Rroxscaffold_2G00102200

Protein GAMETE EXPRESSED

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
24261391 .. 24263583
2193 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00102200.1

Sequence Viewer

Length: 1623 bp
ATGGAAGGTCATAATGATGACCCCAAGGCAATCAGACTTGTTGAAGATGCAGAGAAGAAGTTGGCAGGTCCAAACTCTTGTTGGCAAAATGCTTATCGGCATCTCTTTTCGGGGTGCTCGGAGGTCCATGCCGTTGAAGAGAAGCGCTCAAGATTTGCTTGGCATCTGAGTGATTGCTTTCAGAAGGACTCTGCAAGGCCTCCTTTTCCTTCATGTGACCCGAAATCTGCAATGTATAAATGCTTGAAAACTTTGAACGATGATCAGCACAAGGTGTATTTGGAATTCTACCTCGAAACCAACTCAATATGCCATCAGTTGCAGGCTCGCGCATTTAAGTTTGAAACAGAGAGAATTGTGAATGAACTTAAAAATTCAGCTCAGTATGCAGAAGGCAAGTTGGAATTAATTGAAGAAAAGGCAGAGCATCTACTGCAGGGGTCAAATCAAATATATGAGTCTTTGAATTCGATTGATCTTCGAACACAGCAAGTTGCTCAGACTGCACAGAATGTGGAAGATCATATAGATTTGGTGTTGAAGCATTCCGCAGCAGTTTATGAGCAATCAAGGAAAATCCAAGATTCTCAATCTGAGCTGCAAGAAGGACAAGTAGAAATGAAGAAAAATTTGAAGGAAGGAATGGCAATGTTGCAGGAATCATACAGCCATTTGGGACAAGAAATCAATAACTTGAAAAATGAAGCTGTTGAAATTGAAAAAGTGATAACCAAAGTCGGAGACCAAATGTCGTCTAGGATGGAGAATCTGCAAGTCAAGGCAGATGACATTGGGAATATGGCAGGGCTCTCTTTGGACAAGCAAAAGCAGCTTCTAGATGGACAAACAACAGCTCTCAAGGAGCTGGACTTTTTAACCAAATTTCAATCCGAGGCGCTAGAAGAGAGCAGGAAAACCCTACAACGGCTAACTGAATATGGTCACAGACAACAAGAAGAGCTTCTTCAGAAGCAACTCCAGCTTCAAAAAGTTCATGATCACCTGATGGAAAACTCAAAGTCAATGTTGGAGGCACAGGAATCTTTTGAATCAAAGCAAGCCAGCATGTTCGCCGCATTAGACAAGCTATTGGCTTTGCACAATGCTATGCTGCTTGAATCACGGTTGATCAAAGCTTTCTTTATTTACTCTATATCAATCTTTGTTATCTACATGTTCACAAGCACAAAGCGAACATACACAGTTAGACCTCGGCTATATATCGGGCTGTGTTTGACTCTCTTAGTAGAAGTAGCAATACTTCGGCTCACAGGGCATGATATTGAACAGCAAACATGGAAGATAAACCTTCTCAGGTCTCTTTTTGCAGCGACTGCTTTAGTTCAGCTAATGCATGCAATTTTCACATACAGGGACTATGAAGTATTGAATCATCAACTATTGCATACGCTGATTGAGAAGGTTAATGGAATTCAGAGATACCAGAAGTTCTCTTGGGATGAAGATAGTGATTTGAACTGGTCCTCTTGGCTGGACAGCAACTTACCAGAAGATGAAGACTGTTCTGAAGACCCTGACTACTTAGTTCCCGAACAAGTTGGGGAAAATTTAATCACAGCTTCAAGTATCAAAGAATATGATCTCCGTCAACGTCTTCATTGA

Protein Analysis

540

Amino Acids

62.48

Weight (kDa)

5.38

Isoelectric Point (pI)

