MD09G1119800.v1.1

Protein GAMETE EXPRESSED

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Reverse (-)
9245282 .. 9245675
394 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1119800.v1.1.491

Sequence Viewer

Length: 315 bp
ATGTTGCTAATAACACATTTTAAAATTTGCAGGGCGATATTGCAGCAGTTCACTACATTTGGCCGTGAAAAACAGGAAGGGCTTCTTCAAAGCCAAGAGAAGATTCAACGAGCTCATGACCATTTAGTTGAAAATTCACAGACCATATTGGAAGCTCAAGAAGCTTTTGAACAGAAGCAGTCATCCATGTTTGTTGCTTTGGATAGGCTATTTGCCTTGCAGGACGCGTTGCTGGTGGAAACACGATCAATGAAAGCAGTCGTTTTCTATTTCATATCAATGCTTGCCATTTACATGTTAACCAGCACAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

12.09

Weight (kDa)

6.83

Isoelectric Point (pI)

59.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 227
AcoI YGGCCR 1 cut(s) 61
AcsI RAATTY 2 cut(s) 24, 133
AflIII ACRYGT 2 cut(s) 225, 294
AgsI TTSAA 4 cut(s) 89, 107, 131, 170
AjuI GAANNNNNNNTTGG 2 cut(s) 87, 119
AluBI AGCT 3 cut(s) 113, 155, 164
AluI AGCT 3 cut(s) 113, 155, 164
Alw21I GWGCWC 1 cut(s) 115
AoxI GGCC 1 cut(s) 61
ApeKI GCWGC 1 cut(s) 43
ApoI RAATTY 2 cut(s) 24, 133
Asp700I GAANNNNTTC 1 cut(s) 81
BanII GRGCYC 1 cut(s) 115
Bbv12I GWGCWC 1 cut(s) 115
BbvI GCAGC 1 cut(s) 55
BceAI ACGGC 1 cut(s) 48
BisI GCNGC 1 cut(s) 44
BlsI GCNGC 1 cut(s) 45
BpuEI CTTGAG 1 cut(s) 141
BseGI GGATG 1 cut(s) 182
BseXI GCAGC 1 cut(s) 55
Bsh1236I CGCG 1 cut(s) 227
BshFI GGCC 1 cut(s) 63
BsiHKAI GWGCWC 1 cut(s) 115
BsnI GGCC 1 cut(s) 63
Bsp1286I GDGCHC 1 cut(s) 115
Bsp143I GATC 1 cut(s) 245
BspANI GGCC 1 cut(s) 63
BspFNI CGCG 1 cut(s) 227
BspHI TCATGA 1 cut(s) 115
BssMI GATC 1 cut(s) 245
BstC8I GCNNGC 1 cut(s) 285
BstF5I GGATG 1 cut(s) 182
BstFNI CGCG 1 cut(s) 227
BstKTI GATC 1 cut(s) 248
BstMBI GATC 1 cut(s) 245
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstNSI RCATGY 1 cut(s) 298
BstUI CGCG 1 cut(s) 227
BstV1I GCAGC 1 cut(s) 55
BsuRI GGCC 1 cut(s) 63
BtsCI GGATG 1 cut(s) 182
Cac8I GCNNGC 1 cut(s) 285
CciI TCATGA 1 cut(s) 115
CseI GACGC 1 cut(s) 233
CviAII CATG 3 cut(s) 116, 187, 295
CviJI RGCY 7 cut(s) 63, 82, 93, 113, 155, 164, 208
CviKI_1 RGCY 7 cut(s) 63, 82, 93, 113, 155, 164, 208
DpnI GATC 1 cut(s) 247
DpnII GATC 1 cut(s) 245
DraI TTTAAA 1 cut(s) 22
EaeI YGGCCR 1 cut(s) 61
