Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001722

Physical Location & Seq

Genomic Coordinates Reverse (-)

70920004 .. 70922310

Gene Structure 2307 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020995

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1779 bp

ATGGGCCGATTCAAATCTCTTCTTTTCATGTTGATCTTCCTAACTCTATCAAGGTCTTGTATGTCTGATTGGTGGTTCTTTTCTTCTTCTAGCAAGACTACTGACCAGAAACCTCCAGAAACTCTGCAAATATCCGGTGATGTTTCGGTTGAATTCTCCATGAAAGCTTTCCACAATGAAAAGGCAATTGAACGAATAGAAGAGGCTGGTAAAAGAAAACTGAAATCTTGTTGGGATGATGCTTATAAAGCACTAGTTACATCATGCTCCGAAATTTCCAGTGACAAGAATGATATGAAGAAGAGGTTTTCTTGGGAACTAAGCAACTGCTTTCAGAAGGACATCGGAAGGTCTCCTTTTCCTACGTGCCGTGAAGGCTCTCCCATGAAAGATTGCCTTGCAAAATTGGACGACAGTGCTATTCAGACTTACCGGGCATTCTTCCTCGAGACCGAGTCTCATGTATTCAGGGCTGAGACAGAAAAGTTGGTGAATGAATTGGTGAAGTCAGCTGATTATGCAGAGGGCAAATTAGACACCATAGCACAACAATCAGAGAAATTGTTGGAGGGTTCAAAATATATACACATATCTTTGACTTCCATTGACAAGCAGACACAAGAAATGGCTCAAACTTCCAAGAAAGTGGGTGATCAAATTGGTAATATAGTGAAGCAGTCAGAGGTAATGTTTGAGCAATCTGAGAAGATTGCTGCATCTCAGTTAGAATTGCAAAAAGGGCAAGACAAAATGAAGGAAAATTTGCAAGAGGGCATGGAAGTGATTCATGAGTCTTATCATGCTCTAGGTCAAGAAATACACAGTTTACAGAATGAGACTATTGAAATAGAGAAGAAGGTAACTGAAGTTGGCGACACCGTGTCTACAAAGATGAACAGCCTCCAAAGTAAGGCTGATGATATTAGCAATGTAACAGAGATTTCCTTGGAAAAGCAAAAAGAACTTCTGGAAGGTCAATCCGAAGCTCTTGACGGGCTTCAGTCACTAACTAAATTCCAGGTTCAAGCTCTAGAAGAGAGCAGGGGTATTTTGCAGCAATTGGCTAAATTTGGTCGTGAACAGCAAGAAGAGCTACTTCGGCAACAAGAACAGATTAAACAAGGCCATGACAATCTGGTTAAAAATTCGAATTCCATACTGGCAGCTCAGGAAGCATTTGAACAAAAGCAAGAAACCATGTTTGTTGCTTTGGAAAAGCTATTCAAATTGCACAATGCCTTGTTGCTCGAATCGAGATCAATCAAAGCTTTCTTTCTTTATTCCATATCGATGTTTGTCATCTACTTGTCGACCAGCACAAAGCAAACTTACAAAGTGAGACCCATACTTTACATAGGTCTATGCGTTGCATTTTCGATTGAATTAGCAACGCTTAGGTTTTCAAGAAATGGAGTAGAGCAACAGACTTTGATAGTCAATGGTATTAGGCTCCTTTATGTGTTGTTTTCTTTAGTTCTGGTAGCATACGCCGCCTTCACATATAGGGACTACGAAATGCTGAACTACAACATGCTGAAAAATCTAACAGAGGAGTTTCTAAGGTTTCAAAAAAATGCTGCTTCGCCATGGGTTAGCGATGACTCATCAGATGATGATAATGATGACTCGGACTGGATTACATCTGTTGACACTGACGTAAATGATGGCATTGAAAACCTATTCGACCACTCCTCCTATCATATACATGAGGAGGTTGGAGATAATTCAAATCTTGTTTCTTCGAGTACTAGAAGATATAATCTCCGCAGTCGTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

