
BstF5I GGATG 2 cut(s) 50, 780
BstFNI CGCG 1 cut(s) 1255
BstHHI GCGC 1 cut(s) 1257
BstKTI GATC 6 cut(s) 7, 655, 997, 1132, 1451, 1735
BstMAI GTCTC 5 cut(s) 83, 422, 478, 867, 946
BstMBI GATC 6 cut(s) 4, 652, 994, 1129, 1448, 1732
BstMCI CGRYCG 1 cut(s) 281
BstMWI GCNNNNNNNGC 7 cut(s) 518, 635, 807, 961, 1111, 1252, 1466
BstNI CCWGG 1 cut(s) 703
BstNSI RCATGY 4 cut(s) 1201, 1309, 1490, 1567
BstSCI CCNGG 1 cut(s) 701
BstSFI CTRYAG 1 cut(s) 566
BstUI CGCG 1 cut(s) 1255
BstV1I GCAGC 3 cut(s) 717, 771, 1175
BstV2I GAAGAC 3 cut(s) 1650, 1668, 1739
BstX2I RGATCY 1 cut(s) 994
BstYI RGATCY 1 cut(s) 994
Bsu15I ATCGAT 1 cut(s) 1289
BsuRI GGCC 3 cut(s) 331, 810, 1074
BsuTUI ATCGAT 1 cut(s) 1289
BtgI CCRYGG 1 cut(s) 135
BtsCI GGATG 2 cut(s) 50, 780
Cac8I GCNNGC 5 cut(s) 329, 1191, 1195, 1565, 1742
CciI TCATGA 2 cut(s) 1126, 1374
CfoI GCGC 1 cut(s) 1257
Cfr10I RCCGGY 1 cut(s) 1056
Cfr13I GGNCC 1 cut(s) 1614
ClaI ATCGAT 1 cut(s) 1289
CseI GACGC 2 cut(s) 359, 1733
Csp6I GTAC 1 cut(s) 1047
CspAI ACCGGT 1 cut(s) 1056
CspCI CAANNNNNGTGG 2 cut(s) 627, 662
CviQI GTAC 1 cut(s) 1047
DdeI CTNAG 6 cut(s) 183, 299, 888, 1167, 1476, 1675
DpnI GATC 6 cut(s) 6, 654, 996, 1131, 1450, 1734
DpnII GATC 6 cut(s) 4, 652, 994, 1129, 1448, 1732
DriI GACNNNNNGTC 1 cut(s) 880
EaeI YGGCCR 1 cut(s) 1072
Eam1104I CTCTTC 7 cut(s) 81, 85, 264, 540, 749, 1029, 1083
Eam1105I GACNNNNNGTC 1 cut(s) 880
EarI CTCTTC 7 cut(s) 81, 85, 264, 540, 749, 1029, 1083
EciI GGCGGA 1 cut(s) 1727
Eco130I CCWWGG 2 cut(s) 135, 1343
Eco147I AGGCCT 1 cut(s) 331
Eco24I GRGCYC 1 cut(s) 575
Eco31I GGTCTC 3 cut(s) 422, 867, 946
Eco47I GGWCC 1 cut(s) 1614
Eco57I CTGAAG 5 cut(s) 66, 983, 1044, 1680, 1704
Eco88I CYCGRG 1 cut(s) 459
EcoRI GAATTC 1 cut(s) 416
EcoRII CCWGG 1 cut(s) 701
EcoT14I CCWWGG 2 cut(s) 135, 1343
EcoT38I GRGCYC 1 cut(s) 575
ErhI CCWWGG 2 cut(s) 135, 1343
FalI AAGNNNNNCTT 8 cut(s) 746, 778, 1077, 1109, 1080, 1112, 1142, 1174
FaqI GGGAC 1 cut(s) 1520
FbaI TGATCA 1 cut(s) 1129
FblI GTMKAC 1 cut(s) 1650
Fnu4HI GCNGC 3 cut(s) 731, 785, 1164
FokI GGATG 2 cut(s) 37, 787
FriOI GRGCYC 1 cut(s) 575
Fsp4HI GCNGC 3 cut(s) 731, 785, 1164
FspBI CTAG 1 cut(s) 170
GlaI GCGC 1 cut(s) 1256