Ecl136II GAGCTC 1 cut(s) 113
Eco24I GRGCYC 1 cut(s) 115
Eco53kI GAGCTC 1 cut(s) 113
EcoICRI GAGCTC 1 cut(s) 113
EcoT38I GRGCYC 1 cut(s) 115
FaeI CATG 3 cut(s) 119, 190, 298
FaiI YATR 5 cut(s) 117, 146, 188, 275, 296
FalI AAGNNNNNCTT 2 cut(s) 69, 101
FatI CATG 3 cut(s) 115, 186, 294
Fnu4HI GCNGC 1 cut(s) 44
FokI GGATG 1 cut(s) 169
FriOI GRGCYC 1 cut(s) 115
Fsp4HI GCNGC 1 cut(s) 44
GluI GCNGC 1 cut(s) 44
HaeIII GGCC 1 cut(s) 63
HgaI GACGC 1 cut(s) 233
Hin1II CATG 3 cut(s) 119, 190, 298
HincII GTYRAC 1 cut(s) 300
HindII GTYRAC 1 cut(s) 300
HindIII AAGCTT 1 cut(s) 162
HinfI GANTC 1 cut(s) 103
HpaI GTTAAC 1 cut(s) 300
Hpy166II GTNNAC 2 cut(s) 51, 300
Hpy188III TCNNGA 2 cut(s) 116, 158
Hpy8I GTNNAC 2 cut(s) 51, 300
HpyAV CCTTC 1 cut(s) 71
HpyCH4V TGCA 3 cut(s) 30, 43, 220
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
Hsp92II CATG 3 cut(s) 119, 190, 298
KspAI GTTAAC 1 cut(s) 300
Kzo9I GATC 1 cut(s) 245
LpnPI CCDG 4 cut(s) 16, 59, 206, 218
Lsp1109I GCAGC 1 cut(s) 55
MalI GATC 1 cut(s) 247
MboI GATC 1 cut(s) 245
MboII GAAGA 2 cut(s) 77, 112
MhlI GDGCHC 1 cut(s) 115
MluCI AATT 2 cut(s) 24, 133
MluI ACGCGT 1 cut(s) 225
MroXI GAANNNNTTC 1 cut(s) 81
MseI TTAA 2 cut(s) 21, 299
MslI CAYNNNNRTG 2 cut(s) 278, 293
MvnI CGCG 1 cut(s) 227
MwoI GCNNNNNNNGC 1 cut(s) 161
NdeII GATC 1 cut(s) 245
NlaIII CATG 3 cut(s) 119, 190, 298
NspI RCATGY 1 cut(s) 298
PagI TCATGA 1 cut(s) 115
PciI ACATGT 1 cut(s) 294
PdmI GAANNNNTTC 1 cut(s) 81
PfeI GAWTC 1 cut(s) 103
PkrI GCNGC 1 cut(s) 45
PscI ACATGT 1 cut(s) 294
Psp124BI GAGCTC 1 cut(s) 115
RseI CAYNNNNRTG 2 cut(s) 278, 293
SacI GAGCTC 1 cut(s) 115
SaqAI TTAA 2 cut(s) 21, 299
SatI GCNGC 1 cut(s) 44
Sau3AI GATC 1 cut(s) 245
SduI GDGCHC 1 cut(s) 115
SetI ASST 3 cut(s) 115, 157, 166
SmiMI CAYNNNNRTG 2 cut(s) 278, 293
SmlI CTYRAG 1 cut(s) 156
SmoI CTYRAG 1 cut(s) 156
Sse9I AATT 2 cut(s) 24, 133
SstI GAGCTC 1 cut(s) 115
TasI AATT 2 cut(s) 24, 133
TfiI GAWTC 1 cut(s) 103
Tru1I TTAA 2 cut(s) 21, 299
Tru9I TTAA 2 cut(s) 21, 299
TseI GCWGC 1 cut(s) 43
TspDTI ATGAA 2 cut(s) 262, 266
XapI RAATTY 2 cut(s) 24, 133
XceI RCATGY 1 cut(s) 298
XmnI GAANNNNTTC 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.