Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002277.1

Orthogroup ID

OG0001722

Physical Location & Seq

Genomic Coordinates Reverse (-)

158593 .. 158973

Gene Structure 381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002277.1_g000037.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

atgagaaatggcgaaaactatgacatttcaggtaaactttgcatcatatatgttatatctaaaaggatggctttcaaaccatgcagggactatgaagtattgaaccatcaactattgcatacattgattgaaaaggttaatggcattcagagataccagaagttctcttgggatgaagatagtgatttgaactggtcctcttggctggacagcaacttaccagaagatgaagactgttctgaagaccctgactacttagttcccgaacaagttggggacaatttaatcacagcttcaagtatcaagtgcattgtattgctaccctcagtttcatcgatgcttgtgataaatgacaccatatttctactctcagcttcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0007275 GO:0008150 GO:0009553 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0016020 GO:0016021 GO:0022414 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0042802 GO:0044425 GO:0044459 GO:0044464 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

126

Amino Acids

14.42

Weight (kDa)

4.4

Isoelectric Point (pI)

30.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490 AT5G55490
fragaria_vesca	FvH4_6g33230 FvH4_6g41730
malus_domestica	MD09G1119800.v1.1 MD09G1266100.v1.1 MD17G1110600.v1.1
prunus_persica	Prupe.3G163900_v2.0.a1 Prupe.3G204300_v2.0.a1 Prupe.3G204300_v2.0.a1
pyrus_communis	pycom07g05510
rosa_chinensis	RchiOBHm_Chr2g0139401 RchiOBHm_Chr2g0142951 RchiOBHm_Chr2g0157531
rosa_laevigata	RLG00000020000 RLG00000020995
rosa_multiflora	Rmu_co8048568.1_g000001 Rmu_sc0000083.1_g000018 Rmu_sc0002277.1_g000037 Rmu_sc0036081.1_g000001 Rmu_sc0036082.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092150 Rroxscaffold_2G00102200 Rroxscaffold_2G00147380
rosa_rugosa	Rorug02G0377400 Rorug02G0461800
rosa_samantha	Rh1CG268300 Rh2AG430400 Rh2AG525900 Rh2BG439400 Rh2BG540600 Rh2CG416100 Rh2CG510600 Rh2DG449400 Rh2DG549100 Rh4BG060600 Rh4CG066400 Rh5DG444200 Rh7DG175700
rosa_wichuraiana	Rw2G035150 Rw2G043560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	261
AgsI	TTSAA	5 cut(s)	76, 103, 131, 190, 297
AluBI	AGCT	2 cut(s)	293, 374
AluI	AGCT	2 cut(s)	293, 374
AspS9I	GGNCC	1 cut(s)	195
AvaII	GGWCC	1 cut(s)	195
BbsI	GAAGAC	2 cut(s)	237, 249
BccI	CCATC	2 cut(s)	61, 114
Bme18I	GGWCC	1 cut(s)	195
BmgT120I	GGNCC	1 cut(s)	195
BmsI	GCATC	2 cut(s)	51, 327
BpiI	GAAGAC	2 cut(s)	237, 249
Bsa29I	ATCGAT	1 cut(s)	335
Bse1I	ACTGG	1 cut(s)	197
BseCI	ATCGAT	1 cut(s)	335
BseGI	GGATG	2 cut(s)	72, 178
BseMII	CTCAG	1 cut(s)	339
BseNI	ACTGG	1 cut(s)	197
BshVI	ATCGAT	1 cut(s)	335
BslFI	GGGAC	2 cut(s)	101, 290
BsmFI	GGGAC	2 cut(s)	101, 290
BsmI	GAATGC	1 cut(s)	144
BspCNI	CTCAG	1 cut(s)	338
BspDI	ATCGAT	1 cut(s)	335
BsrI	ACTGG	1 cut(s)	197
Bst4CI	ACNGT	1 cut(s)	236
BstDEI	CTNAG	4 cut(s)	256, 325, 370, 378
BstF5I	GGATG	2 cut(s)	72, 178
BstV2I	GAAGAC	2 cut(s)	237, 249
Bsu15I	ATCGAT	1 cut(s)	335
BsuTUI	ATCGAT	1 cut(s)	335
BtsCI	GGATG	2 cut(s)	72, 178
Cfr13I	GGNCC	1 cut(s)	195
ClaI	ATCGAT	1 cut(s)	335
CviAII	CATG	1 cut(s)	81
CviJI	RGCY	4 cut(s)	71, 205, 293, 374
CviKI_1	RGCY	4 cut(s)	71, 205, 293, 374
DdeI	CTNAG	4 cut(s)	256, 325, 370, 378
Eco47I	GGWCC	1 cut(s)	195
Eco57I	CTGAAG	1 cut(s)	261
FaeI	CATG	1 cut(s)	84
FaiI	YATR	9 cut(s)	21, 47, 49, 51, 56, 82, 93, 120, 359
FalI	AAGNNNNNCTT	2 cut(s)	55, 87
FaqI	GGGAC	2 cut(s)	101, 290
FatI	CATG	1 cut(s)	80
FokI	GGATG	2 cut(s)	79, 185
Hin1II	CATG	1 cut(s)	84
Hpy166II	GTNNAC	1 cut(s)	35
Hpy188I	TCNGA	2 cut(s)	150, 241
Hpy188III	TCNNGA	1 cut(s)	263
Hpy8I	GTNNAC	1 cut(s)	35
HpyCH4III	ACNGT	1 cut(s)	236
HpyCH4V	TGCA	4 cut(s)	42, 84, 118, 309
HpyF3I	CTNAG	4 cut(s)	256, 325, 370, 378
Hsp92II	CATG	1 cut(s)	84
LpnPI	CCDG	7 cut(s)	15, 70, 170, 178, 191, 234, 261
LweI	GCATC	2 cut(s)	51, 327
MboII	GAAGA	4 cut(s)	188, 236, 242, 254
MluCI	AATT	1 cut(s)	280
MnlI	CCTC	2 cut(s)	208, 334
MseI	TTAA	2 cut(s)	138, 284
Mva1269I	GAATGC	1 cut(s)	144
NlaIII	CATG	1 cut(s)	84
PctI	GAATGC	1 cut(s)	144
PspPI	GGNCC	1 cut(s)	195
SaqAI	TTAA	2 cut(s)	138, 284
Sau96I	GGNCC	1 cut(s)	195
SetI	ASST	4 cut(s)	34, 138, 295, 376
SfaNI	GCATC	2 cut(s)	51, 327
SinI	GGWCC	1 cut(s)	195
Sse9I	AATT	1 cut(s)	280
TaaI	ACNGT	1 cut(s)	236
TaqI	TCGA	1 cut(s)	335
TasI	AATT	1 cut(s)	280
Tru1I	TTAA	2 cut(s)	138, 284
Tru9I	TTAA	2 cut(s)	138, 284
TspDTI	ATGAA	4 cut(s)	108, 189, 243, 321
VpaK11BI	GGWCC	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.