593

Amino Acids

67.7

Weight (kDa)

5.2

Isoelectric Point (pI)

59.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490
fragaria_vesca	FvH4_6g33230 FvH4_6g41730
malus_domestica	MD09G1119800.v1.1 MD09G1266100.v1.1 MD17G1110600.v1.1
prunus_persica	Prupe.3G163900_v2.0.a1 Prupe.3G204300_v2.0.a1 Prupe.3G204300_v2.0.a1
pyrus_communis	pycom07g05510
rosa_chinensis	RchiOBHm_Chr2g0139401 RchiOBHm_Chr2g0142951 RchiOBHm_Chr2g0157531
rosa_laevigata	RLG00000020000 RLG00000020995
rosa_multiflora	Rmu_co8048568.1_g000001 Rmu_sc0000083.1_g000018 Rmu_sc0002277.1_g000037 Rmu_sc0036081.1_g000001 Rmu_sc0036082.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092150 Rroxscaffold_2G00102200 Rroxscaffold_2G00147380
rosa_rugosa	Rorug02G0377400 Rorug02G0461800
rosa_samantha	Rh1CG268300 Rh2AG430400 Rh2AG525900 Rh2BG439400 Rh2BG540600 Rh2CG416100 Rh2CG510600 Rh2DG449400 Rh2DG549100 Rh4BG060600 Rh4CG066400 Rh5DG444200 Rh7DG175700
rosa_wichuraiana	Rw2G035150 Rw2G043560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	246
AccI	GTMKAC	2 cut(s)	884, 1310
AciI	CCGC	2 cut(s)	1491, 1765
AcsI	RAATTY	7 cut(s)	152, 273, 760, 1013, 1067, 1144, 1150
AcuI	CTGAAG	2 cut(s)	885, 983
AfaI	GTAC	1 cut(s)	1747
AfiI	CCNNNNNNNGG	1 cut(s)	910
AhdI	GACNNNNNGTC	1 cut(s)	880
AhlI	ACTAGT	1 cut(s)	253
AjnI	CCWGG	1 cut(s)	1017
AluBI	AGCT	8 cut(s)	167, 512, 986, 1028, 1093, 1166, 1219, 1268
AluI	AGCT	8 cut(s)	167, 512, 986, 1028, 1093, 1166, 1219, 1268
Alw26I	GTCTC	6 cut(s)	357, 443, 462, 470, 830, 1333
Ama87I	CYCGRG	1 cut(s)	446
AoxI	GGCC	2 cut(s)	4, 1123
ApeKI	GCWGC	4 cut(s)	713, 1054, 1163, 1577
ApoI	RAATTY	7 cut(s)	152, 273, 760, 1013, 1067, 1144, 1150
Asp700I	GAANNNNTTC	2 cut(s)	167, 783
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	434
AsuHPI	GGTGA	4 cut(s)	149, 502, 514, 662
AsuII	TTCGAA	1 cut(s)	1148
AvaI	CYCGRG	1 cut(s)	446
BbvI	GCAGC	4 cut(s)	700, 1066, 1175, 1564
BccI	CCATC	1 cut(s)	1658
BceAI	ACGGC	1 cut(s)	354
BciT130I	CCWGG	1 cut(s)	1019
BclI	TGATCA	1 cut(s)	652
BcnI	CCSGG	1 cut(s)	434