GluI GCNGC 3 cut(s) 731, 785, 1164
GsaI CCCAGC 1 cut(s) 939
HaeIII GGCC 3 cut(s) 331, 810, 1074
HapII CCGG 1 cut(s) 1057
HgaI GACGC 2 cut(s) 359, 1733
HhaI GCGC 1 cut(s) 1257
Hin6I GCGC 1 cut(s) 1255
HinP1I GCGC 1 cut(s) 1255
HindIII AAGCTT 2 cut(s) 714, 1266
HinfI GANTC 8 cut(s) 206, 320, 590, 791, 898, 1172, 1181, 1250
HpaII CCGG 1 cut(s) 1057
HphI GGTGA 3 cut(s) 502, 1046, 1393
Hpy166II GTNNAC 4 cut(s) 1049, 1311, 1401, 1651
Hpy188I TCNGA 8 cut(s) 85, 205, 253, 315, 727, 1024, 1448, 1660
Hpy188III TCNNGA 7 cut(s) 282, 413, 968, 1127, 1169, 1375, 1682
Hpy8I GTNNAC 4 cut(s) 1049, 1311, 1401, 1651
HpyCH4III ACNGT 3 cut(s) 59, 1336, 1655
HpyCH4IV ACGT 1 cut(s) 1647
HpyF10VI GCNNNNNNNGC 7 cut(s) 518, 635, 807, 961, 1111, 1252, 1466
HpyF3I CTNAG 6 cut(s) 183, 299, 888, 1167, 1476, 1675
HpySE526I ACGT 1 cut(s) 1647
HspAI GCGC 1 cut(s) 1255
Ksp22I TGATCA 1 cut(s) 1129
Kzo9I GATC 6 cut(s) 4, 652, 994, 1129, 1448, 1732
LguI GCTCTTC 1 cut(s) 1083
Lsp1109I GCAGC 3 cut(s) 717, 771, 1175
LweI GCATC 3 cut(s) 241, 304, 1233
MaeI CTAG 1 cut(s) 170
MaeII ACGT 1 cut(s) 1647
MaeIII GTNAC 5 cut(s) 59, 347, 450, 1387, 1533
MalI GATC 6 cut(s) 6, 654, 996, 1131, 1450, 1734
MboI GATC 6 cut(s) 4, 652, 994, 1129, 1448, 1732
MflI RGATCY 1 cut(s) 994
MhlI GDGCHC 2 cut(s) 251, 575
MlsI TGGCCA 1 cut(s) 1074
MluNI TGGCCA 1 cut(s) 1074
MlyI GAGTC 3 cut(s) 200, 314, 599
MmeI TCCRAC 3 cut(s) 78, 194, 513
MnlI CCTC 5 cut(s) 106, 342, 829, 1585, 1627
Mox20I TGGCCA 1 cut(s) 1074
MroXI GAANNNNTTC 1 cut(s) 1092
MscI TGGCCA 1 cut(s) 1074
MseI TTAA 8 cut(s) 147, 468, 501, 827, 1007, 1259, 1557, 1608
MslI CAYNNNNRTG 3 cut(s) 300, 660, 1373
Msp20I TGGCCA 1 cut(s) 1074
MspCI CTTAAG 1 cut(s) 826
MspI CCGG 1 cut(s) 1057
MspR9I CCNGG 1 cut(s) 703
Mva1269I GAATGC 1 cut(s) 676
MvaI CCWGG 1 cut(s) 703
MvnI CGCG 1 cut(s) 1255
MwoI GCNNNNNNNGC 7 cut(s) 518, 635, 807, 961, 1111, 1252, 1466
NcoI CCATGG 1 cut(s) 135
NdeII GATC 6 cut(s) 4, 652, 994, 1129, 1448, 1732
NmuCI GTSAC 3 cut(s) 59, 347, 1387
NspI RCATGY 4 cut(s) 1201, 1309, 1490, 1567
NspV TTCGAA 1 cut(s) 613
PaeI GCATGC 1 cut(s) 1567
PaeR7I CTCGAG 1 cut(s) 459
PagI TCATGA 2 cut(s) 1126, 1374