52.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 56
AccII CGCG 1 cut(s) 330
AciI CCGC 2 cut(s) 549, 1074
AcsI RAATTY 7 cut(s) 284, 373, 466, 628, 881, 1431, 1567
AcuI CTGAAG 2 cut(s) 950, 1548
AdeI CACNNNGTG 1 cut(s) 274
AfeI AGCGCT 1 cut(s) 146
AfiI CCNNNNNNNGG 1 cut(s) 924
AflIII ACRYGT 1 cut(s) 1173
AhdI GACNNNNNGTC 1 cut(s) 748
Alw21I GWGCWC 1 cut(s) 119
Alw26I GTCTC 2 cut(s) 735, 1323
AlwNI CAGNNNCTG 1 cut(s) 1334
Aor51HI AGCGCT 1 cut(s) 146
AoxI GGCC 1 cut(s) 197
ApeKI GCWGC 5 cut(s) 551, 598, 829, 1111, 1328
ApoI RAATTY 7 cut(s) 284, 373, 466, 628, 881, 1431, 1567
AseI ATTAAT 1 cut(s) 407
Asp700I GAANNNNTTC 1 cut(s) 960
AspLEI GCGC 3 cut(s) 147, 332, 898
AspS9I GGNCC 3 cut(s) 68, 124, 1482
AsuHPI GGTGA 1 cut(s) 992
AsuII TTCGAA 1 cut(s) 481
AvaII GGWCC 3 cut(s) 68, 124, 1482
BanII GRGCYC 1 cut(s) 810
BarI GAAGNNNNNNTAC 4 cut(s) 1242, 1245, 1274, 1277
BbsI GAAGAC 3 cut(s) 1524, 1536, 1607
Bbv12I GWGCWC 1 cut(s) 119
BbvI GCAGC 5 cut(s) 563, 585, 841, 1098, 1340
BccI CCATC 4 cut(s) 321, 754, 833, 1000
BceAI ACGGC 2 cut(s) 116, 941
BclI TGATCA 3 cut(s) 262, 997, 1128
BcoDI GTCTC 2 cut(s) 735, 1323
BfaI CTAG 3 cut(s) 756, 836, 899
BfmI CTRYAG 1 cut(s) 434
BfoI RGCGCY 2 cut(s) 148, 899
BfuAI ACCTGC 1 cut(s) 56
BisI GCNGC 6 cut(s) 552, 599, 830, 1074, 1112, 1329
BlsI GCNGC 6 cut(s) 553, 600, 831, 1075, 1113, 1330
Bme18I GGWCC 3 cut(s) 68, 124, 1482
BmeRI GACNNNNNGTC 1 cut(s) 748
BmgT120I GGNCC 3 cut(s) 68, 124, 1482
BmsI GCATC 4 cut(s) 37, 109, 172, 436
BpiI GAAGAC 3 cut(s) 1524, 1536, 1607
BplI GAGNNNNNCTC 2 cut(s) 131, 163
BpmI CTGGAG 1 cut(s) 962
Bpu14I TTCGAA 1 cut(s) 481
BpuEI CTTGAG 2 cut(s) 133, 842
BsaI GGTCTC 2 cut(s) 735, 1323
BsaJI CCNNGG 3 cut(s) 24, 891, 1211
Bsc4I CCNNNNNNNGG 1 cut(s) 924
Bse1I ACTGG 1 cut(s) 1484
Bse3DI GCAATG 2 cut(s) 237, 654
BseDI CCNNGG 3 cut(s) 24, 891, 1211
BseGI GGATG 2 cut(s) 765, 1465
BseLI CCNNNNNNNGG 1 cut(s) 924
BseMI GCAATG 2 cut(s) 237, 654
BseMII CTCAG 5 cut(s) 158, 395, 512, 585, 1327
BseNI ACTGG 1 cut(s) 1484
BseXI GCAGC 5 cut(s) 563, 585, 841, 1098, 1340
BsgI GTGCAG 1 cut(s) 489
Bsh1236I CGCG 1 cut(s) 330
BshFI GGCC 1 cut(s) 199
BsiHKAI GWGCWC 1 cut(s) 119
BslFI GGGAC 2 cut(s) 690, 1388
BslI CCNNNNNNNGG 1 cut(s) 924
BsmAI GTCTC 2 cut(s) 735, 1323
BsmFI GGGAC 2 cut(s) 690, 1388
BsmI GAATGC 1 cut(s) 544