BcoDI	GTCTC	6 cut(s)	357, 443, 462, 470, 830, 1333
BcuI	ACTAGT	1 cut(s)	253
BfaI	CTAG	5 cut(s)	90, 254, 806, 1031, 1749
BglI	GCCNNNNNGGC	1 cut(s)	375
BisI	GCNGC	5 cut(s)	714, 1055, 1164, 1491, 1578
BlsI	GCNGC	5 cut(s)	715, 1056, 1165, 1492, 1579
BmcAI	AGTACT	1 cut(s)	1747
Bme1390I	CCNGG	2 cut(s)	434, 1019
BmeRI	GACNNNNNGTC	1 cut(s)	880
BmeT110I	CYCGRG	1 cut(s)	446
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	1451
BmrFI	CCNGG	2 cut(s)	434, 1019
BmsI	GCATC	2 cut(s)	229, 725
BpmI	CTGGAG	1 cut(s)	99
Bpu10I	CCTNAGC	2 cut(s)	1167, 1394
Bpu14I	TTCGAA	1 cut(s)	1148
BpuMI	CCSGG	1 cut(s)	434
Bsa29I	ATCGAT	1 cut(s)	1289
BsaAI	YACGTR	1 cut(s)	366
BsaBI	GATNNNNATC	1 cut(s)	13
BsaI	GGTCTC	3 cut(s)	357, 443, 1333
BsaJI	CCNNGG	2 cut(s)	945, 1586
BsaWI	WCCGGW	1 cut(s)	134
BsaXI	ACNNNNNCTCC	2 cut(s)	1676, 1706
Bsc4I	CCNNNNNNNGG	1 cut(s)	910
Bse1I	ACTGG	3 cut(s)	279, 1164, 1637
Bse3DI	GCAATG	1 cut(s)	934
Bse8I	GATNNNNATC	1 cut(s)	13
BseBI	CCWGG	1 cut(s)	1019
BseCI	ATCGAT	1 cut(s)	1289
BseDI	CCNNGG	2 cut(s)	945, 1586
BseGI	GGATG	1 cut(s)	241
BseJI	GATNNNNATC	1 cut(s)	13
BseLI	CCNNNNNNNGG	1 cut(s)	910
BseMI	GCAATG	1 cut(s)	934
BseMII	CTCAG	4 cut(s)	465, 693, 734, 1181
BseNI	ACTGG	3 cut(s)	279, 1164, 1637
BseRI	GAGGAG	3 cut(s)	1565, 1681, 1724
BseXI	GCAGC	4 cut(s)	700, 1066, 1175, 1564
BshFI	GGCC	2 cut(s)	6, 1125
BshVI	ATCGAT	1 cut(s)	1289
BsiHKCI	CYCGRG	1 cut(s)	446
BsiSI	CCGG	2 cut(s)	135, 433
BslFI	GGGAC	1 cut(s)	1520
BslI	CCNNNNNNNGG	1 cut(s)	910
BsmAI	GTCTC	6 cut(s)	357, 443, 462, 470, 830, 1333
BsmFI	GGGAC	1 cut(s)	1520
BsmI	GAATGC	1 cut(s)	437
BsnI	GGCC	2 cut(s)	6, 1125
Bso31I	GGTCTC	3 cut(s)	357, 443, 1333
BsoBI	CYCGRG	1 cut(s)	446
Bsp119I	TTCGAA	1 cut(s)	1148
Bsp143I	GATC	3 cut(s)	33, 652, 1256
Bsp19I	CCATGG	1 cut(s)	1586
BspACI	CCGC	2 cut(s)	1491, 1765
BspANI	GGCC	2 cut(s)	6, 1125
BspCNI	CTCAG	4 cut(s)	466, 694, 733, 1180
BspDI	ATCGAT	1 cut(s)	1289
BspHI	TCATGA	1 cut(s)	787
BspLI	GGNNCC	1 cut(s)	1451
BspQI	GCTCTTC	1 cut(s)	1083
BspT104I	TTCGAA	1 cut(s)	1148
BspTNI	GGTCTC	3 cut(s)	357, 443, 1333
