Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001722

Physical Location & Seq

Genomic Coordinates Reverse (-)

12549094 .. 12549896

Gene Structure 803 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG066400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGTCGTCTAGGATGGAGAATCTGCAGGTCAAAGCAGATGACATTAGGAATATGGCAGGGCTCTCTTTGGACAAGCAAAAGCAGCTTCTAGATGGAAAAACAACAGCTCTCAAGGAGCTCGACTTTTTAACCAAATTTCAATCCGAGGCACTAGAAGAGAGCATGAAAACCCTACAACGGTTAACTGAATATGGTCACAGACAACAAGAAGAGCTTCTTCAGAAGCAACTACAGCTTCAAAAAGTTCATGATCACCTGATGGAAAACTCAAAGTCAATGTTGGAAGCACAGGAATCTTTTGAATCAAAGCAAGCCAGCATGTTCACCGCATTAGACAAGCTATTGGCTTTGCACAATGCTATGCTGCTTGAATCACGGTTGATCAAAGCTTTCTTTATTTACTCTATATCAATCTTTGCTATCTACATGTTCACAAGCACAAAGCGAACATACATAGTTAGACCTCGGCTATATATCGGGCTGTGTTTGACTCTCTTAGTAGAAGTAGCAATACTTCGGCTCACAGAGCATGATATTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0007275 GO:0008150 GO:0009553 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0016020 GO:0016021 GO:0022414 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0042802 GO:0044425 GO:0044459 GO:0044464 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

180

Amino Acids

20.93

Weight (kDa)

6.53

Isoelectric Point (pI)