BsnI GGCC 1 cut(s) 199
Bso31I GGTCTC 2 cut(s) 735, 1323
Bsp119I TTCGAA 1 cut(s) 481
Bsp1286I GDGCHC 2 cut(s) 119, 810
Bsp143I GATC 6 cut(s) 262, 475, 520, 997, 1128, 1600
BspACI CCGC 2 cut(s) 549, 1074
BspANI GGCC 1 cut(s) 199
BspCNI CTCAG 5 cut(s) 159, 394, 511, 586, 1326
BspFNI CGCG 1 cut(s) 330
BspHI TCATGA 1 cut(s) 994
BspMAI CTGCAG 1 cut(s) 438
BspMI ACCTGC 1 cut(s) 56
BspQI GCTCTTC 1 cut(s) 951
BspT104I TTCGAA 1 cut(s) 481
BspTNI GGTCTC 2 cut(s) 735, 1323
BsrDI GCAATG 2 cut(s) 237, 654
BsrI ACTGG 1 cut(s) 1484
BssECI CCNNGG 3 cut(s) 24, 891, 1211
BssMI GATC 6 cut(s) 262, 475, 520, 997, 1128, 1600
BssT1I CCWWGG 1 cut(s) 24
Bst4CI ACNGT 3 cut(s) 1125, 1204, 1523
Bst6I CTCTTC 3 cut(s) 132, 897, 951
BstAPI GCANNNNNTGC 2 cut(s) 433, 1334
BstBI TTCGAA 1 cut(s) 481
BstC8I GCNNGC 5 cut(s) 324, 328, 1059, 1063, 1356
BstDEI CTNAG 7 cut(s) 167, 381, 498, 594, 1243, 1313, 1543
BstF5I GGATG 2 cut(s) 765, 1465
BstFNI CGCG 1 cut(s) 330
BstH2I RGCGCY 2 cut(s) 148, 899
BstHHI GCGC 3 cut(s) 147, 332, 898
BstKTI GATC 6 cut(s) 265, 478, 523, 1000, 1131, 1603
BstMAI GTCTC 2 cut(s) 735, 1323
BstMBI GATC 6 cut(s) 262, 475, 520, 997, 1128, 1600
BstMWI GCNNNNNNNGC 7 cut(s) 386, 433, 503, 829, 979, 1273, 1334
BstNSI RCATGY 3 cut(s) 1069, 1177, 1358
BstSFI CTRYAG 1 cut(s) 434
BstUI CGCG 1 cut(s) 330
BstV1I GCAGC 5 cut(s) 563, 585, 841, 1098, 1340
BstV2I GAAGAC 3 cut(s) 1524, 1536, 1607
BsuRI GGCC 1 cut(s) 199
BtsCI GGATG 2 cut(s) 765, 1465
BveI ACCTGC 1 cut(s) 56
Cac8I GCNNGC 5 cut(s) 324, 328, 1059, 1063, 1356
CaiI CAGNNNCTG 1 cut(s) 1334
CciI TCATGA 1 cut(s) 994
CfoI GCGC 3 cut(s) 147, 332, 898
Cfr13I GGNCC 3 cut(s) 68, 124, 1482
CviAII CATG 8 cut(s) 128, 213, 995, 1066, 1174, 1277, 1296, 1355
DdeI CTNAG 7 cut(s) 167, 381, 498, 594, 1243, 1313, 1543
DpnI GATC 6 cut(s) 264, 477, 522, 999, 1130, 1602
DpnII GATC 6 cut(s) 262, 475, 520, 997, 1128, 1600
DraIII CACNNNGTG 1 cut(s) 274
DriI GACNNNNNGTC 1 cut(s) 748
Eam1104I CTCTTC 3 cut(s) 132, 897, 951
Eam1105I GACNNNNNGTC 1 cut(s) 748
EarI CTCTTC 3 cut(s) 132, 897, 951
Eco130I CCWWGG 1 cut(s) 24
Eco147I AGGCCT 1 cut(s) 199
Eco24I GRGCYC 1 cut(s) 810
Eco31I GGTCTC 2 cut(s) 735, 1323
Eco47I GGWCC 3 cut(s) 68, 124, 1482
Eco47III AGCGCT 1 cut(s) 146
Eco57I CTGAAG 2 cut(s) 950, 1548
EcoRI GAATTC 3 cut(s) 284, 466, 1431
EcoT14I CCWWGG 1 cut(s) 24