BsrDI	GCAATG	1 cut(s)	934
BsrI	ACTGG	3 cut(s)	279, 1164, 1637
BssECI	CCNNGG	2 cut(s)	945, 1586
BssMI	GATC	3 cut(s)	33, 652, 1256
BssT1I	CCWWGG	2 cut(s)	945, 1586
Bst2UI	CCWGG	1 cut(s)	1019
Bst4CI	ACNGT	3 cut(s)	416, 824, 880
Bst6I	CTCTTC	5 cut(s)	24, 195, 296, 1029, 1083
BstBAI	YACGTR	1 cut(s)	366
BstBI	TTCGAA	1 cut(s)	1148
BstDEI	CTNAG	7 cut(s)	320, 474, 702, 720, 1167, 1394, 1559
BstDSI	CCRYGG	1 cut(s)	1586
BstF5I	GGATG	1 cut(s)	241
BstKTI	GATC	3 cut(s)	36, 655, 1259
BstMAI	GTCTC	6 cut(s)	357, 443, 462, 470, 830, 1333
BstMBI	GATC	3 cut(s)	33, 652, 1256
BstMWI	GCNNNNNNNGC	8 cut(s)	248, 375, 518, 739, 1090, 1099, 1172, 1490
BstNI	CCWGG	1 cut(s)	1019
BstNSI	RCATGY	1 cut(s)	1534
BstSCI	CCNGG	2 cut(s)	432, 1017
BstV1I	GCAGC	4 cut(s)	700, 1066, 1175, 1564
BstXI	CCANNNNNNTGG	1 cut(s)	646
Bsu15I	ATCGAT	1 cut(s)	1289
BsuRI	GGCC	2 cut(s)	6, 1125
BsuTUI	ATCGAT	1 cut(s)	1289
BtgI	CCRYGG	1 cut(s)	1586
BtgZI	GCGATG	1 cut(s)	1611
BtsCI	GGATG	1 cut(s)	241
BtsIMutI	CAGTG	3 cut(s)	286, 421, 1650
CciI	TCATGA	1 cut(s)	787
Cfr13I	GGNCC	1 cut(s)	4
ClaI	ATCGAT	1 cut(s)	1289
Csp6I	GTAC	1 cut(s)	1746
CviQI	GTAC	1 cut(s)	1746
DdeI	CTNAG	7 cut(s)	320, 474, 702, 720, 1167, 1394, 1559
DpnI	GATC	3 cut(s)	35, 654, 1258
DpnII	GATC	3 cut(s)	33, 652, 1256
DriI	GACNNNNNGTC	1 cut(s)	880
Eam1104I	CTCTTC	5 cut(s)	24, 195, 296, 1029, 1083
Eam1105I	GACNNNNNGTC	1 cut(s)	880
EarI	CTCTTC	5 cut(s)	24, 195, 296, 1029, 1083
Eco130I	CCWWGG	2 cut(s)	945, 1586
Eco31I	GGTCTC	3 cut(s)	357, 443, 1333
Eco57I	CTGAAG	2 cut(s)	885, 983
Eco88I	CYCGRG	1 cut(s)	446
EcoRI	GAATTC	2 cut(s)	152, 1150
EcoRII	CCWGG	1 cut(s)	1017
EcoT14I	CCWWGG	2 cut(s)	945, 1586
ErhI	CCWWGG	2 cut(s)	945, 1586
FalI	AAGNNNNNCTT	6 cut(s)	340, 372, 381, 413, 1080, 1112
FaqI	GGGAC	1 cut(s)	1520
FbaI	TGATCA	1 cut(s)	652
FblI	GTMKAC	2 cut(s)	884, 1310
Fnu4HI	GCNGC	5 cut(s)	714, 1055, 1164, 1491, 1578
FokI	GGATG	1 cut(s)	248
Fsp4HI	GCNGC	5 cut(s)	714, 1055, 1164, 1491, 1578
FspBI	CTAG	5 cut(s)	90, 254, 806, 1031, 1749
GluI	GCNGC	5 cut(s)	714, 1055, 1164, 1491, 1578