54.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490
fragaria_vesca	FvH4_6g33230 FvH4_6g41730
malus_domestica	MD09G1119800.v1.1 MD09G1266100.v1.1 MD17G1110600.v1.1
prunus_persica	Prupe.3G163900_v2.0.a1 Prupe.3G204300_v2.0.a1 Prupe.3G204300_v2.0.a1
pyrus_communis	pycom07g05510
rosa_chinensis	RchiOBHm_Chr2g0139401 RchiOBHm_Chr2g0142951 RchiOBHm_Chr2g0157531
rosa_laevigata	RLG00000020000 RLG00000020995
rosa_multiflora	Rmu_co8048568.1_g000001 Rmu_sc0000083.1_g000018 Rmu_sc0002277.1_g000037 Rmu_sc0036081.1_g000001 Rmu_sc0036082.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092150 Rroxscaffold_2G00102200 Rroxscaffold_2G00147380
rosa_rugosa	Rorug02G0377400 Rorug02G0461800
rosa_samantha	Rh1CG268300 Rh2AG430400 Rh2AG525900 Rh2BG439400 Rh2BG540600 Rh2CG416100 Rh2CG510600 Rh2DG449400 Rh2DG549100 Rh4BG060600 Rh4CG066400 Rh5DG444200 Rh7DG175700
rosa_wichuraiana	Rw2G035150 Rw2G043560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	16
AciI	CCGC	1 cut(s)	327
AcsI	RAATTY	1 cut(s)	134
AcuI	CTGAAG	1 cut(s)	203
AfiI	CCNNNNNNNGG	1 cut(s)	177
AflIII	ACRYGT	1 cut(s)	426
AgsI	TTSAA	5 cut(s)	140, 239, 302, 371, 539
AluBI	AGCT	7 cut(s)	85, 107, 118, 214, 235, 340, 389
AluI	AGCT	7 cut(s)	85, 107, 118, 214, 235, 340, 389
Alw21I	GWGCWC	1 cut(s)	120
ApeKI	GCWGC	2 cut(s)	82, 364
ApoI	RAATTY	1 cut(s)	134
Asp700I	GAANNNNTTC	1 cut(s)	213
AsuHPI	GGTGA	2 cut(s)	245, 316
BanII	GRGCYC	2 cut(s)	63, 120
BarI	GAAGNNNNNNTAC	4 cut(s)	495, 498, 527, 530
Bbv12I	GWGCWC	1 cut(s)	120
BbvI	GCAGC	2 cut(s)	94, 351
BccI	CCATC	3 cut(s)	7, 86, 253
BclI	TGATCA	2 cut(s)	250, 381
BfaI	CTAG	3 cut(s)	9, 89, 152
BfmI	CTRYAG	2 cut(s)	23, 230
BfuAI	ACCTGC	1 cut(s)	16
BisI	GCNGC	2 cut(s)	83, 365
BlsI	GCNGC	2 cut(s)	84, 366
BpuEI	CTTGAG	1 cut(s)	95
BsaJI	CCNNGG	2 cut(s)	144, 464
Bsc4I	CCNNNNNNNGG	1 cut(s)	177
BseDI	CCNNGG	2 cut(s)	144, 464
BseGI	GGATG	1 cut(s)	18
BseLI	CCNNNNNNNGG	1 cut(s)	177
BseXI	GCAGC	2 cut(s)	94, 351
BsiHKAI	GWGCWC	1 cut(s)	120
BslI	CCNNNNNNNGG	1 cut(s)	177
Bsp1286I	GDGCHC	2 cut(s)	63, 120
Bsp143I	GATC	2 cut(s)	250, 381
BspACI	CCGC	1 cut(s)	327
BspHI	TCATGA	1 cut(s)	247
BspMAI	CTGCAG	1 cut(s)	27
BspMI	ACCTGC	1 cut(s)	16
BspQI	GCTCTTC	1 cut(s)	204
BssECI	CCNNGG	2 cut(s)	144, 464
BssMI	GATC	2 cut(s)	250, 381
Bst4CI	ACNGT	2 cut(s)	180, 378
Bst6I	CTCTTC	2 cut(s)	150, 204
BstC8I	GCNNGC	2 cut(s)	312, 316
BstDEI	CTNAG	1 cut(s)	496
BstF5I	GGATG	1 cut(s)	18
BstKTI	GATC	2 cut(s)	253, 384
BstMBI	GATC	2 cut(s)	250, 381
BstMWI	GCNNNNNNNGC	3 cut(s)	82, 232, 526
BstNSI	RCATGY	2 cut(s)	322, 430
BstSFI	CTRYAG	2 cut(s)	23, 230
BstV1I	GCAGC	2 cut(s)	94, 351
BtsCI	GGATG	1 cut(s)	18
BveI	ACCTGC	1 cut(s)	16
Cac8I	GCNNGC	2 cut(s)	312, 316
CciI	TCATGA	1 cut(s)	247
CviAII	CATG	5 cut(s)	163, 248, 319, 427, 530
DdeI	CTNAG	1 cut(s)	496
DpnI	GATC	2 cut(s)	252, 383
DpnII	GATC	2 cut(s)	250, 381
Eam1104I	CTCTTC	2 cut(s)	150, 204
EarI	CTCTTC	2 cut(s)	150, 204
Ecl136II	GAGCTC	1 cut(s)	118