EcoT22I ATGCAT 1 cut(s) 1356
EcoT38I GRGCYC 1 cut(s) 810
ErhI CCWWGG 1 cut(s) 24
FaeI CATG 8 cut(s) 131, 216, 998, 1069, 1177, 1280, 1299, 1358
FalI AAGNNNNNCTT 8 cut(s) 142, 174, 187, 219, 945, 977, 948, 980
FaqI GGGAC 2 cut(s) 690, 1388
FatI CATG 8 cut(s) 127, 212, 994, 1065, 1173, 1276, 1295, 1354
FbaI TGATCA 3 cut(s) 262, 997, 1128
Fnu4HI GCNGC 6 cut(s) 552, 599, 830, 1074, 1112, 1329
FokI GGATG 2 cut(s) 772, 1472
FriOI GRGCYC 1 cut(s) 810
Fsp4HI GCNGC 6 cut(s) 552, 599, 830, 1074, 1112, 1329
FspBI CTAG 3 cut(s) 756, 836, 899
GlaI GCGC 3 cut(s) 146, 331, 897
GluI GCNGC 6 cut(s) 552, 599, 830, 1074, 1112, 1329
GsuI CTGGAG 1 cut(s) 962
HaeII RGCGCY 2 cut(s) 148, 899
HaeIII GGCC 1 cut(s) 199
HhaI GCGC 3 cut(s) 147, 332, 898
Hin1II CATG 8 cut(s) 131, 216, 998, 1069, 1177, 1280, 1299, 1358
Hin6I GCGC 3 cut(s) 145, 330, 896
HinP1I GCGC 3 cut(s) 145, 330, 896
HincII GTYRAC 1 cut(s) 1610
HindII GTYRAC 1 cut(s) 1610
HindIII AAGCTT 1 cut(s) 1134
HphI GGTGA 1 cut(s) 992
Hpy166II GTNNAC 2 cut(s) 1179, 1610
Hpy188III TCNNGA 4 cut(s) 150, 836, 995, 1550
Hpy8I GTNNAC 2 cut(s) 1179, 1610
HpyAV CCTTC 8 cut(s) 178, 219, 386, 599, 628, 632, 1319, 1414
HpyCH4III ACNGT 3 cut(s) 1125, 1204, 1523
HpyCH4IV ACGT 1 cut(s) 1612
HpyF10VI GCNNNNNNNGC 7 cut(s) 386, 433, 503, 829, 979, 1273, 1334
HpyF3I CTNAG 7 cut(s) 167, 381, 498, 594, 1243, 1313, 1543
HpySE526I ACGT 1 cut(s) 1612
Hsp92II CATG 8 cut(s) 131, 216, 998, 1069, 1177, 1280, 1299, 1358
HspAI GCGC 3 cut(s) 145, 330, 896
Ksp22I TGATCA 3 cut(s) 262, 997, 1128
Kzo9I GATC 6 cut(s) 262, 475, 520, 997, 1128, 1600
LguI GCTCTTC 1 cut(s) 951
LmnI GCTCC 1 cut(s) 862
Lsp1109I GCAGC 5 cut(s) 563, 585, 841, 1098, 1340
LweI GCATC 4 cut(s) 37, 109, 172, 436
MaeI CTAG 3 cut(s) 756, 836, 899
MaeII ACGT 1 cut(s) 1612
MaeIII GTNAC 2 cut(s) 215, 941
MalI GATC 6 cut(s) 264, 477, 522, 999, 1130, 1602
MboI GATC 6 cut(s) 262, 475, 520, 997, 1128, 1600
MhlI GDGCHC 2 cut(s) 119, 810
MlyI GAGTC 3 cut(s) 182, 467, 1231
MmeI TCCRAC 3 cut(s) 381, 718, 1008
MnlI CCTC 7 cut(s) 115, 210, 302, 886, 1024, 1221, 1495
Mph1103I ATGCAT 1 cut(s) 1356
MroXI GAANNNNTTC 1 cut(s) 960
MseI TTAA 6 cut(s) 336, 369, 407, 875, 1425, 1571
MslI CAYNNNNRTG 2 cut(s) 15, 168
Mva1269I GAATGC 1 cut(s) 544
MvnI CGCG 1 cut(s) 330
MwoI GCNNNNNNNGC 7 cut(s) 386, 433, 503, 829, 979, 1273, 1334