GsuI	CTGGAG	1 cut(s)	99
HaeIII	GGCC	2 cut(s)	6, 1125
HapII	CCGG	2 cut(s)	135, 433
HincII	GTYRAC	2 cut(s)	1311, 1648
HindII	GTYRAC	2 cut(s)	1311, 1648
HindIII	AAGCTT	2 cut(s)	165, 1266
HinfI	GANTC	7 cut(s)	9, 455, 784, 791, 1250, 1601, 1625
HpaII	CCGG	2 cut(s)	135, 433
HphI	GGTGA	4 cut(s)	149, 502, 514, 662
Hpy166II	GTNNAC	5 cut(s)	827, 885, 1079, 1311, 1648
Hpy8I	GTNNAC	5 cut(s)	827, 885, 1079, 1311, 1648
Hpy99I	CGWCG	1 cut(s)	1776
HpyAV	CCTTC	7 cut(s)	331, 342, 368, 748, 850, 965, 1504
HpyCH4III	ACNGT	3 cut(s)	416, 824, 880
HpyCH4IV	ACGT	2 cut(s)	365, 1656
HpyCH4V	TGCA	9 cut(s)	127, 401, 521, 716, 733, 766, 1054, 1231, 1370
HpyF10VI	GCNNNNNNNGC	8 cut(s)	248, 375, 518, 739, 1090, 1099, 1172, 1490
HpyF3I	CTNAG	7 cut(s)	320, 474, 702, 720, 1167, 1394, 1559
HpySE526I	ACGT	2 cut(s)	365, 1656
Ksp22I	TGATCA	1 cut(s)	652
Kzo9I	GATC	3 cut(s)	33, 652, 1256
LguI	GCTCTTC	1 cut(s)	1083
LmnI	GCTCC	2 cut(s)	272, 1455
Lsp1109I	GCAGC	4 cut(s)	700, 1066, 1175, 1564
LweI	GCATC	2 cut(s)	229, 725
MaeI	CTAG	5 cut(s)	90, 254, 806, 1031, 1749
MaeII	ACGT	2 cut(s)	365, 1656
MaeIII	GTNAC	5 cut(s)	256, 281, 859, 931, 1002
MalI	GATC	3 cut(s)	35, 654, 1258
MboI	GATC	3 cut(s)	33, 652, 1256
MfeI	CAATTG	2 cut(s)	186, 1058
MlyI	GAGTC	4 cut(s)	464, 800, 1595, 1619
MmeI	TCCRAC	2 cut(s)	546, 1696
MroXI	GAANNNNTTC	2 cut(s)	167, 783
MseI	TTAA	3 cut(s)	1116, 1140, 1777
MslI	CAYNNNNRTG	3 cut(s)	779, 1289, 1704
MspA1I	CMGCKG	1 cut(s)	512
MspI	CCGG	2 cut(s)	135, 433
MspR9I	CCNGG	2 cut(s)	434, 1019
MunI	CAATTG	2 cut(s)	186, 1058
Mva1269I	GAATGC	1 cut(s)	437
MvaI	CCWGG	1 cut(s)	1019
MwoI	GCNNNNNNNGC	8 cut(s)	248, 375, 518, 739, 1090, 1099, 1172, 1490
NciI	CCSGG	1 cut(s)	434
NcoI	CCATGG	1 cut(s)	1586
NdeII	GATC	3 cut(s)	33, 652, 1256
NlaIV	GGNNCC	1 cut(s)	1451
NmuCI	GTSAC	2 cut(s)	281, 1002
NspI	RCATGY	1 cut(s)	1534
NspV	TTCGAA	1 cut(s)	1148
PaeR7I	CTCGAG	1 cut(s)	446
PagI	TCATGA	1 cut(s)	787
PciSI	GCTCTTC	1 cut(s)	1083
PctI	GAATGC	1 cut(s)	437
PdmI	GAANNNNTTC	2 cut(s)	167, 783
PfeI	GAWTC	3 cut(s)	9, 784, 1250
PflFI	GACNNNGTC	1 cut(s)	454