Eco24I	GRGCYC	2 cut(s)	63, 120
Eco53kI	GAGCTC	1 cut(s)	118
Eco57I	CTGAAG	1 cut(s)	203
EcoICRI	GAGCTC	1 cut(s)	118
EcoT38I	GRGCYC	2 cut(s)	63, 120
FaeI	CATG	5 cut(s)	166, 251, 322, 430, 533
FalI	AAGNNNNNCTT	4 cut(s)	198, 230, 201, 233
FatI	CATG	5 cut(s)	162, 247, 318, 426, 529
FbaI	TGATCA	2 cut(s)	250, 381
Fnu4HI	GCNGC	2 cut(s)	83, 365
FokI	GGATG	1 cut(s)	25
FriOI	GRGCYC	2 cut(s)	63, 120
Fsp4HI	GCNGC	2 cut(s)	83, 365
FspBI	CTAG	3 cut(s)	9, 89, 152
GluI	GCNGC	2 cut(s)	83, 365
Hin1II	CATG	5 cut(s)	166, 251, 322, 430, 533
HincII	GTYRAC	1 cut(s)	183
HindII	GTYRAC	1 cut(s)	183
HindIII	AAGCTT	1 cut(s)	387
HinfI	GANTC	5 cut(s)	19, 293, 302, 371, 490
HpaI	GTTAAC	1 cut(s)	183
HphI	GGTGA	2 cut(s)	245, 316
Hpy166II	GTNNAC	3 cut(s)	183, 324, 432
Hpy188I	TCNGA	2 cut(s)	145, 222
Hpy188III	TCNNGA	2 cut(s)	89, 248
Hpy8I	GTNNAC	3 cut(s)	183, 324, 432
HpyCH4III	ACNGT	2 cut(s)	180, 378
HpyCH4V	TGCA	2 cut(s)	25, 352
HpyF10VI	GCNNNNNNNGC	3 cut(s)	82, 232, 526
HpyF3I	CTNAG	1 cut(s)	496
Hsp92II	CATG	5 cut(s)	166, 251, 322, 430, 533
Ksp22I	TGATCA	2 cut(s)	250, 381
KspAI	GTTAAC	1 cut(s)	183
Kzo9I	GATC	2 cut(s)	250, 381
LguI	GCTCTTC	1 cut(s)	204
LmnI	GCTCC	1 cut(s)	115
LpnPI	CCDG	5 cut(s)	11, 42, 269, 275, 328
Lsp1109I	GCAGC	2 cut(s)	94, 351
MaeI	CTAG	3 cut(s)	9, 89, 152
MaeIII	GTNAC	1 cut(s)	194
MalI	GATC	2 cut(s)	252, 383
MboI	GATC	2 cut(s)	250, 381
MboII	GAAGA	3 cut(s)	167, 209, 221
MhlI	GDGCHC	2 cut(s)	63, 120
MluCI	AATT	1 cut(s)	134
MlyI	GAGTC	1 cut(s)	484
MmeI	TCCRAC	1 cut(s)	261
MnlI	CCTC	2 cut(s)	139, 474
MroXI	GAANNNNTTC	1 cut(s)	213
MseI	TTAA	2 cut(s)	128, 182
MwoI	GCNNNNNNNGC	3 cut(s)	82, 232, 526
NdeII	GATC	2 cut(s)	250, 381
NlaIII	CATG	5 cut(s)	166, 251, 322, 430, 533
NmeAIII	GCCGAG	1 cut(s)	445
NmuCI	GTSAC	1 cut(s)	194
NspI	RCATGY	2 cut(s)	322, 430
PagI	TCATGA	1 cut(s)	247
PciI	ACATGT	1 cut(s)	426
PciSI	GCTCTTC	1 cut(s)	204
PdmI	GAANNNNTTC	1 cut(s)	213
PfeI	GAWTC	4 cut(s)	19, 293, 302, 371
PkrI	GCNGC	2 cut(s)	84, 366
PleI	GAGTC	1 cut(s)	484
PpsI	GAGTC	1 cut(s)	484
PscI	ACATGT	1 cut(s)	426
Psp124BI	GAGCTC	1 cut(s)	120
PstI	CTGCAG	1 cut(s)	27
SacI	GAGCTC	1 cut(s)	120
SapI	GCTCTTC	1 cut(s)	204
SaqAI	TTAA	2 cut(s)	128, 182
SatI	GCNGC	2 cut(s)	83, 365
Sau3AI	GATC	2 cut(s)	250, 381
SchI	GAGTC	1 cut(s)	484
SduI	GDGCHC	2 cut(s)	63, 120
SfcI	CTRYAG	2 cut(s)	23, 230
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	1 cut(s)	134
SsiI	CCGC	1 cut(s)	327
SspMI	CTAG	3 cut(s)	9, 89, 152
SstI	GAGCTC	1 cut(s)	120
TaaI	ACNGT	2 cut(s)	180, 378
TaqI	TCGA	1 cut(s)	120
TasI	AATT	1 cut(s)	134
TfiI	GAWTC	4 cut(s)	19, 293, 302, 371
Tru1I	TTAA	2 cut(s)	128, 182
Tru9I	TTAA	2 cut(s)	128, 182
TseFI	GTSAC	1 cut(s)	194
TseI	GCWGC	2 cut(s)	82, 364
Tsp45I	GTSAC	1 cut(s)	194
TspDTI	ATGAA	2 cut(s)	179, 236
XapI	RAATTY	1 cut(s)	134
XbaI	TCTAGA	1 cut(s)	88
XceI	RCATGY	2 cut(s)	322, 430
XmnI	GAANNNNTTC	1 cut(s)	213
XspI	CTAG	3 cut(s)	9, 89, 152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.