PceI AGGCCT 1 cut(s) 331
PciI ACATGT 1 cut(s) 1305
PciSI GCTCTTC 1 cut(s) 1083
PctI GAATGC 1 cut(s) 676
PdmI GAANNNNTTC 1 cut(s) 1092
PfeI GAWTC 5 cut(s) 791, 898, 1172, 1181, 1250
PfoI TCCNGGA 1 cut(s) 701
PinAI ACCGGT 1 cut(s) 1056
PkrI GCNGC 3 cut(s) 732, 786, 1165
PleI GAGTC 3 cut(s) 200, 314, 598
PpsI GAGTC 3 cut(s) 200, 314, 598
PscI ACATGT 1 cut(s) 1305
PsiI TTATAA 1 cut(s) 38
Psp6I CCWGG 1 cut(s) 701
PspFI CCCAGC 1 cut(s) 935
PspGI CCWGG 1 cut(s) 701
PspPI GGNCC 1 cut(s) 1614
PspXI VCTCGAGB 1 cut(s) 459
PstI CTGCAG 1 cut(s) 570
PsuI RGATCY 1 cut(s) 994
RsaI GTAC 1 cut(s) 1048
RsaNI GTAC 1 cut(s) 1047
RseI CAYNNNNRTG 3 cut(s) 300, 660, 1373
SapI GCTCTTC 1 cut(s) 1083
SaqAI TTAA 8 cut(s) 147, 468, 501, 827, 1007, 1259, 1557, 1608
SatI GCNGC 3 cut(s) 731, 785, 1164
Sau3AI GATC 6 cut(s) 4, 652, 994, 1129, 1448, 1732
Sau96I GGNCC 1 cut(s) 1614
SchI GAGTC 3 cut(s) 200, 314, 599
ScrFI CCNGG 1 cut(s) 703
SduI GDGCHC 2 cut(s) 251, 575
SfaNI GCATC 3 cut(s) 241, 304, 1233
SfcI CTRYAG 1 cut(s) 566
Sfr274I CTCGAG 1 cut(s) 459
SfuI TTCGAA 1 cut(s) 613
SinI GGWCC 1 cut(s) 1614
SlaI CTCGAG 1 cut(s) 459
SmiMI CAYNNNNRTG 3 cut(s) 300, 660, 1373
SmlI CTYRAG 4 cut(s) 425, 459, 826, 989
SmoI CTYRAG 4 cut(s) 425, 459, 826, 989
SphI GCATGC 1 cut(s) 1567
SseBI AGGCCT 1 cut(s) 331
SsiI CCGC 2 cut(s) 277, 1738
SspMI CTAG 1 cut(s) 170
StuI AGGCCT 1 cut(s) 331
StyD4I CCNGG 1 cut(s) 701
StyI CCWWGG 2 cut(s) 135, 1343
TaaI ACNGT 3 cut(s) 59, 1336, 1655
TaiI ACGT 1 cut(s) 1650
TaqI TCGA 8 cut(s) 267, 281, 460, 613, 680, 969, 1289, 1410
TatI WGTACW 1 cut(s) 1046
TfiI GAWTC 5 cut(s) 791, 898, 1172, 1181, 1250
Tru1I TTAA 8 cut(s) 147, 468, 501, 827, 1007, 1259, 1557, 1608
Tru9I TTAA 8 cut(s) 147, 468, 501, 827, 1007, 1259, 1557, 1608
TseFI GTSAC 3 cut(s) 59, 347, 1387
TseI GCWGC 3 cut(s) 730, 784, 1163
Tsp45I GTSAC 3 cut(s) 59, 347, 1387
Vha464I CTTAAG 1 cut(s) 826
VpaK11BI GGWCC 1 cut(s) 1614
XapI RAATTY 8 cut(s) 128, 416, 505, 598, 1013, 1144, 1604, 1699
XceI RCATGY 4 cut(s) 1201, 1309, 1490, 1567
XhoI CTCGAG 1 cut(s) 459
XmiI GTMKAC 1 cut(s) 1650
XmnI GAANNNNTTC 1 cut(s) 1092
XspI CTAG 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.