PkrI	GCNGC	5 cut(s)	715, 1056, 1165, 1492, 1579
PleI	GAGTC	4 cut(s)	463, 799, 1595, 1619
PpsI	GAGTC	4 cut(s)	463, 799, 1595, 1619
Ppu21I	YACGTR	1 cut(s)	366
PsiI	TTATAA	1 cut(s)	246
Psp6I	CCWGG	1 cut(s)	1017
PspGI	CCWGG	1 cut(s)	1017
PspN4I	GGNNCC	1 cut(s)	1451
PspPI	GGNCC	1 cut(s)	4
PsyI	GACNNNGTC	1 cut(s)	454
PvuII	CAGCTG	1 cut(s)	512
RsaI	GTAC	1 cut(s)	1747
RsaNI	GTAC	1 cut(s)	1746
RseI	CAYNNNNRTG	3 cut(s)	779, 1289, 1704
SalI	GTCGAC	1 cut(s)	1309
SapI	GCTCTTC	1 cut(s)	1083
SaqAI	TTAA	3 cut(s)	1116, 1140, 1777
SatI	GCNGC	5 cut(s)	714, 1055, 1164, 1491, 1578
Sau3AI	GATC	3 cut(s)	33, 652, 1256
Sau96I	GGNCC	1 cut(s)	4
ScaI	AGTACT	1 cut(s)	1747
SchI	GAGTC	4 cut(s)	464, 800, 1595, 1619
ScrFI	CCNGG	2 cut(s)	434, 1019
SfaNI	GCATC	2 cut(s)	229, 725
Sfr274I	CTCGAG	1 cut(s)	446
SfuI	TTCGAA	1 cut(s)	1148
SlaI	CTCGAG	1 cut(s)	446
SmiMI	CAYNNNNRTG	3 cut(s)	779, 1289, 1704
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
SpeI	ACTAGT	1 cut(s)	253
SsiI	CCGC	2 cut(s)	1491, 1765
SspMI	CTAG	5 cut(s)	90, 254, 806, 1031, 1749
StyD4I	CCNGG	2 cut(s)	432, 1017
StyI	CCWWGG	2 cut(s)	945, 1586
TaaI	ACNGT	3 cut(s)	416, 824, 880
TaiI	ACGT	2 cut(s)	368, 1659
TaqI	TCGA	9 cut(s)	447, 1148, 1248, 1253, 1289, 1310, 1376, 1683, 1742
TaqII	GACCGA	1 cut(s)	467
TatI	WGTACW	1 cut(s)	1745
TauI	GCSGC	1 cut(s)	1493
TfiI	GAWTC	3 cut(s)	9, 784, 1250
Tru1I	TTAA	3 cut(s)	1116, 1140, 1777
Tru9I	TTAA	3 cut(s)	1116, 1140, 1777
TscAI	CASTG	3 cut(s)	286, 421, 1657
TseFI	GTSAC	2 cut(s)	281, 1002
TseI	GCWGC	4 cut(s)	713, 1054, 1163, 1577
Tsp45I	GTSAC	2 cut(s)	281, 1002
TspDTI	ATGAA	9 cut(s)	16, 176, 192, 311, 401, 510, 767, 776, 908
TspRI	CASTG	3 cut(s)	286, 421, 1657
Tth111I	GACNNNGTC	1 cut(s)	454
XapI	RAATTY	7 cut(s)	152, 273, 760, 1013, 1067, 1144, 1150
XbaI	TCTAGA	1 cut(s)	1030
XceI	RCATGY	1 cut(s)	1534
XhoI	CTCGAG	1 cut(s)	446
XmiI	GTMKAC	2 cut(s)	884, 1310
XmnI	GAANNNNTTC	2 cut(s)	167, 783
XspI	CTAG	5 cut(s)	90, 254, 806, 1031, 1749
ZrmI	AGTACT	1 cut(s)	1747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.