NdeII GATC 6 cut(s) 262, 475, 520, 997, 1128, 1600
NlaIII CATG 8 cut(s) 131, 216, 998, 1069, 1177, 1280, 1299, 1358
NmeAIII GCCGAG 1 cut(s) 1192
NmuCI GTSAC 2 cut(s) 215, 941
NsiI ATGCAT 1 cut(s) 1356
NspI RCATGY 3 cut(s) 1069, 1177, 1358
NspV TTCGAA 1 cut(s) 481
PaeI GCATGC 1 cut(s) 1358
PagI TCATGA 1 cut(s) 994
PceI AGGCCT 1 cut(s) 199
PciI ACATGT 1 cut(s) 1173
PciSI GCTCTTC 1 cut(s) 951
PctI GAATGC 1 cut(s) 544
PdmI GAANNNNTTC 1 cut(s) 960
PfeI GAWTC 7 cut(s) 584, 659, 766, 1040, 1049, 1118, 1390
PkrI GCNGC 6 cut(s) 553, 600, 831, 1075, 1113, 1330
PleI GAGTC 3 cut(s) 182, 466, 1231
PpsI GAGTC 3 cut(s) 182, 466, 1231
PscI ACATGT 1 cut(s) 1173
PshBI ATTAAT 1 cut(s) 407
PspPI GGNCC 3 cut(s) 68, 124, 1482
PstI CTGCAG 1 cut(s) 438
PstNI CAGNNNCTG 1 cut(s) 1334
RseI CAYNNNNRTG 2 cut(s) 15, 168
SapI GCTCTTC 1 cut(s) 951
SaqAI TTAA 6 cut(s) 336, 369, 407, 875, 1425, 1571
SatI GCNGC 6 cut(s) 552, 599, 830, 1074, 1112, 1329
Sau3AI GATC 6 cut(s) 262, 475, 520, 997, 1128, 1600
Sau96I GGNCC 3 cut(s) 68, 124, 1482
SchI GAGTC 3 cut(s) 182, 467, 1231
SduI GDGCHC 2 cut(s) 119, 810
SfaNI GCATC 4 cut(s) 37, 109, 172, 436
SfcI CTRYAG 1 cut(s) 434
SfuI TTCGAA 1 cut(s) 481
SinI GGWCC 3 cut(s) 68, 124, 1482
SmiMI CAYNNNNRTG 2 cut(s) 15, 168
SmlI CTYRAG 2 cut(s) 148, 857
SmoI CTYRAG 2 cut(s) 148, 857
SphI GCATGC 1 cut(s) 1358
SseBI AGGCCT 1 cut(s) 199
SsiI CCGC 2 cut(s) 549, 1074
SspMI CTAG 3 cut(s) 756, 836, 899
StuI AGGCCT 1 cut(s) 199
StyI CCWWGG 1 cut(s) 24
TaaI ACNGT 3 cut(s) 1125, 1204, 1523
TaiI ACGT 1 cut(s) 1615
TaqI TCGA 3 cut(s) 294, 470, 481
TauI GCSGC 1 cut(s) 1076
TfiI GAWTC 7 cut(s) 584, 659, 766, 1040, 1049, 1118, 1390
Tru1I TTAA 6 cut(s) 336, 369, 407, 875, 1425, 1571
Tru9I TTAA 6 cut(s) 336, 369, 407, 875, 1425, 1571
TseFI GTSAC 2 cut(s) 215, 941
TseI GCWGC 5 cut(s) 551, 598, 829, 1111, 1328
Tsp45I GTSAC 2 cut(s) 215, 941
TspDTI ATGAA 9 cut(s) 201, 378, 635, 717, 983, 1395, 1476, 1530, 1607
TspGWI ACGGA 1 cut(s) 1595
VpaK11BI GGWCC 3 cut(s) 68, 124, 1482
VspI ATTAAT 1 cut(s) 407
XapI RAATTY 7 cut(s) 284, 373, 466, 628, 881, 1431, 1567
XbaI TCTAGA 1 cut(s) 835
XceI RCATGY 3 cut(s) 1069, 1177, 1358
XcmI CCANNNNNNNNNTGG 1 cut(s) 78
XmnI GAANNNNTTC 1 cut(s) 960
XspI CTAG 3 cut(s) 756, 836, 899
Zsp2I ATGCAT 1 cut(s) 1356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.